Strain Fitness in Escherichia coli BL21 around ECD_03685

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03682 and ECD_03683 overlap by 210 nucleotidesECD_03683 and ECD_03684 are separated by 451 nucleotidesECD_03684 and ECD_03685 are separated by 36 nucleotidesECD_03685 and ECD_03686 overlap by 4 nucleotidesECD_03686 and ECD_03687 overlap by 4 nucleotides ECD_03682: ECD_03682 - iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein, at 3,884,009 to 3,884,329 _03682 ECD_03683: ECD_03683 - hypothetical protein, at 3,884,120 to 3,884,347 _03683 ECD_03684: ECD_03684 - putative lipoprotein, at 3,884,799 to 3,885,002 _03684 ECD_03685: ECD_03685 - diaminopimelate epimerase, at 3,885,039 to 3,885,863 _03685 ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567 _03686 ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460 _03687 Position (kb) 3885 3886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3884.084 kb on - strand, within ECD_03682at 3884.180 kb on - strandat 3884.207 kb on - strandat 3884.335 kb on + strandat 3884.335 kb on + strandat 3884.362 kb on + strandat 3884.363 kb on - strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.445 kb on + strandat 3884.445 kb on + strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.451 kb on + strandat 3884.451 kb on + strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.453 kb on + strandat 3884.454 kb on - strandat 3884.455 kb on + strandat 3884.456 kb on - strandat 3884.456 kb on - strandat 3884.490 kb on - strandat 3884.520 kb on + strandat 3884.521 kb on - strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.610 kb on + strandat 3884.611 kb on - strandat 3884.647 kb on - strandat 3884.659 kb on + strandat 3884.659 kb on + strandat 3884.660 kb on - strandat 3884.674 kb on - strandat 3884.682 kb on + strandat 3884.683 kb on - strandat 3884.760 kb on + strandat 3884.760 kb on + strandat 3884.761 kb on - strandat 3884.813 kb on + strandat 3884.813 kb on + strandat 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.830 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.894 kb on + strand, within ECD_03684at 3884.895 kb on - strand, within ECD_03684at 3885.000 kb on + strandat 3885.000 kb on + strandat 3885.034 kb on - strandat 3885.312 kb on - strand, within ECD_03685at 3885.453 kb on + strand, within ECD_03685at 3885.453 kb on + strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.459 kb on - strand, within ECD_03685at 3885.459 kb on - strand, within ECD_03685at 3885.485 kb on - strand, within ECD_03685at 3885.485 kb on - strand, within ECD_03685at 3885.617 kb on + strand, within ECD_03685at 3885.618 kb on - strand, within ECD_03685at 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.814 kb on - strandat 3885.814 kb on - strandat 3885.815 kb on + strandat 3885.815 kb on + strandat 3885.841 kb on - strandat 3885.841 kb on - strandat 3885.859 kb on + strandat 3885.859 kb on + strandat 3885.860 kb on - strandat 3885.981 kb on + strand, within ECD_03686at 3886.045 kb on + strand, within ECD_03686at 3886.046 kb on - strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.051 kb on + strand, within ECD_03686at 3886.052 kb on - strand, within ECD_03686at 3886.125 kb on + strand, within ECD_03686at 3886.130 kb on + strand, within ECD_03686at 3886.131 kb on - strand, within ECD_03686at 3886.172 kb on - strand, within ECD_03686at 3886.255 kb on - strand, within ECD_03686at 3886.287 kb on + strand, within ECD_03686at 3886.288 kb on - strand, within ECD_03686at 3886.288 kb on - strand, within ECD_03686at 3886.315 kb on + strand, within ECD_03686at 3886.344 kb on - strand, within ECD_03686at 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.507 kb on - strandat 3886.564 kb on - strandat 3886.574 kb on + strandat 3886.574 kb on + strandat 3886.595 kb on - strandat 3886.595 kb on - strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.626 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.645 kb on - strandat 3886.645 kb on - strandat 3886.649 kb on - strandat 3886.745 kb on + strand, within ECD_03687at 3886.807 kb on - strand, within ECD_03687

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,884,084 - ECD_03682 0.23 -0.6
3,884,180 - -0.6
3,884,207 - -0.6
3,884,335 + -1.0
3,884,335 + +0.2
3,884,362 + -0.0
3,884,363 - +0.6
3,884,442 + +0.4
3,884,442 + -0.7
3,884,442 + +0.5
3,884,443 - -0.6
3,884,443 - +0.6
3,884,443 - -2.1
3,884,445 + +1.2
3,884,445 + +0.1
3,884,446 - +0.1
3,884,446 - +0.1
3,884,446 - +0.7
3,884,451 + +1.0
3,884,451 + -0.1
3,884,452 - +0.2
3,884,452 - +1.1
3,884,452 - +0.3
3,884,452 - -0.4
3,884,452 - -0.1
3,884,452 - -0.2
3,884,453 + -1.5
3,884,454 - +0.0
3,884,455 + +0.1
3,884,456 - -0.3
3,884,456 - -0.0
3,884,490 - -0.8
3,884,520 + -0.4
3,884,521 - -0.5
3,884,523 + -0.2
3,884,523 + -0.4
3,884,523 + +0.1
3,884,610 + -0.5
3,884,611 - -1.0
3,884,647 - +0.5
3,884,659 + +0.5
3,884,659 + +0.9
3,884,660 - +0.6
3,884,674 - +0.4
3,884,682 + +0.2
3,884,683 - +0.1
3,884,760 + +1.3
3,884,760 + +0.2
3,884,761 - +1.2
3,884,813 + -0.4
3,884,813 + +0.3
3,884,827 + ECD_03684 0.14 -0.4
3,884,827 + ECD_03684 0.14 +0.9
3,884,827 + ECD_03684 0.14 +0.1
3,884,830 + ECD_03684 0.15 -0.0
3,884,834 + ECD_03684 0.17 +0.2
3,884,834 + ECD_03684 0.17 +1.0
3,884,834 + ECD_03684 0.17 -0.2
3,884,894 + ECD_03684 0.47 -0.6
3,884,895 - ECD_03684 0.47 -0.3
3,885,000 + +0.3
3,885,000 + +1.1
3,885,034 - +1.3
3,885,312 - ECD_03685 0.33 +2.9
3,885,453 + ECD_03685 0.50 +1.9
3,885,453 + ECD_03685 0.50 -0.1
3,885,456 - ECD_03685 0.51 +0.1
3,885,456 - ECD_03685 0.51 +1.3
3,885,456 - ECD_03685 0.51 +1.3
3,885,459 - ECD_03685 0.51 +1.9
3,885,459 - ECD_03685 0.51 +2.9
3,885,485 - ECD_03685 0.54 +1.3
3,885,485 - ECD_03685 0.54 +0.5
3,885,617 + ECD_03685 0.70 +0.9
3,885,618 - ECD_03685 0.70 +2.9
3,885,813 + -0.1
3,885,813 + +0.1
3,885,813 + +1.3
3,885,813 + -0.6
3,885,813 + +1.9
3,885,814 - +1.3
3,885,814 - +0.9
3,885,815 + +1.3
3,885,815 + +0.9
3,885,841 - -2.2
3,885,841 - -2.9
3,885,859 + +1.1
3,885,859 + +0.0
3,885,860 - +0.2
3,885,981 + ECD_03686 0.17 -1.0
3,886,045 + ECD_03686 0.26 +0.0
3,886,046 - ECD_03686 0.26 +0.5
3,886,051 + ECD_03686 0.27 +0.1
3,886,051 + ECD_03686 0.27 +1.1
3,886,051 + ECD_03686 0.27 -0.6
3,886,051 + ECD_03686 0.27 -0.6
3,886,052 - ECD_03686 0.27 -0.3
3,886,125 + ECD_03686 0.37 +0.1
3,886,130 + ECD_03686 0.38 -0.1
3,886,131 - ECD_03686 0.38 -0.7
3,886,172 - ECD_03686 0.44 -0.1
3,886,255 - ECD_03686 0.56 -0.9
3,886,287 + ECD_03686 0.60 -0.3
3,886,288 - ECD_03686 0.60 -0.3
3,886,288 - ECD_03686 0.60 -0.0
3,886,315 + ECD_03686 0.64 +0.4
3,886,344 - ECD_03686 0.68 +0.5
3,886,506 + +0.0
3,886,506 + -0.2
3,886,506 + -0.1
3,886,507 - -1.1
3,886,564 - -0.1
3,886,574 + -0.5
3,886,574 + +1.5
3,886,595 - +1.6
3,886,595 - -0.1
3,886,598 + +0.3
3,886,598 + -0.7
3,886,598 + +1.4
3,886,598 + -0.5
3,886,598 + -0.6
3,886,598 + -0.2
3,886,598 + +0.6
3,886,599 - -0.6
3,886,599 - +0.3
3,886,599 - -0.8
3,886,599 - +0.2
3,886,599 - +1.3
3,886,626 + -0.7
3,886,644 + -0.4
3,886,644 + +1.9
3,886,644 + -1.6
3,886,645 - -0.3
3,886,645 - -0.0
3,886,649 - +1.9
3,886,745 + ECD_03687 0.20 -0.8
3,886,807 - ECD_03687 0.27 +0.3

Or see this region's nucleotide sequence