Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03682 and ECD_03683 overlap by 210 nucleotides ECD_03683 and ECD_03684 are separated by 451 nucleotides ECD_03684 and ECD_03685 are separated by 36 nucleotides ECD_03685 and ECD_03686 overlap by 4 nucleotides ECD_03686 and ECD_03687 overlap by 4 nucleotides
ECD_03682: ECD_03682 - iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein, at 3,884,009 to 3,884,329
_03682
ECD_03683: ECD_03683 - hypothetical protein, at 3,884,120 to 3,884,347
_03683
ECD_03684: ECD_03684 - putative lipoprotein, at 3,884,799 to 3,885,002
_03684
ECD_03685: ECD_03685 - diaminopimelate epimerase, at 3,885,039 to 3,885,863
_03685
ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567
_03686
ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460
_03687
Position (kb)
3885
3886 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3884.084 kb on - strand, within ECD_03682 at 3884.180 kb on - strand at 3884.207 kb on - strand at 3884.335 kb on + strand at 3884.335 kb on + strand at 3884.362 kb on + strand at 3884.363 kb on - strand at 3884.442 kb on + strand at 3884.442 kb on + strand at 3884.442 kb on + strand at 3884.443 kb on - strand at 3884.443 kb on - strand at 3884.443 kb on - strand at 3884.445 kb on + strand at 3884.445 kb on + strand at 3884.446 kb on - strand at 3884.446 kb on - strand at 3884.446 kb on - strand at 3884.451 kb on + strand at 3884.451 kb on + strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.452 kb on - strand at 3884.453 kb on + strand at 3884.454 kb on - strand at 3884.455 kb on + strand at 3884.456 kb on - strand at 3884.456 kb on - strand at 3884.490 kb on - strand at 3884.520 kb on + strand at 3884.521 kb on - strand at 3884.523 kb on + strand at 3884.523 kb on + strand at 3884.523 kb on + strand at 3884.610 kb on + strand at 3884.611 kb on - strand at 3884.647 kb on - strand at 3884.659 kb on + strand at 3884.659 kb on + strand at 3884.660 kb on - strand at 3884.674 kb on - strand at 3884.682 kb on + strand at 3884.683 kb on - strand at 3884.760 kb on + strand at 3884.760 kb on + strand at 3884.761 kb on - strand at 3884.813 kb on + strand at 3884.813 kb on + strand at 3884.827 kb on + strand, within ECD_03684 at 3884.827 kb on + strand, within ECD_03684 at 3884.827 kb on + strand, within ECD_03684 at 3884.830 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.834 kb on + strand, within ECD_03684 at 3884.894 kb on + strand, within ECD_03684 at 3884.895 kb on - strand, within ECD_03684 at 3885.000 kb on + strand at 3885.000 kb on + strand at 3885.034 kb on - strand at 3885.312 kb on - strand, within ECD_03685 at 3885.453 kb on + strand, within ECD_03685 at 3885.453 kb on + strand, within ECD_03685 at 3885.456 kb on - strand, within ECD_03685 at 3885.456 kb on - strand, within ECD_03685 at 3885.456 kb on - strand, within ECD_03685 at 3885.459 kb on - strand, within ECD_03685 at 3885.459 kb on - strand, within ECD_03685 at 3885.485 kb on - strand, within ECD_03685 at 3885.485 kb on - strand, within ECD_03685 at 3885.617 kb on + strand, within ECD_03685 at 3885.618 kb on - strand, within ECD_03685 at 3885.813 kb on + strand at 3885.813 kb on + strand at 3885.813 kb on + strand at 3885.813 kb on + strand at 3885.813 kb on + strand at 3885.814 kb on - strand at 3885.814 kb on - strand at 3885.815 kb on + strand at 3885.815 kb on + strand at 3885.841 kb on - strand at 3885.841 kb on - strand at 3885.859 kb on + strand at 3885.859 kb on + strand at 3885.860 kb on - strand at 3885.981 kb on + strand, within ECD_03686 at 3886.045 kb on + strand, within ECD_03686 at 3886.046 kb on - strand, within ECD_03686 at 3886.051 kb on + strand, within ECD_03686 at 3886.051 kb on + strand, within ECD_03686 at 3886.051 kb on + strand, within ECD_03686 at 3886.051 kb on + strand, within ECD_03686 at 3886.052 kb on - strand, within ECD_03686 at 3886.125 kb on + strand, within ECD_03686 at 3886.130 kb on + strand, within ECD_03686 at 3886.131 kb on - strand, within ECD_03686 at 3886.172 kb on - strand, within ECD_03686 at 3886.255 kb on - strand, within ECD_03686 at 3886.287 kb on + strand, within ECD_03686 at 3886.288 kb on - strand, within ECD_03686 at 3886.288 kb on - strand, within ECD_03686 at 3886.315 kb on + strand, within ECD_03686 at 3886.344 kb on - strand, within ECD_03686 at 3886.506 kb on + strand at 3886.506 kb on + strand at 3886.506 kb on + strand at 3886.507 kb on - strand at 3886.564 kb on - strand at 3886.574 kb on + strand at 3886.574 kb on + strand at 3886.595 kb on - strand at 3886.595 kb on - strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.626 kb on + strand at 3886.644 kb on + strand at 3886.644 kb on + strand at 3886.644 kb on + strand at 3886.645 kb on - strand at 3886.645 kb on - strand at 3886.649 kb on - strand at 3886.745 kb on + strand, within ECD_03687 at 3886.807 kb on - strand, within ECD_03687
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,884,084 - ECD_03682 0.23 -0.6 3,884,180 - -0.6 3,884,207 - -0.6 3,884,335 + -1.0 3,884,335 + +0.2 3,884,362 + -0.0 3,884,363 - +0.6 3,884,442 + +0.4 3,884,442 + -0.7 3,884,442 + +0.5 3,884,443 - -0.6 3,884,443 - +0.6 3,884,443 - -2.1 3,884,445 + +1.2 3,884,445 + +0.1 3,884,446 - +0.1 3,884,446 - +0.1 3,884,446 - +0.7 3,884,451 + +1.0 3,884,451 + -0.1 3,884,452 - +0.2 3,884,452 - +1.1 3,884,452 - +0.3 3,884,452 - -0.4 3,884,452 - -0.1 3,884,452 - -0.2 3,884,453 + -1.5 3,884,454 - +0.0 3,884,455 + +0.1 3,884,456 - -0.3 3,884,456 - -0.0 3,884,490 - -0.8 3,884,520 + -0.4 3,884,521 - -0.5 3,884,523 + -0.2 3,884,523 + -0.4 3,884,523 + +0.1 3,884,610 + -0.5 3,884,611 - -1.0 3,884,647 - +0.5 3,884,659 + +0.5 3,884,659 + +0.9 3,884,660 - +0.6 3,884,674 - +0.4 3,884,682 + +0.2 3,884,683 - +0.1 3,884,760 + +1.3 3,884,760 + +0.2 3,884,761 - +1.2 3,884,813 + -0.4 3,884,813 + +0.3 3,884,827 + ECD_03684 0.14 -0.4 3,884,827 + ECD_03684 0.14 +0.9 3,884,827 + ECD_03684 0.14 +0.1 3,884,830 + ECD_03684 0.15 -0.0 3,884,834 + ECD_03684 0.17 +0.2 3,884,834 + ECD_03684 0.17 +1.0 3,884,834 + ECD_03684 0.17 -0.2 3,884,894 + ECD_03684 0.47 -0.6 3,884,895 - ECD_03684 0.47 -0.3 3,885,000 + +0.3 3,885,000 + +1.1 3,885,034 - +1.3 3,885,312 - ECD_03685 0.33 +2.9 3,885,453 + ECD_03685 0.50 +1.9 3,885,453 + ECD_03685 0.50 -0.1 3,885,456 - ECD_03685 0.51 +0.1 3,885,456 - ECD_03685 0.51 +1.3 3,885,456 - ECD_03685 0.51 +1.3 3,885,459 - ECD_03685 0.51 +1.9 3,885,459 - ECD_03685 0.51 +2.9 3,885,485 - ECD_03685 0.54 +1.3 3,885,485 - ECD_03685 0.54 +0.5 3,885,617 + ECD_03685 0.70 +0.9 3,885,618 - ECD_03685 0.70 +2.9 3,885,813 + -0.1 3,885,813 + +0.1 3,885,813 + +1.3 3,885,813 + -0.6 3,885,813 + +1.9 3,885,814 - +1.3 3,885,814 - +0.9 3,885,815 + +1.3 3,885,815 + +0.9 3,885,841 - -2.2 3,885,841 - -2.9 3,885,859 + +1.1 3,885,859 + +0.0 3,885,860 - +0.2 3,885,981 + ECD_03686 0.17 -1.0 3,886,045 + ECD_03686 0.26 +0.0 3,886,046 - ECD_03686 0.26 +0.5 3,886,051 + ECD_03686 0.27 +0.1 3,886,051 + ECD_03686 0.27 +1.1 3,886,051 + ECD_03686 0.27 -0.6 3,886,051 + ECD_03686 0.27 -0.6 3,886,052 - ECD_03686 0.27 -0.3 3,886,125 + ECD_03686 0.37 +0.1 3,886,130 + ECD_03686 0.38 -0.1 3,886,131 - ECD_03686 0.38 -0.7 3,886,172 - ECD_03686 0.44 -0.1 3,886,255 - ECD_03686 0.56 -0.9 3,886,287 + ECD_03686 0.60 -0.3 3,886,288 - ECD_03686 0.60 -0.3 3,886,288 - ECD_03686 0.60 -0.0 3,886,315 + ECD_03686 0.64 +0.4 3,886,344 - ECD_03686 0.68 +0.5 3,886,506 + +0.0 3,886,506 + -0.2 3,886,506 + -0.1 3,886,507 - -1.1 3,886,564 - -0.1 3,886,574 + -0.5 3,886,574 + +1.5 3,886,595 - +1.6 3,886,595 - -0.1 3,886,598 + +0.3 3,886,598 + -0.7 3,886,598 + +1.4 3,886,598 + -0.5 3,886,598 + -0.6 3,886,598 + -0.2 3,886,598 + +0.6 3,886,599 - -0.6 3,886,599 - +0.3 3,886,599 - -0.8 3,886,599 - +0.2 3,886,599 - +1.3 3,886,626 + -0.7 3,886,644 + -0.4 3,886,644 + +1.9 3,886,644 + -1.6 3,886,645 - -0.3 3,886,645 - -0.0 3,886,649 - +1.9 3,886,745 + ECD_03687 0.20 -0.8 3,886,807 - ECD_03687 0.27 +0.3
Or see this region's nucleotide sequence