Strain Fitness in Escherichia coli BL21 around ECD_03659

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03658 and ECD_03659 are separated by 130 nucleotidesECD_03659 and ECD_03660 are separated by 140 nucleotidesECD_03660 and ECD_03661 are separated by 84 nucleotides ECD_03658: ECD_03658 - ATP-dependent RNA helicase, at 3,854,605 to 3,855,870 _03658 ECD_03659: ECD_03659 - thioredoxin 1, at 3,856,001 to 3,856,330 _03659 ECD_03660: ECD_03660 - rho operon leader peptide, at 3,856,471 to 3,856,572 _03660 ECD_03661: ECD_03661 - transcription termination factor, at 3,856,657 to 3,857,916 _03661 Position (kb) 3856 3857Strain fitness (log2 ratio) -1 0 1at 3855.078 kb on + strand, within ECD_03658at 3855.079 kb on - strand, within ECD_03658at 3855.154 kb on - strand, within ECD_03658at 3855.154 kb on - strand, within ECD_03658at 3855.178 kb on - strand, within ECD_03658at 3855.181 kb on - strand, within ECD_03658at 3855.182 kb on - strand, within ECD_03658at 3855.216 kb on + strand, within ECD_03658at 3855.216 kb on + strand, within ECD_03658at 3855.217 kb on - strand, within ECD_03658at 3855.218 kb on + strand, within ECD_03658at 3855.219 kb on - strand, within ECD_03658at 3855.219 kb on - strand, within ECD_03658at 3855.342 kb on + strand, within ECD_03658at 3855.342 kb on + strand, within ECD_03658at 3855.343 kb on - strand, within ECD_03658at 3855.343 kb on - strand, within ECD_03658at 3855.359 kb on + strand, within ECD_03658at 3855.359 kb on + strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.360 kb on - strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.411 kb on + strand, within ECD_03658at 3855.412 kb on - strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.428 kb on + strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.429 kb on - strand, within ECD_03658at 3855.436 kb on + strand, within ECD_03658at 3855.437 kb on - strand, within ECD_03658at 3855.516 kb on - strand, within ECD_03658at 3855.516 kb on - strand, within ECD_03658at 3855.516 kb on - strand, within ECD_03658at 3855.540 kb on + strand, within ECD_03658at 3855.603 kb on + strand, within ECD_03658at 3855.604 kb on - strand, within ECD_03658at 3855.607 kb on + strand, within ECD_03658at 3855.607 kb on + strand, within ECD_03658at 3855.608 kb on - strand, within ECD_03658at 3855.662 kb on + strand, within ECD_03658at 3855.662 kb on + strand, within ECD_03658at 3855.663 kb on - strand, within ECD_03658at 3855.678 kb on + strand, within ECD_03658at 3855.679 kb on - strand, within ECD_03658at 3855.775 kb on - strandat 3855.809 kb on - strandat 3855.809 kb on - strandat 3855.854 kb on - strandat 3855.870 kb on + strandat 3855.870 kb on + strandat 3855.870 kb on + strandat 3855.870 kb on + strandat 3855.870 kb on + strandat 3855.871 kb on - strandat 3855.871 kb on - strandat 3855.878 kb on + strandat 3855.892 kb on - strandat 3855.895 kb on - strandat 3855.895 kb on - strandat 3855.938 kb on - strandat 3855.951 kb on + strandat 3855.951 kb on + strandat 3855.952 kb on - strandat 3855.982 kb on + strandat 3855.983 kb on - strandat 3855.998 kb on + strandat 3855.998 kb on + strandat 3855.998 kb on + strandat 3855.998 kb on + strandat 3855.999 kb on - strandat 3855.999 kb on - strandat 3855.999 kb on - strandat 3855.999 kb on - strandat 3855.999 kb on - strandat 3856.000 kb on + strandat 3856.000 kb on + strandat 3856.212 kb on - strand, within ECD_03659at 3856.288 kb on + strand, within ECD_03659at 3856.328 kb on + strandat 3856.391 kb on - strandat 3856.395 kb on + strandat 3856.395 kb on + strandat 3856.396 kb on - strandat 3856.412 kb on + strandat 3856.412 kb on + strandat 3856.418 kb on + strandat 3856.423 kb on + strandat 3856.423 kb on + strandat 3856.423 kb on + strandat 3856.423 kb on + strandat 3856.423 kb on + strandat 3856.426 kb on + strandat 3856.426 kb on + strandat 3856.426 kb on + strandat 3856.468 kb on + strandat 3856.531 kb on + strand, within ECD_03660at 3856.531 kb on + strand, within ECD_03660at 3856.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,855,078 + ECD_03658 0.37 +0.1
3,855,079 - ECD_03658 0.37 +1.1
3,855,154 - ECD_03658 0.43 +0.1
3,855,154 - ECD_03658 0.43 +0.3
3,855,178 - ECD_03658 0.45 -0.7
3,855,181 - ECD_03658 0.45 -0.3
3,855,182 - ECD_03658 0.46 -1.2
3,855,216 + ECD_03658 0.48 -0.8
3,855,216 + ECD_03658 0.48 -0.4
3,855,217 - ECD_03658 0.48 +0.3
3,855,218 + ECD_03658 0.48 -0.7
3,855,219 - ECD_03658 0.48 -0.8
3,855,219 - ECD_03658 0.48 +0.5
3,855,342 + ECD_03658 0.58 -0.7
3,855,342 + ECD_03658 0.58 -1.3
3,855,343 - ECD_03658 0.58 -0.7
3,855,343 - ECD_03658 0.58 +0.1
3,855,359 + ECD_03658 0.60 -0.1
3,855,359 + ECD_03658 0.60 -0.6
3,855,360 - ECD_03658 0.60 -0.4
3,855,360 - ECD_03658 0.60 -0.5
3,855,360 - ECD_03658 0.60 +1.0
3,855,360 - ECD_03658 0.60 +0.4
3,855,360 - ECD_03658 0.60 -0.8
3,855,411 + ECD_03658 0.64 -1.0
3,855,411 + ECD_03658 0.64 -0.2
3,855,411 + ECD_03658 0.64 -0.5
3,855,411 + ECD_03658 0.64 -1.0
3,855,411 + ECD_03658 0.64 -1.7
3,855,412 - ECD_03658 0.64 -0.8
3,855,428 + ECD_03658 0.65 +0.1
3,855,428 + ECD_03658 0.65 -1.0
3,855,428 + ECD_03658 0.65 -0.3
3,855,429 - ECD_03658 0.65 +0.5
3,855,429 - ECD_03658 0.65 -0.5
3,855,429 - ECD_03658 0.65 -0.2
3,855,436 + ECD_03658 0.66 +0.1
3,855,437 - ECD_03658 0.66 +0.2
3,855,516 - ECD_03658 0.72 +0.0
3,855,516 - ECD_03658 0.72 -1.4
3,855,516 - ECD_03658 0.72 -0.1
3,855,540 + ECD_03658 0.74 -0.6
3,855,603 + ECD_03658 0.79 -0.2
3,855,604 - ECD_03658 0.79 -1.5
3,855,607 + ECD_03658 0.79 +1.3
3,855,607 + ECD_03658 0.79 -0.5
3,855,608 - ECD_03658 0.79 +0.0
3,855,662 + ECD_03658 0.83 +0.3
3,855,662 + ECD_03658 0.83 +0.4
3,855,663 - ECD_03658 0.84 +0.9
3,855,678 + ECD_03658 0.85 +0.1
3,855,679 - ECD_03658 0.85 +0.3
3,855,775 - -0.4
3,855,809 - -0.6
3,855,809 - -0.7
3,855,854 - -0.6
3,855,870 + -0.1
3,855,870 + -0.5
3,855,870 + -0.4
3,855,870 + +0.2
3,855,870 + -0.2
3,855,871 - -0.4
3,855,871 - -1.5
3,855,878 + -0.3
3,855,892 - +0.0
3,855,895 - +0.6
3,855,895 - -0.7
3,855,938 - -0.6
3,855,951 + -0.0
3,855,951 + +0.1
3,855,952 - +0.3
3,855,982 + -0.6
3,855,983 - +0.7
3,855,998 + -0.5
3,855,998 + +0.7
3,855,998 + -1.2
3,855,998 + +0.0
3,855,999 - -1.1
3,855,999 - -1.4
3,855,999 - +0.7
3,855,999 - +1.1
3,855,999 - +0.3
3,856,000 + -0.1
3,856,000 + -0.2
3,856,212 - ECD_03659 0.64 -1.7
3,856,288 + ECD_03659 0.87 -0.3
3,856,328 + -0.1
3,856,391 - -0.7
3,856,395 + -0.5
3,856,395 + -0.6
3,856,396 - -0.9
3,856,412 + -0.6
3,856,412 + +0.4
3,856,418 + -0.7
3,856,423 + +0.6
3,856,423 + -0.9
3,856,423 + -0.2
3,856,423 + -1.4
3,856,423 + -0.5
3,856,426 + -0.8
3,856,426 + +0.1
3,856,426 + -0.4
3,856,468 + -0.3
3,856,531 + ECD_03660 0.59 +0.5
3,856,531 + ECD_03660 0.59 -0.4
3,856,640 + -0.5

Or see this region's nucleotide sequence