Strain Fitness in Escherichia coli BL21 around ECD_03653

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03652 and ECD_03653 are separated by 86 nucleotidesECD_03653 and ECD_03654 are separated by 198 nucleotidesECD_03654 and ECD_03656 are separated by 389 nucleotides ECD_03652: ECD_03652 - ketol-acid reductoisomerase, NAD(P)-binding, at 3,848,212 to 3,849,687 _03652 ECD_03653: ECD_03653 - peptidyl-prolyl cis-trans isomerase C (rotamase C), at 3,849,774 to 3,850,055 _03653 ECD_03654: ECD_03654 - hypothetical protein, at 3,850,254 to 3,850,529 _03654 ECD_03656: ECD_03656 - DNA helicase and single-stranded DNA-dependent ATPase, at 3,850,919 to 3,852,940 _03656 Position (kb) 3849 3850 3851Strain fitness (log2 ratio) -2 -1 0 1at 3848.956 kb on + strand, within ECD_03652at 3848.956 kb on + strand, within ECD_03652at 3849.067 kb on + strand, within ECD_03652at 3849.120 kb on + strand, within ECD_03652at 3849.120 kb on + strand, within ECD_03652at 3849.120 kb on + strand, within ECD_03652at 3849.183 kb on + strand, within ECD_03652at 3849.244 kb on + strand, within ECD_03652at 3849.271 kb on + strand, within ECD_03652at 3849.271 kb on + strand, within ECD_03652at 3849.271 kb on + strand, within ECD_03652at 3849.279 kb on + strand, within ECD_03652at 3849.287 kb on + strand, within ECD_03652at 3849.370 kb on + strand, within ECD_03652at 3849.370 kb on + strand, within ECD_03652at 3849.370 kb on + strand, within ECD_03652at 3849.370 kb on + strand, within ECD_03652at 3849.373 kb on + strand, within ECD_03652at 3849.466 kb on + strand, within ECD_03652at 3849.471 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.475 kb on + strand, within ECD_03652at 3849.476 kb on - strand, within ECD_03652at 3849.487 kb on + strand, within ECD_03652at 3849.487 kb on + strand, within ECD_03652at 3849.629 kb on + strandat 3849.629 kb on + strandat 3849.629 kb on + strandat 3849.629 kb on + strandat 3849.634 kb on - strandat 3849.649 kb on + strandat 3849.651 kb on + strandat 3849.651 kb on + strandat 3849.652 kb on - strandat 3849.652 kb on - strandat 3849.652 kb on - strandat 3849.652 kb on - strandat 3849.660 kb on + strandat 3849.669 kb on + strandat 3849.669 kb on + strandat 3849.670 kb on - strandat 3849.670 kb on - strandat 3849.670 kb on - strandat 3849.773 kb on - strandat 3849.773 kb on - strandat 3849.775 kb on + strandat 3849.775 kb on + strandat 3849.775 kb on + strandat 3849.775 kb on + strandat 3849.776 kb on - strandat 3849.785 kb on - strandat 3849.794 kb on + strandat 3849.794 kb on + strandat 3849.866 kb on + strand, within ECD_03653at 3849.906 kb on + strand, within ECD_03653at 3849.981 kb on - strand, within ECD_03653at 3850.020 kb on + strand, within ECD_03653at 3850.074 kb on + strandat 3850.118 kb on + strandat 3850.143 kb on + strandat 3850.144 kb on - strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.147 kb on + strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.148 kb on - strandat 3850.150 kb on - strandat 3850.214 kb on - strandat 3850.302 kb on + strand, within ECD_03654at 3850.302 kb on + strand, within ECD_03654at 3850.303 kb on - strand, within ECD_03654at 3850.303 kb on - strand, within ECD_03654at 3850.303 kb on - strand, within ECD_03654at 3850.303 kb on - strand, within ECD_03654at 3850.351 kb on + strand, within ECD_03654at 3850.352 kb on - strand, within ECD_03654at 3850.392 kb on + strand, within ECD_03654at 3850.485 kb on + strand, within ECD_03654at 3850.565 kb on + strandat 3850.565 kb on + strandat 3850.566 kb on - strandat 3850.566 kb on - strandat 3850.605 kb on + strandat 3850.606 kb on - strandat 3850.606 kb on - strandat 3850.608 kb on + strandat 3850.608 kb on + strandat 3850.608 kb on + strandat 3850.608 kb on + strandat 3850.608 kb on + strandat 3850.609 kb on - strandat 3850.609 kb on - strandat 3850.609 kb on - strandat 3850.609 kb on - strandat 3850.645 kb on - strandat 3850.648 kb on + strandat 3850.649 kb on - strandat 3850.649 kb on - strandat 3850.649 kb on - strandat 3850.721 kb on + strandat 3850.722 kb on - strandat 3850.773 kb on + strandat 3850.819 kb on + strandat 3850.819 kb on + strandat 3850.820 kb on - strandat 3850.918 kb on + strandat 3850.918 kb on + strandat 3850.918 kb on + strandat 3850.918 kb on + strandat 3850.918 kb on + strandat 3850.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,848,956 + ECD_03652 0.50 +0.1
3,848,956 + ECD_03652 0.50 -0.4
3,849,067 + ECD_03652 0.58 -0.6
3,849,120 + ECD_03652 0.62 +0.7
3,849,120 + ECD_03652 0.62 +0.1
3,849,120 + ECD_03652 0.62 -1.9
3,849,183 + ECD_03652 0.66 -0.0
3,849,244 + ECD_03652 0.70 -0.3
3,849,271 + ECD_03652 0.72 +0.1
3,849,271 + ECD_03652 0.72 -0.8
3,849,271 + ECD_03652 0.72 +0.6
3,849,279 + ECD_03652 0.72 +0.6
3,849,287 + ECD_03652 0.73 -1.2
3,849,370 + ECD_03652 0.78 -0.0
3,849,370 + ECD_03652 0.78 -0.0
3,849,370 + ECD_03652 0.78 -0.2
3,849,370 + ECD_03652 0.78 +0.1
3,849,373 + ECD_03652 0.79 -0.4
3,849,466 + ECD_03652 0.85 +0.3
3,849,471 + ECD_03652 0.85 -0.1
3,849,475 + ECD_03652 0.86 +0.4
3,849,475 + ECD_03652 0.86 +0.2
3,849,475 + ECD_03652 0.86 +0.1
3,849,475 + ECD_03652 0.86 -0.6
3,849,475 + ECD_03652 0.86 +0.7
3,849,475 + ECD_03652 0.86 +0.2
3,849,475 + ECD_03652 0.86 -0.0
3,849,475 + ECD_03652 0.86 -0.8
3,849,475 + ECD_03652 0.86 +0.0
3,849,475 + ECD_03652 0.86 -0.4
3,849,476 - ECD_03652 0.86 +1.0
3,849,487 + ECD_03652 0.86 -0.2
3,849,487 + ECD_03652 0.86 -0.7
3,849,629 + -0.3
3,849,629 + -1.0
3,849,629 + -0.6
3,849,629 + -0.4
3,849,634 - +1.3
3,849,649 + -0.8
3,849,651 + -0.0
3,849,651 + +0.6
3,849,652 - +0.5
3,849,652 - -0.0
3,849,652 - +1.0
3,849,652 - -0.1
3,849,660 + +0.2
3,849,669 + -1.2
3,849,669 + +0.1
3,849,670 - -0.2
3,849,670 - -0.3
3,849,670 - -0.2
3,849,773 - -0.6
3,849,773 - +0.1
3,849,775 + -0.2
3,849,775 + +1.1
3,849,775 + +0.4
3,849,775 + +0.8
3,849,776 - -0.4
3,849,785 - -0.1
3,849,794 + -1.0
3,849,794 + +0.8
3,849,866 + ECD_03653 0.33 -0.1
3,849,906 + ECD_03653 0.47 -0.5
3,849,981 - ECD_03653 0.73 -0.7
3,850,020 + ECD_03653 0.87 -0.3
3,850,074 + +0.3
3,850,118 + -2.1
3,850,143 + -0.8
3,850,144 - +0.2
3,850,147 + +0.2
3,850,147 + +0.2
3,850,147 + -0.0
3,850,147 + -0.3
3,850,147 + -1.6
3,850,147 + +0.2
3,850,147 + -0.9
3,850,147 + +0.7
3,850,147 + -0.5
3,850,147 + +0.5
3,850,147 + +0.5
3,850,147 + +0.2
3,850,147 + +0.4
3,850,147 + +0.4
3,850,147 + -0.5
3,850,148 - +0.4
3,850,148 - +0.0
3,850,148 - -0.2
3,850,148 - -0.3
3,850,148 - -1.0
3,850,148 - +0.7
3,850,148 - +1.3
3,850,148 - -0.6
3,850,148 - -0.4
3,850,148 - -0.4
3,850,148 - -1.7
3,850,148 - +0.0
3,850,148 - +0.6
3,850,148 - +0.3
3,850,148 - +0.6
3,850,148 - +1.1
3,850,148 - +0.7
3,850,148 - +0.3
3,850,148 - -0.9
3,850,148 - +1.6
3,850,148 - +0.2
3,850,148 - +0.8
3,850,148 - -0.3
3,850,150 - +0.6
3,850,214 - -0.2
3,850,302 + ECD_03654 0.17 -0.3
3,850,302 + ECD_03654 0.17 +0.4
3,850,303 - ECD_03654 0.18 -1.0
3,850,303 - ECD_03654 0.18 -0.1
3,850,303 - ECD_03654 0.18 +0.7
3,850,303 - ECD_03654 0.18 +0.9
3,850,351 + ECD_03654 0.35 +0.2
3,850,352 - ECD_03654 0.36 -0.4
3,850,392 + ECD_03654 0.50 -2.0
3,850,485 + ECD_03654 0.84 +0.1
3,850,565 + -0.7
3,850,565 + -0.2
3,850,566 - -0.6
3,850,566 - +0.3
3,850,605 + -1.2
3,850,606 - +0.6
3,850,606 - -0.0
3,850,608 + +0.1
3,850,608 + +0.4
3,850,608 + +0.3
3,850,608 + -0.4
3,850,608 + +0.2
3,850,609 - +0.5
3,850,609 - -0.1
3,850,609 - -0.4
3,850,609 - +0.6
3,850,645 - +1.1
3,850,648 + -0.4
3,850,649 - +1.3
3,850,649 - +1.5
3,850,649 - +0.7
3,850,721 + -0.0
3,850,722 - +0.4
3,850,773 + +0.1
3,850,819 + +0.6
3,850,819 + +0.6
3,850,820 - -0.8
3,850,918 + +1.5
3,850,918 + +0.0
3,850,918 + +0.3
3,850,918 + +0.4
3,850,918 + +0.0
3,850,918 + +0.3

Or see this region's nucleotide sequence