Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03624 and ECD_03625 are separated by 63 nucleotides ECD_03625 and ECD_03626 are separated by 378 nucleotides ECD_03626 and ECD_03627 are separated by 89 nucleotides
ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481
_03624
ECD_03625: ECD_03625 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34, at 3,812,545 to 3,814,434
_03625
ECD_03626: ECD_03626 - FMN-binding protein MioC, at 3,814,813 to 3,815,256
_03626
ECD_03627: ECD_03627 - transcriptional activator of asnA; autorepressor, at 3,815,346 to 3,815,804
_03627
Position (kb)
3812
3813
3814
3815 Strain fitness (log2 ratio)
-1
0
1
2 at 3811.568 kb on - strand at 3811.610 kb on - strand at 3811.712 kb on - strand at 3811.787 kb on + strand at 3811.875 kb on + strand at 3811.943 kb on + strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.044 kb on - strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.074 kb on + strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.075 kb on - strand, within ECD_03624 at 3812.110 kb on + strand, within ECD_03624 at 3812.111 kb on - strand, within ECD_03624 at 3812.184 kb on + strand, within ECD_03624 at 3812.230 kb on - strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.294 kb on + strand, within ECD_03624 at 3812.295 kb on - strand, within ECD_03624 at 3812.295 kb on - strand, within ECD_03624 at 3812.330 kb on - strand, within ECD_03624 at 3812.344 kb on - strand, within ECD_03624 at 3812.344 kb on - strand, within ECD_03624 at 3812.369 kb on + strand, within ECD_03624 at 3812.370 kb on - strand, within ECD_03624 at 3812.370 kb on - strand, within ECD_03624 at 3812.385 kb on + strand, within ECD_03624 at 3812.385 kb on + strand, within ECD_03624 at 3812.386 kb on - strand, within ECD_03624 at 3812.386 kb on - strand, within ECD_03624 at 3812.394 kb on + strand, within ECD_03624 at 3812.395 kb on - strand, within ECD_03624 at 3812.403 kb on - strand, within ECD_03624 at 3812.409 kb on + strand, within ECD_03624 at 3812.409 kb on + strand, within ECD_03624 at 3812.410 kb on - strand, within ECD_03624 at 3812.410 kb on - strand, within ECD_03624 at 3812.442 kb on + strand at 3812.442 kb on + strand at 3812.443 kb on - strand at 3812.461 kb on + strand at 3812.538 kb on + strand at 3812.539 kb on - strand at 3812.566 kb on - strand at 3812.625 kb on + strand at 3812.626 kb on - strand at 3812.784 kb on - strand, within ECD_03625 at 3812.877 kb on - strand, within ECD_03625 at 3813.019 kb on - strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.153 kb on + strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.154 kb on - strand, within ECD_03625 at 3813.200 kb on - strand, within ECD_03625 at 3813.210 kb on - strand, within ECD_03625 at 3813.352 kb on - strand, within ECD_03625 at 3813.454 kb on - strand, within ECD_03625 at 3813.454 kb on - strand, within ECD_03625 at 3813.502 kb on - strand, within ECD_03625 at 3813.641 kb on + strand, within ECD_03625 at 3813.641 kb on + strand, within ECD_03625 at 3813.641 kb on + strand, within ECD_03625 at 3813.642 kb on - strand, within ECD_03625 at 3813.642 kb on - strand, within ECD_03625 at 3813.652 kb on - strand, within ECD_03625 at 3813.697 kb on - strand, within ECD_03625 at 3813.705 kb on + strand, within ECD_03625 at 3813.708 kb on - strand, within ECD_03625 at 3813.708 kb on - strand, within ECD_03625 at 3813.798 kb on + strand, within ECD_03625 at 3813.798 kb on + strand, within ECD_03625 at 3813.808 kb on - strand, within ECD_03625 at 3813.822 kb on + strand, within ECD_03625 at 3813.927 kb on - strand, within ECD_03625 at 3813.927 kb on - strand, within ECD_03625 at 3813.927 kb on - strand, within ECD_03625 at 3813.927 kb on - strand, within ECD_03625 at 3814.112 kb on - strand, within ECD_03625 at 3814.191 kb on + strand, within ECD_03625 at 3814.353 kb on + strand at 3814.537 kb on - strand at 3814.537 kb on - strand at 3814.815 kb on - strand at 3814.974 kb on - strand, within ECD_03626 at 3814.983 kb on + strand, within ECD_03626 at 3815.049 kb on - strand, within ECD_03626 at 3815.074 kb on - strand, within ECD_03626 at 3815.126 kb on - strand, within ECD_03626 at 3815.126 kb on - strand, within ECD_03626 at 3815.204 kb on - strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.207 kb on + strand, within ECD_03626 at 3815.208 kb on - strand, within ECD_03626 at 3815.208 kb on - strand, within ECD_03626 at 3815.239 kb on - strand at 3815.247 kb on + strand at 3815.257 kb on - strand at 3815.257 kb on - strand at 3815.270 kb on + strand at 3815.271 kb on - strand at 3815.271 kb on - strand at 3815.273 kb on + strand at 3815.274 kb on - strand at 3815.284 kb on + strand at 3815.289 kb on + strand at 3815.289 kb on + strand at 3815.289 kb on + strand at 3815.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,811,568 - +0.9 3,811,610 - -0.3 3,811,712 - -0.7 3,811,787 + +0.7 3,811,875 + +0.3 3,811,943 + ECD_03624 0.14 +0.4 3,812,044 - ECD_03624 0.30 +0.4 3,812,044 - ECD_03624 0.30 -1.2 3,812,074 + ECD_03624 0.35 +0.6 3,812,074 + ECD_03624 0.35 +0.1 3,812,075 - ECD_03624 0.35 +0.2 3,812,075 - ECD_03624 0.35 +0.9 3,812,110 + ECD_03624 0.40 -0.3 3,812,111 - ECD_03624 0.41 +1.2 3,812,184 + ECD_03624 0.52 +1.3 3,812,230 - ECD_03624 0.60 -0.5 3,812,294 + ECD_03624 0.70 -0.1 3,812,294 + ECD_03624 0.70 -0.7 3,812,294 + ECD_03624 0.70 -1.4 3,812,295 - ECD_03624 0.70 +0.2 3,812,295 - ECD_03624 0.70 +0.3 3,812,330 - ECD_03624 0.76 +1.9 3,812,344 - ECD_03624 0.78 +0.1 3,812,344 - ECD_03624 0.78 +1.9 3,812,369 + ECD_03624 0.82 +0.4 3,812,370 - ECD_03624 0.82 +0.6 3,812,370 - ECD_03624 0.82 +0.6 3,812,385 + ECD_03624 0.84 +0.3 3,812,385 + ECD_03624 0.84 +0.0 3,812,386 - ECD_03624 0.85 +0.0 3,812,386 - ECD_03624 0.85 +0.1 3,812,394 + ECD_03624 0.86 -0.4 3,812,395 - ECD_03624 0.86 +0.2 3,812,403 - ECD_03624 0.87 +1.3 3,812,409 + ECD_03624 0.88 +0.9 3,812,409 + ECD_03624 0.88 -0.2 3,812,410 - ECD_03624 0.88 -0.7 3,812,410 - ECD_03624 0.88 -0.7 3,812,442 + -0.2 3,812,442 + -0.5 3,812,443 - +0.0 3,812,461 + -0.3 3,812,538 + +0.6 3,812,539 - +0.8 3,812,566 - +0.5 3,812,625 + +0.1 3,812,626 - -0.5 3,812,784 - ECD_03625 0.13 -0.1 3,812,877 - ECD_03625 0.18 -1.1 3,813,019 - ECD_03625 0.25 +0.5 3,813,153 + ECD_03625 0.32 +0.1 3,813,153 + ECD_03625 0.32 -1.0 3,813,153 + ECD_03625 0.32 -0.8 3,813,153 + ECD_03625 0.32 -0.3 3,813,153 + ECD_03625 0.32 +0.7 3,813,154 - ECD_03625 0.32 -0.3 3,813,154 - ECD_03625 0.32 -1.5 3,813,154 - ECD_03625 0.32 -0.6 3,813,154 - ECD_03625 0.32 -0.3 3,813,200 - ECD_03625 0.35 -0.8 3,813,210 - ECD_03625 0.35 -0.8 3,813,352 - ECD_03625 0.43 -1.0 3,813,454 - ECD_03625 0.48 -1.7 3,813,454 - ECD_03625 0.48 -0.5 3,813,502 - ECD_03625 0.51 -0.3 3,813,641 + ECD_03625 0.58 +1.3 3,813,641 + ECD_03625 0.58 -1.0 3,813,641 + ECD_03625 0.58 -1.2 3,813,642 - ECD_03625 0.58 +0.7 3,813,642 - ECD_03625 0.58 -0.9 3,813,652 - ECD_03625 0.59 -1.0 3,813,697 - ECD_03625 0.61 -0.4 3,813,705 + ECD_03625 0.61 -0.1 3,813,708 - ECD_03625 0.62 -1.6 3,813,708 - ECD_03625 0.62 -0.8 3,813,798 + ECD_03625 0.66 -0.7 3,813,798 + ECD_03625 0.66 +0.3 3,813,808 - ECD_03625 0.67 +0.1 3,813,822 + ECD_03625 0.68 -0.8 3,813,927 - ECD_03625 0.73 +0.1 3,813,927 - ECD_03625 0.73 +0.4 3,813,927 - ECD_03625 0.73 -0.3 3,813,927 - ECD_03625 0.73 +0.3 3,814,112 - ECD_03625 0.83 -0.6 3,814,191 + ECD_03625 0.87 -1.3 3,814,353 + +0.5 3,814,537 - -0.1 3,814,537 - -0.4 3,814,815 - -0.8 3,814,974 - ECD_03626 0.36 -0.0 3,814,983 + ECD_03626 0.38 +0.5 3,815,049 - ECD_03626 0.53 -0.2 3,815,074 - ECD_03626 0.59 -0.1 3,815,126 - ECD_03626 0.70 -0.7 3,815,126 - ECD_03626 0.70 -0.4 3,815,204 - ECD_03626 0.88 +0.1 3,815,207 + ECD_03626 0.89 -0.4 3,815,207 + ECD_03626 0.89 -1.2 3,815,207 + ECD_03626 0.89 +0.1 3,815,207 + ECD_03626 0.89 -0.9 3,815,207 + ECD_03626 0.89 -0.4 3,815,208 - ECD_03626 0.89 +0.2 3,815,208 - ECD_03626 0.89 -1.1 3,815,239 - +0.0 3,815,247 + -0.9 3,815,257 - +0.6 3,815,257 - -0.2 3,815,270 + -0.2 3,815,271 - +0.6 3,815,271 - +0.4 3,815,273 + -0.1 3,815,274 - -0.1 3,815,284 + -0.1 3,815,289 + +0.5 3,815,289 + +0.5 3,815,289 + +0.3 3,815,361 - +0.1
Or see this region's nucleotide sequence