Strain Fitness in Escherichia coli BL21 around ECD_03625

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03624 and ECD_03625 are separated by 63 nucleotidesECD_03625 and ECD_03626 are separated by 378 nucleotidesECD_03626 and ECD_03627 are separated by 89 nucleotides ECD_03624: ECD_03624 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein, at 3,811,858 to 3,812,481 _03624 ECD_03625: ECD_03625 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34, at 3,812,545 to 3,814,434 _03625 ECD_03626: ECD_03626 - FMN-binding protein MioC, at 3,814,813 to 3,815,256 _03626 ECD_03627: ECD_03627 - transcriptional activator of asnA; autorepressor, at 3,815,346 to 3,815,804 _03627 Position (kb) 3812 3813 3814 3815Strain fitness (log2 ratio) -1 0 1 2at 3811.568 kb on - strandat 3811.610 kb on - strandat 3811.712 kb on - strandat 3811.787 kb on + strandat 3811.875 kb on + strandat 3811.943 kb on + strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.044 kb on - strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.074 kb on + strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.075 kb on - strand, within ECD_03624at 3812.110 kb on + strand, within ECD_03624at 3812.111 kb on - strand, within ECD_03624at 3812.184 kb on + strand, within ECD_03624at 3812.230 kb on - strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.294 kb on + strand, within ECD_03624at 3812.295 kb on - strand, within ECD_03624at 3812.295 kb on - strand, within ECD_03624at 3812.330 kb on - strand, within ECD_03624at 3812.344 kb on - strand, within ECD_03624at 3812.344 kb on - strand, within ECD_03624at 3812.369 kb on + strand, within ECD_03624at 3812.370 kb on - strand, within ECD_03624at 3812.370 kb on - strand, within ECD_03624at 3812.385 kb on + strand, within ECD_03624at 3812.385 kb on + strand, within ECD_03624at 3812.386 kb on - strand, within ECD_03624at 3812.386 kb on - strand, within ECD_03624at 3812.394 kb on + strand, within ECD_03624at 3812.395 kb on - strand, within ECD_03624at 3812.403 kb on - strand, within ECD_03624at 3812.409 kb on + strand, within ECD_03624at 3812.409 kb on + strand, within ECD_03624at 3812.410 kb on - strand, within ECD_03624at 3812.410 kb on - strand, within ECD_03624at 3812.442 kb on + strandat 3812.442 kb on + strandat 3812.443 kb on - strandat 3812.461 kb on + strandat 3812.538 kb on + strandat 3812.539 kb on - strandat 3812.566 kb on - strandat 3812.625 kb on + strandat 3812.626 kb on - strandat 3812.784 kb on - strand, within ECD_03625at 3812.877 kb on - strand, within ECD_03625at 3813.019 kb on - strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.153 kb on + strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.154 kb on - strand, within ECD_03625at 3813.200 kb on - strand, within ECD_03625at 3813.210 kb on - strand, within ECD_03625at 3813.352 kb on - strand, within ECD_03625at 3813.454 kb on - strand, within ECD_03625at 3813.454 kb on - strand, within ECD_03625at 3813.502 kb on - strand, within ECD_03625at 3813.641 kb on + strand, within ECD_03625at 3813.641 kb on + strand, within ECD_03625at 3813.641 kb on + strand, within ECD_03625at 3813.642 kb on - strand, within ECD_03625at 3813.642 kb on - strand, within ECD_03625at 3813.652 kb on - strand, within ECD_03625at 3813.697 kb on - strand, within ECD_03625at 3813.705 kb on + strand, within ECD_03625at 3813.708 kb on - strand, within ECD_03625at 3813.708 kb on - strand, within ECD_03625at 3813.798 kb on + strand, within ECD_03625at 3813.798 kb on + strand, within ECD_03625at 3813.808 kb on - strand, within ECD_03625at 3813.822 kb on + strand, within ECD_03625at 3813.927 kb on - strand, within ECD_03625at 3813.927 kb on - strand, within ECD_03625at 3813.927 kb on - strand, within ECD_03625at 3813.927 kb on - strand, within ECD_03625at 3814.112 kb on - strand, within ECD_03625at 3814.191 kb on + strand, within ECD_03625at 3814.353 kb on + strandat 3814.537 kb on - strandat 3814.537 kb on - strandat 3814.815 kb on - strandat 3814.974 kb on - strand, within ECD_03626at 3814.983 kb on + strand, within ECD_03626at 3815.049 kb on - strand, within ECD_03626at 3815.074 kb on - strand, within ECD_03626at 3815.126 kb on - strand, within ECD_03626at 3815.126 kb on - strand, within ECD_03626at 3815.204 kb on - strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.207 kb on + strand, within ECD_03626at 3815.208 kb on - strand, within ECD_03626at 3815.208 kb on - strand, within ECD_03626at 3815.239 kb on - strandat 3815.247 kb on + strandat 3815.257 kb on - strandat 3815.257 kb on - strandat 3815.270 kb on + strandat 3815.271 kb on - strandat 3815.271 kb on - strandat 3815.273 kb on + strandat 3815.274 kb on - strandat 3815.284 kb on + strandat 3815.289 kb on + strandat 3815.289 kb on + strandat 3815.289 kb on + strandat 3815.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,811,568 - +0.9
3,811,610 - -0.3
3,811,712 - -0.7
3,811,787 + +0.7
3,811,875 + +0.3
3,811,943 + ECD_03624 0.14 +0.4
3,812,044 - ECD_03624 0.30 +0.4
3,812,044 - ECD_03624 0.30 -1.2
3,812,074 + ECD_03624 0.35 +0.6
3,812,074 + ECD_03624 0.35 +0.1
3,812,075 - ECD_03624 0.35 +0.2
3,812,075 - ECD_03624 0.35 +0.9
3,812,110 + ECD_03624 0.40 -0.3
3,812,111 - ECD_03624 0.41 +1.2
3,812,184 + ECD_03624 0.52 +1.3
3,812,230 - ECD_03624 0.60 -0.5
3,812,294 + ECD_03624 0.70 -0.1
3,812,294 + ECD_03624 0.70 -0.7
3,812,294 + ECD_03624 0.70 -1.4
3,812,295 - ECD_03624 0.70 +0.2
3,812,295 - ECD_03624 0.70 +0.3
3,812,330 - ECD_03624 0.76 +1.9
3,812,344 - ECD_03624 0.78 +0.1
3,812,344 - ECD_03624 0.78 +1.9
3,812,369 + ECD_03624 0.82 +0.4
3,812,370 - ECD_03624 0.82 +0.6
3,812,370 - ECD_03624 0.82 +0.6
3,812,385 + ECD_03624 0.84 +0.3
3,812,385 + ECD_03624 0.84 +0.0
3,812,386 - ECD_03624 0.85 +0.0
3,812,386 - ECD_03624 0.85 +0.1
3,812,394 + ECD_03624 0.86 -0.4
3,812,395 - ECD_03624 0.86 +0.2
3,812,403 - ECD_03624 0.87 +1.3
3,812,409 + ECD_03624 0.88 +0.9
3,812,409 + ECD_03624 0.88 -0.2
3,812,410 - ECD_03624 0.88 -0.7
3,812,410 - ECD_03624 0.88 -0.7
3,812,442 + -0.2
3,812,442 + -0.5
3,812,443 - +0.0
3,812,461 + -0.3
3,812,538 + +0.6
3,812,539 - +0.8
3,812,566 - +0.5
3,812,625 + +0.1
3,812,626 - -0.5
3,812,784 - ECD_03625 0.13 -0.1
3,812,877 - ECD_03625 0.18 -1.1
3,813,019 - ECD_03625 0.25 +0.5
3,813,153 + ECD_03625 0.32 +0.1
3,813,153 + ECD_03625 0.32 -1.0
3,813,153 + ECD_03625 0.32 -0.8
3,813,153 + ECD_03625 0.32 -0.3
3,813,153 + ECD_03625 0.32 +0.7
3,813,154 - ECD_03625 0.32 -0.3
3,813,154 - ECD_03625 0.32 -1.5
3,813,154 - ECD_03625 0.32 -0.6
3,813,154 - ECD_03625 0.32 -0.3
3,813,200 - ECD_03625 0.35 -0.8
3,813,210 - ECD_03625 0.35 -0.8
3,813,352 - ECD_03625 0.43 -1.0
3,813,454 - ECD_03625 0.48 -1.7
3,813,454 - ECD_03625 0.48 -0.5
3,813,502 - ECD_03625 0.51 -0.3
3,813,641 + ECD_03625 0.58 +1.3
3,813,641 + ECD_03625 0.58 -1.0
3,813,641 + ECD_03625 0.58 -1.2
3,813,642 - ECD_03625 0.58 +0.7
3,813,642 - ECD_03625 0.58 -0.9
3,813,652 - ECD_03625 0.59 -1.0
3,813,697 - ECD_03625 0.61 -0.4
3,813,705 + ECD_03625 0.61 -0.1
3,813,708 - ECD_03625 0.62 -1.6
3,813,708 - ECD_03625 0.62 -0.8
3,813,798 + ECD_03625 0.66 -0.7
3,813,798 + ECD_03625 0.66 +0.3
3,813,808 - ECD_03625 0.67 +0.1
3,813,822 + ECD_03625 0.68 -0.8
3,813,927 - ECD_03625 0.73 +0.1
3,813,927 - ECD_03625 0.73 +0.4
3,813,927 - ECD_03625 0.73 -0.3
3,813,927 - ECD_03625 0.73 +0.3
3,814,112 - ECD_03625 0.83 -0.6
3,814,191 + ECD_03625 0.87 -1.3
3,814,353 + +0.5
3,814,537 - -0.1
3,814,537 - -0.4
3,814,815 - -0.8
3,814,974 - ECD_03626 0.36 -0.0
3,814,983 + ECD_03626 0.38 +0.5
3,815,049 - ECD_03626 0.53 -0.2
3,815,074 - ECD_03626 0.59 -0.1
3,815,126 - ECD_03626 0.70 -0.7
3,815,126 - ECD_03626 0.70 -0.4
3,815,204 - ECD_03626 0.88 +0.1
3,815,207 + ECD_03626 0.89 -0.4
3,815,207 + ECD_03626 0.89 -1.2
3,815,207 + ECD_03626 0.89 +0.1
3,815,207 + ECD_03626 0.89 -0.9
3,815,207 + ECD_03626 0.89 -0.4
3,815,208 - ECD_03626 0.89 +0.2
3,815,208 - ECD_03626 0.89 -1.1
3,815,239 - +0.0
3,815,247 + -0.9
3,815,257 - +0.6
3,815,257 - -0.2
3,815,270 + -0.2
3,815,271 - +0.6
3,815,271 - +0.4
3,815,273 + -0.1
3,815,274 - -0.1
3,815,284 + -0.1
3,815,289 + +0.5
3,815,289 + +0.5
3,815,289 + +0.3
3,815,361 - +0.1

Or see this region's nucleotide sequence