Strain Fitness in Escherichia coli BL21 around ECD_03590

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03589 and ECD_03590 are separated by 105 nucleotidesECD_03590 and ECD_03591 are separated by 242 nucleotidesECD_03591 and ECD_03592 are separated by 220 nucleotides ECD_03589: ECD_03589 - membrane protein insertase, at 3,773,872 to 3,775,518 _03589 ECD_03590: ECD_03590 - tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase, at 3,775,624 to 3,776,988 _03590 ECD_03591: ECD_03591 - tryptophanase leader peptide, at 3,777,231 to 3,777,305 _03591 ECD_03592: ECD_03592 - tryptophanase/L-cysteine desulfhydrase, PLP-dependent, at 3,777,526 to 3,778,941 _03592 Position (kb) 3775 3776 3777Strain fitness (log2 ratio) -1 0 1 2at 3775.540 kb on + strandat 3775.642 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.743 kb on - strandat 3775.746 kb on + strandat 3775.905 kb on - strand, within ECD_03590at 3776.059 kb on - strand, within ECD_03590at 3776.059 kb on - strand, within ECD_03590at 3776.128 kb on + strand, within ECD_03590at 3776.628 kb on + strand, within ECD_03590at 3776.802 kb on - strand, within ECD_03590at 3776.802 kb on - strand, within ECD_03590at 3776.842 kb on - strand, within ECD_03590at 3776.912 kb on + strandat 3776.977 kb on - strandat 3776.982 kb on + strandat 3776.996 kb on + strandat 3776.997 kb on - strandat 3777.282 kb on - strand, within ECD_03591at 3777.446 kb on + strandat 3777.589 kb on - strandat 3777.618 kb on + strandat 3777.622 kb on - strandat 3777.712 kb on - strand, within ECD_03592at 3777.712 kb on - strand, within ECD_03592at 3777.712 kb on - strand, within ECD_03592at 3777.712 kb on - strand, within ECD_03592at 3777.712 kb on - strand, within ECD_03592at 3777.763 kb on + strand, within ECD_03592at 3777.802 kb on + strand, within ECD_03592at 3777.808 kb on + strand, within ECD_03592at 3777.809 kb on - strand, within ECD_03592at 3777.809 kb on - strand, within ECD_03592at 3777.851 kb on - strand, within ECD_03592at 3777.851 kb on - strand, within ECD_03592at 3777.853 kb on - strand, within ECD_03592at 3777.926 kb on - strand, within ECD_03592at 3777.985 kb on + strand, within ECD_03592

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,775,540 + +2.0
3,775,642 - -0.8
3,775,743 - -0.3
3,775,743 - -1.7
3,775,743 - -1.1
3,775,743 - -1.0
3,775,746 + -0.7
3,775,905 - ECD_03590 0.21 -0.6
3,776,059 - ECD_03590 0.32 +0.2
3,776,059 - ECD_03590 0.32 -0.7
3,776,128 + ECD_03590 0.37 -1.2
3,776,628 + ECD_03590 0.74 -1.0
3,776,802 - ECD_03590 0.86 +0.2
3,776,802 - ECD_03590 0.86 +0.0
3,776,842 - ECD_03590 0.89 +0.0
3,776,912 + -1.0
3,776,977 - -0.7
3,776,982 + +0.3
3,776,996 + +1.0
3,776,997 - +0.4
3,777,282 - ECD_03591 0.68 -0.2
3,777,446 + +0.1
3,777,589 - +0.5
3,777,618 + -0.1
3,777,622 - +0.5
3,777,712 - ECD_03592 0.13 +0.1
3,777,712 - ECD_03592 0.13 -0.5
3,777,712 - ECD_03592 0.13 -0.4
3,777,712 - ECD_03592 0.13 +0.1
3,777,712 - ECD_03592 0.13 -0.6
3,777,763 + ECD_03592 0.17 +0.5
3,777,802 + ECD_03592 0.19 -0.1
3,777,808 + ECD_03592 0.20 +0.0
3,777,809 - ECD_03592 0.20 -1.1
3,777,809 - ECD_03592 0.20 -0.4
3,777,851 - ECD_03592 0.23 -0.1
3,777,851 - ECD_03592 0.23 -1.7
3,777,853 - ECD_03592 0.23 -0.9
3,777,926 - ECD_03592 0.28 +0.6
3,777,985 + ECD_03592 0.32 -0.1

Or see this region's nucleotide sequence