Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03488 and ECD_03489 overlap by 4 nucleotides ECD_03489 and ECD_03490 are separated by 412 nucleotides
ECD_03488: ECD_03488 - UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I, at 3,672,738 to 3,673,862
_03488
ECD_03489: ECD_03489 - lipopolysaccharide core biosynthesis protein, at 3,673,859 to 3,674,917
_03489
ECD_03490: ECD_03490 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase), at 3,675,330 to 3,676,607
_03490
Position (kb)
3673
3674
3675 Strain fitness (log2 ratio)
-2
-1
0
1 at 3672.939 kb on - strand, within ECD_03488 at 3673.042 kb on - strand, within ECD_03488 at 3673.044 kb on + strand, within ECD_03488 at 3673.168 kb on + strand, within ECD_03488 at 3673.170 kb on + strand, within ECD_03488 at 3673.171 kb on - strand, within ECD_03488 at 3673.171 kb on - strand, within ECD_03488 at 3673.270 kb on - strand, within ECD_03488 at 3673.344 kb on - strand, within ECD_03488 at 3673.354 kb on + strand, within ECD_03488 at 3673.355 kb on - strand, within ECD_03488 at 3673.399 kb on + strand, within ECD_03488 at 3673.839 kb on - strand at 3673.942 kb on - strand at 3674.075 kb on - strand, within ECD_03489 at 3674.075 kb on - strand, within ECD_03489 at 3674.075 kb on - strand, within ECD_03489 at 3674.075 kb on - strand, within ECD_03489 at 3674.077 kb on + strand, within ECD_03489 at 3674.286 kb on - strand, within ECD_03489 at 3674.286 kb on - strand, within ECD_03489 at 3674.286 kb on - strand, within ECD_03489 at 3674.286 kb on - strand, within ECD_03489 at 3674.286 kb on - strand, within ECD_03489 at 3674.347 kb on + strand, within ECD_03489 at 3674.364 kb on + strand, within ECD_03489 at 3674.365 kb on - strand, within ECD_03489 at 3674.489 kb on - strand, within ECD_03489 at 3674.489 kb on - strand, within ECD_03489 at 3674.569 kb on - strand, within ECD_03489 at 3674.612 kb on + strand, within ECD_03489 at 3674.614 kb on + strand, within ECD_03489 at 3674.614 kb on + strand, within ECD_03489 at 3674.614 kb on + strand, within ECD_03489 at 3674.614 kb on + strand, within ECD_03489 at 3674.615 kb on - strand, within ECD_03489 at 3674.648 kb on - strand, within ECD_03489 at 3674.656 kb on - strand, within ECD_03489 at 3674.660 kb on - strand, within ECD_03489 at 3674.660 kb on - strand, within ECD_03489 at 3674.669 kb on + strand, within ECD_03489 at 3674.670 kb on - strand, within ECD_03489 at 3674.670 kb on - strand, within ECD_03489 at 3674.670 kb on - strand, within ECD_03489 at 3674.673 kb on - strand, within ECD_03489 at 3674.839 kb on + strand at 3674.859 kb on - strand at 3674.994 kb on - strand at 3675.035 kb on - strand at 3675.035 kb on - strand at 3675.129 kb on + strand at 3675.167 kb on + strand at 3675.168 kb on - strand at 3675.243 kb on + strand at 3675.244 kb on - strand at 3675.247 kb on + strand at 3675.248 kb on - strand at 3675.285 kb on + strand at 3675.285 kb on + strand at 3675.289 kb on + strand at 3675.289 kb on + strand at 3675.289 kb on + strand at 3675.289 kb on + strand at 3675.289 kb on + strand at 3675.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,672,939 - ECD_03488 0.18 -1.4 3,673,042 - ECD_03488 0.27 -1.8 3,673,044 + ECD_03488 0.27 +1.3 3,673,168 + ECD_03488 0.38 -0.1 3,673,170 + ECD_03488 0.38 -1.1 3,673,171 - ECD_03488 0.38 +0.9 3,673,171 - ECD_03488 0.38 -1.2 3,673,270 - ECD_03488 0.47 -0.6 3,673,344 - ECD_03488 0.54 -0.1 3,673,354 + ECD_03488 0.55 -0.3 3,673,355 - ECD_03488 0.55 -2.1 3,673,399 + ECD_03488 0.59 -2.0 3,673,839 - -1.1 3,673,942 - -1.3 3,674,075 - ECD_03489 0.20 -0.3 3,674,075 - ECD_03489 0.20 -1.4 3,674,075 - ECD_03489 0.20 -1.1 3,674,075 - ECD_03489 0.20 -1.4 3,674,077 + ECD_03489 0.21 -0.7 3,674,286 - ECD_03489 0.40 -0.9 3,674,286 - ECD_03489 0.40 +0.5 3,674,286 - ECD_03489 0.40 -0.2 3,674,286 - ECD_03489 0.40 +0.6 3,674,286 - ECD_03489 0.40 +0.3 3,674,347 + ECD_03489 0.46 -2.0 3,674,364 + ECD_03489 0.48 -0.4 3,674,365 - ECD_03489 0.48 -0.3 3,674,489 - ECD_03489 0.59 -0.5 3,674,489 - ECD_03489 0.59 -0.0 3,674,569 - ECD_03489 0.67 -0.3 3,674,612 + ECD_03489 0.71 -0.2 3,674,614 + ECD_03489 0.71 -2.1 3,674,614 + ECD_03489 0.71 -0.9 3,674,614 + ECD_03489 0.71 -1.2 3,674,614 + ECD_03489 0.71 -1.0 3,674,615 - ECD_03489 0.71 -0.4 3,674,648 - ECD_03489 0.75 -0.6 3,674,656 - ECD_03489 0.75 -0.4 3,674,660 - ECD_03489 0.76 -1.1 3,674,660 - ECD_03489 0.76 -0.6 3,674,669 + ECD_03489 0.76 -1.2 3,674,670 - ECD_03489 0.77 -1.3 3,674,670 - ECD_03489 0.77 -0.9 3,674,670 - ECD_03489 0.77 -0.7 3,674,673 - ECD_03489 0.77 -0.7 3,674,839 + -0.9 3,674,859 - -0.1 3,674,994 - -0.5 3,675,035 - -1.0 3,675,035 - -0.4 3,675,129 + +0.1 3,675,167 + +0.4 3,675,168 - -0.0 3,675,243 + -0.4 3,675,244 - -0.4 3,675,247 + +0.2 3,675,248 - +0.2 3,675,285 + +0.4 3,675,285 + -1.4 3,675,289 + -0.6 3,675,289 + +0.5 3,675,289 + -0.9 3,675,289 + +0.3 3,675,289 + -0.0 3,675,293 + -1.4
Or see this region's nucleotide sequence