Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03484 and ECD_03485 overlap by 82 nucleotides ECD_03485 and ECD_03486 are separated by 570 nucleotides ECD_03486 and ECD_03487 are separated by 15 nucleotides ECD_03487 and ECD_03488 overlap by 8 nucleotides
ECD_03484: ECD_03484 - IS1 protein InsB, at 3,669,648 to 3,670,151
_03484
ECD_03485: ECD_03485 - IS1 protein InsA, at 3,670,070 to 3,670,345
_03485
ECD_03486: ECD_03486 - UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO, at 3,670,916 to 3,671,932
_03486
ECD_03487: ECD_03487 - kinase that phosphorylates core heptose of lipopolysaccharide, at 3,671,948 to 3,672,745
_03487
ECD_03488: ECD_03488 - UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I, at 3,672,738 to 3,673,862
_03488
Position (kb)
3670
3671
3672 Strain fitness (log2 ratio)
-1
0
1
2 at 3670.370 kb on + strand at 3670.435 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.438 kb on - strand at 3670.474 kb on - strand at 3670.562 kb on + strand at 3670.586 kb on + strand at 3671.221 kb on + strand, within ECD_03486 at 3671.363 kb on - strand, within ECD_03486 at 3671.366 kb on - strand, within ECD_03486 at 3671.410 kb on + strand, within ECD_03486 at 3671.410 kb on + strand, within ECD_03486 at 3671.411 kb on - strand, within ECD_03486 at 3671.447 kb on - strand, within ECD_03486 at 3671.479 kb on + strand, within ECD_03486 at 3671.598 kb on + strand, within ECD_03486 at 3671.609 kb on - strand, within ECD_03486 at 3671.771 kb on - strand, within ECD_03486 at 3671.920 kb on - strand at 3671.933 kb on - strand at 3672.253 kb on + strand, within ECD_03487 at 3672.253 kb on + strand, within ECD_03487 at 3672.255 kb on + strand, within ECD_03487 at 3672.472 kb on + strand, within ECD_03487 at 3672.534 kb on - strand, within ECD_03487 at 3672.791 kb on - strand at 3672.791 kb on - strand at 3672.793 kb on - strand at 3672.793 kb on - strand at 3672.804 kb on - strand at 3672.804 kb on - strand at 3672.811 kb on + strand at 3672.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,670,370 + +0.9 3,670,435 - +0.6 3,670,438 - -1.0 3,670,438 - +0.2 3,670,438 - +0.1 3,670,438 - -0.0 3,670,438 - +0.6 3,670,438 - -0.1 3,670,438 - +0.3 3,670,474 - +0.4 3,670,562 + -0.1 3,670,586 + -0.2 3,671,221 + ECD_03486 0.30 -0.4 3,671,363 - ECD_03486 0.44 +0.2 3,671,366 - ECD_03486 0.44 -0.2 3,671,410 + ECD_03486 0.49 -1.2 3,671,410 + ECD_03486 0.49 -0.5 3,671,411 - ECD_03486 0.49 -1.2 3,671,447 - ECD_03486 0.52 -1.1 3,671,479 + ECD_03486 0.55 +0.1 3,671,598 + ECD_03486 0.67 -1.3 3,671,609 - ECD_03486 0.68 -0.3 3,671,771 - ECD_03486 0.84 +0.7 3,671,920 - -0.5 3,671,933 - -0.7 3,672,253 + ECD_03487 0.38 -0.6 3,672,253 + ECD_03487 0.38 -0.3 3,672,255 + ECD_03487 0.38 -0.3 3,672,472 + ECD_03487 0.66 +0.8 3,672,534 - ECD_03487 0.73 +1.3 3,672,791 - -0.2 3,672,791 - +1.2 3,672,793 - -0.4 3,672,793 - +0.3 3,672,804 - -0.2 3,672,804 - +0.3 3,672,811 + +1.8 3,672,812 - -1.2
Or see this region's nucleotide sequence