Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03434 and ECD_03435 overlap by 7 nucleotides ECD_03435 and ECD_03436 are separated by 31 nucleotides ECD_03436 and ECD_03437 are separated by 225 nucleotides
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933
_03435
ECD_03436: ECD_03436 - putative regulatory protein, at 3,612,965 to 3,613,780
_03436
ECD_03437: ECD_03437 - putative permease, at 3,614,006 to 3,615,406
_03437
Position (kb)
3612
3613
3614 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3612.116 kb on - strand, within ECD_03434 at 3612.126 kb on - strand, within ECD_03434 at 3612.236 kb on - strand at 3612.237 kb on + strand at 3612.237 kb on + strand at 3612.238 kb on - strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.243 kb on - strand at 3612.332 kb on + strand, within ECD_03435 at 3612.356 kb on + strand, within ECD_03435 at 3612.357 kb on - strand, within ECD_03435 at 3612.430 kb on - strand, within ECD_03435 at 3612.430 kb on - strand, within ECD_03435 at 3612.488 kb on - strand, within ECD_03435 at 3612.522 kb on + strand, within ECD_03435 at 3612.792 kb on + strand, within ECD_03435 at 3612.800 kb on + strand, within ECD_03435 at 3612.801 kb on - strand, within ECD_03435 at 3612.801 kb on - strand, within ECD_03435 at 3612.820 kb on + strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.821 kb on - strand, within ECD_03435 at 3612.823 kb on - strand, within ECD_03435 at 3612.830 kb on + strand, within ECD_03435 at 3612.892 kb on + strand at 3612.893 kb on - strand at 3612.900 kb on + strand at 3612.919 kb on + strand at 3612.920 kb on - strand at 3612.922 kb on + strand at 3612.976 kb on + strand at 3612.977 kb on - strand at 3613.017 kb on - strand at 3613.051 kb on - strand, within ECD_03436 at 3613.215 kb on + strand, within ECD_03436 at 3613.478 kb on - strand, within ECD_03436 at 3613.595 kb on + strand, within ECD_03436 at 3613.626 kb on - strand, within ECD_03436 at 3613.784 kb on + strand at 3613.989 kb on - strand at 3614.001 kb on + strand at 3614.002 kb on - strand at 3614.048 kb on - strand at 3614.116 kb on - strand at 3614.118 kb on + strand at 3614.118 kb on + strand at 3614.119 kb on - strand at 3614.119 kb on - strand at 3614.119 kb on - strand at 3614.172 kb on + strand, within ECD_03437 at 3614.298 kb on + strand, within ECD_03437 at 3614.299 kb on - strand, within ECD_03437 at 3614.393 kb on + strand, within ECD_03437 at 3614.393 kb on + strand, within ECD_03437 at 3614.416 kb on + strand, within ECD_03437 at 3614.544 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.557 kb on - strand, within ECD_03437 at 3614.756 kb on - strand, within ECD_03437
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,612,116 - ECD_03434 0.85 -1.1 3,612,126 - ECD_03434 0.86 +0.2 3,612,236 - -0.1 3,612,237 + +0.7 3,612,237 + -0.9 3,612,238 - -0.1 3,612,242 + +0.2 3,612,242 + -0.5 3,612,242 + +0.5 3,612,243 - -0.2 3,612,332 + ECD_03435 0.14 -0.3 3,612,356 + ECD_03435 0.17 +0.3 3,612,357 - ECD_03435 0.17 -1.5 3,612,430 - ECD_03435 0.28 -0.8 3,612,430 - ECD_03435 0.28 -0.1 3,612,488 - ECD_03435 0.36 -0.8 3,612,522 + ECD_03435 0.41 +1.0 3,612,792 + ECD_03435 0.80 +0.7 3,612,800 + ECD_03435 0.81 +0.1 3,612,801 - ECD_03435 0.81 +0.7 3,612,801 - ECD_03435 0.81 -0.3 3,612,820 + ECD_03435 0.84 +0.1 3,612,821 - ECD_03435 0.84 -1.0 3,612,821 - ECD_03435 0.84 -0.0 3,612,821 - ECD_03435 0.84 +0.1 3,612,821 - ECD_03435 0.84 -0.2 3,612,823 - ECD_03435 0.84 +0.4 3,612,830 + ECD_03435 0.85 -2.3 3,612,892 + +0.2 3,612,893 - +0.1 3,612,900 + +0.1 3,612,919 + +0.5 3,612,920 - -2.0 3,612,922 + +1.1 3,612,976 + -0.0 3,612,977 - +0.7 3,613,017 - +0.6 3,613,051 - ECD_03436 0.11 +0.4 3,613,215 + ECD_03436 0.31 -0.0 3,613,478 - ECD_03436 0.63 -0.4 3,613,595 + ECD_03436 0.77 +0.3 3,613,626 - ECD_03436 0.81 +1.2 3,613,784 + -1.4 3,613,989 - -0.8 3,614,001 + -0.8 3,614,002 - -0.5 3,614,048 - -0.2 3,614,116 - +0.4 3,614,118 + +0.1 3,614,118 + -0.0 3,614,119 - +1.2 3,614,119 - +1.6 3,614,119 - +0.2 3,614,172 + ECD_03437 0.12 +0.3 3,614,298 + ECD_03437 0.21 -0.1 3,614,299 - ECD_03437 0.21 +0.0 3,614,393 + ECD_03437 0.28 -1.2 3,614,393 + ECD_03437 0.28 +0.2 3,614,416 + ECD_03437 0.29 -1.3 3,614,544 + ECD_03437 0.38 -1.3 3,614,556 + ECD_03437 0.39 +0.3 3,614,556 + ECD_03437 0.39 +0.9 3,614,556 + ECD_03437 0.39 +0.5 3,614,556 + ECD_03437 0.39 -1.6 3,614,556 + ECD_03437 0.39 -2.0 3,614,556 + ECD_03437 0.39 +0.1 3,614,556 + ECD_03437 0.39 +2.2 3,614,557 - ECD_03437 0.39 -1.4 3,614,756 - ECD_03437 0.54 +0.9
Or see this region's nucleotide sequence