Strain Fitness in Escherichia coli BL21 around ECD_03436

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03434 and ECD_03435 overlap by 7 nucleotidesECD_03435 and ECD_03436 are separated by 31 nucleotidesECD_03436 and ECD_03437 are separated by 225 nucleotides ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244 _03434 ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933 _03435 ECD_03436: ECD_03436 - putative regulatory protein, at 3,612,965 to 3,613,780 _03436 ECD_03437: ECD_03437 - putative permease, at 3,614,006 to 3,615,406 _03437 Position (kb) 3612 3613 3614Strain fitness (log2 ratio) -2 -1 0 1 2at 3612.116 kb on - strand, within ECD_03434at 3612.126 kb on - strand, within ECD_03434at 3612.236 kb on - strandat 3612.237 kb on + strandat 3612.237 kb on + strandat 3612.238 kb on - strandat 3612.242 kb on + strandat 3612.242 kb on + strandat 3612.242 kb on + strandat 3612.243 kb on - strandat 3612.332 kb on + strand, within ECD_03435at 3612.356 kb on + strand, within ECD_03435at 3612.357 kb on - strand, within ECD_03435at 3612.430 kb on - strand, within ECD_03435at 3612.430 kb on - strand, within ECD_03435at 3612.488 kb on - strand, within ECD_03435at 3612.522 kb on + strand, within ECD_03435at 3612.792 kb on + strand, within ECD_03435at 3612.800 kb on + strand, within ECD_03435at 3612.801 kb on - strand, within ECD_03435at 3612.801 kb on - strand, within ECD_03435at 3612.820 kb on + strand, within ECD_03435at 3612.821 kb on - strand, within ECD_03435at 3612.821 kb on - strand, within ECD_03435at 3612.821 kb on - strand, within ECD_03435at 3612.821 kb on - strand, within ECD_03435at 3612.823 kb on - strand, within ECD_03435at 3612.830 kb on + strand, within ECD_03435at 3612.892 kb on + strandat 3612.893 kb on - strandat 3612.900 kb on + strandat 3612.919 kb on + strandat 3612.920 kb on - strandat 3612.922 kb on + strandat 3612.976 kb on + strandat 3612.977 kb on - strandat 3613.017 kb on - strandat 3613.051 kb on - strand, within ECD_03436at 3613.215 kb on + strand, within ECD_03436at 3613.478 kb on - strand, within ECD_03436at 3613.595 kb on + strand, within ECD_03436at 3613.626 kb on - strand, within ECD_03436at 3613.784 kb on + strandat 3613.989 kb on - strandat 3614.001 kb on + strandat 3614.002 kb on - strandat 3614.048 kb on - strandat 3614.116 kb on - strandat 3614.118 kb on + strandat 3614.118 kb on + strandat 3614.119 kb on - strandat 3614.119 kb on - strandat 3614.119 kb on - strandat 3614.172 kb on + strand, within ECD_03437at 3614.298 kb on + strand, within ECD_03437at 3614.299 kb on - strand, within ECD_03437at 3614.393 kb on + strand, within ECD_03437at 3614.393 kb on + strand, within ECD_03437at 3614.416 kb on + strand, within ECD_03437at 3614.544 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.557 kb on - strand, within ECD_03437at 3614.756 kb on - strand, within ECD_03437

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,612,116 - ECD_03434 0.85 -1.1
3,612,126 - ECD_03434 0.86 +0.2
3,612,236 - -0.1
3,612,237 + +0.7
3,612,237 + -0.9
3,612,238 - -0.1
3,612,242 + +0.2
3,612,242 + -0.5
3,612,242 + +0.5
3,612,243 - -0.2
3,612,332 + ECD_03435 0.14 -0.3
3,612,356 + ECD_03435 0.17 +0.3
3,612,357 - ECD_03435 0.17 -1.5
3,612,430 - ECD_03435 0.28 -0.8
3,612,430 - ECD_03435 0.28 -0.1
3,612,488 - ECD_03435 0.36 -0.8
3,612,522 + ECD_03435 0.41 +1.0
3,612,792 + ECD_03435 0.80 +0.7
3,612,800 + ECD_03435 0.81 +0.1
3,612,801 - ECD_03435 0.81 +0.7
3,612,801 - ECD_03435 0.81 -0.3
3,612,820 + ECD_03435 0.84 +0.1
3,612,821 - ECD_03435 0.84 -1.0
3,612,821 - ECD_03435 0.84 -0.0
3,612,821 - ECD_03435 0.84 +0.1
3,612,821 - ECD_03435 0.84 -0.2
3,612,823 - ECD_03435 0.84 +0.4
3,612,830 + ECD_03435 0.85 -2.3
3,612,892 + +0.2
3,612,893 - +0.1
3,612,900 + +0.1
3,612,919 + +0.5
3,612,920 - -2.0
3,612,922 + +1.1
3,612,976 + -0.0
3,612,977 - +0.7
3,613,017 - +0.6
3,613,051 - ECD_03436 0.11 +0.4
3,613,215 + ECD_03436 0.31 -0.0
3,613,478 - ECD_03436 0.63 -0.4
3,613,595 + ECD_03436 0.77 +0.3
3,613,626 - ECD_03436 0.81 +1.2
3,613,784 + -1.4
3,613,989 - -0.8
3,614,001 + -0.8
3,614,002 - -0.5
3,614,048 - -0.2
3,614,116 - +0.4
3,614,118 + +0.1
3,614,118 + -0.0
3,614,119 - +1.2
3,614,119 - +1.6
3,614,119 - +0.2
3,614,172 + ECD_03437 0.12 +0.3
3,614,298 + ECD_03437 0.21 -0.1
3,614,299 - ECD_03437 0.21 +0.0
3,614,393 + ECD_03437 0.28 -1.2
3,614,393 + ECD_03437 0.28 +0.2
3,614,416 + ECD_03437 0.29 -1.3
3,614,544 + ECD_03437 0.38 -1.3
3,614,556 + ECD_03437 0.39 +0.3
3,614,556 + ECD_03437 0.39 +0.9
3,614,556 + ECD_03437 0.39 +0.5
3,614,556 + ECD_03437 0.39 -1.6
3,614,556 + ECD_03437 0.39 -2.0
3,614,556 + ECD_03437 0.39 +0.1
3,614,556 + ECD_03437 0.39 +2.2
3,614,557 - ECD_03437 0.39 -1.4
3,614,756 - ECD_03437 0.54 +0.9

Or see this region's nucleotide sequence