Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03424 and ECD_03425 are separated by 150 nucleotides ECD_03425 and ECD_03426 are separated by 101 nucleotides ECD_03426 and ECD_03427 are separated by 200 nucleotides
ECD_03424: ECD_03424 - valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase, at 3,601,857 to 3,603,110
_03424
ECD_03425: ECD_03425 - putative hydrogenase, 4Fe-4S ferredoxin-type component, at 3,603,261 to 3,603,734
_03425
ECD_03426: ECD_03426 - transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon, at 3,603,836 to 3,604,684
_03426
ECD_03427: ECD_03427 - 2,3-diketo-L-gulonate reductase, NADH-dependent, at 3,604,885 to 3,605,883
_03427
Position (kb)
3603
3604
3605 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3602.885 kb on - strand, within ECD_03424 at 3602.907 kb on - strand, within ECD_03424 at 3603.002 kb on + strand at 3603.003 kb on - strand at 3603.014 kb on + strand at 3603.015 kb on - strand at 3603.015 kb on - strand at 3603.027 kb on + strand at 3603.027 kb on + strand at 3603.027 kb on + strand at 3603.028 kb on - strand at 3603.160 kb on + strand at 3603.386 kb on + strand, within ECD_03425 at 3603.449 kb on + strand, within ECD_03425 at 3603.722 kb on + strand at 3603.723 kb on - strand at 3603.837 kb on + strand at 3603.837 kb on + strand at 3603.837 kb on + strand at 3603.837 kb on + strand at 3603.837 kb on + strand at 3603.838 kb on - strand at 3603.838 kb on - strand at 3603.868 kb on + strand at 3603.869 kb on - strand at 3603.869 kb on - strand at 3603.869 kb on - strand at 3603.884 kb on - strand at 3603.994 kb on - strand, within ECD_03426 at 3603.997 kb on + strand, within ECD_03426 at 3603.998 kb on - strand, within ECD_03426 at 3603.998 kb on - strand, within ECD_03426 at 3603.998 kb on - strand, within ECD_03426 at 3603.998 kb on - strand, within ECD_03426 at 3604.019 kb on - strand, within ECD_03426 at 3604.117 kb on + strand, within ECD_03426 at 3604.198 kb on - strand, within ECD_03426 at 3604.198 kb on - strand, within ECD_03426 at 3604.198 kb on - strand, within ECD_03426 at 3604.222 kb on - strand, within ECD_03426 at 3604.231 kb on + strand, within ECD_03426 at 3604.231 kb on + strand, within ECD_03426 at 3604.232 kb on - strand, within ECD_03426 at 3604.243 kb on + strand, within ECD_03426 at 3604.244 kb on - strand, within ECD_03426 at 3604.245 kb on + strand, within ECD_03426 at 3604.245 kb on + strand, within ECD_03426 at 3604.286 kb on - strand, within ECD_03426 at 3604.287 kb on + strand, within ECD_03426 at 3604.328 kb on - strand, within ECD_03426 at 3604.473 kb on + strand, within ECD_03426 at 3604.473 kb on + strand, within ECD_03426 at 3604.487 kb on + strand, within ECD_03426 at 3604.488 kb on - strand, within ECD_03426 at 3604.499 kb on + strand, within ECD_03426 at 3604.500 kb on - strand, within ECD_03426 at 3604.513 kb on + strand, within ECD_03426 at 3604.514 kb on - strand, within ECD_03426 at 3604.520 kb on - strand, within ECD_03426 at 3604.520 kb on - strand, within ECD_03426 at 3604.520 kb on - strand, within ECD_03426 at 3604.570 kb on - strand, within ECD_03426 at 3604.907 kb on + strand at 3604.931 kb on + strand at 3604.931 kb on + strand at 3605.009 kb on - strand, within ECD_03427 at 3605.091 kb on + strand, within ECD_03427 at 3605.091 kb on + strand, within ECD_03427 at 3605.091 kb on + strand, within ECD_03427 at 3605.092 kb on - strand, within ECD_03427 at 3605.092 kb on - strand, within ECD_03427 at 3605.092 kb on - strand, within ECD_03427 at 3605.092 kb on - strand, within ECD_03427 at 3605.216 kb on + strand, within ECD_03427 at 3605.217 kb on - strand, within ECD_03427 at 3605.220 kb on + strand, within ECD_03427 at 3605.221 kb on - strand, within ECD_03427 at 3605.221 kb on - strand, within ECD_03427 at 3605.278 kb on + strand, within ECD_03427 at 3605.279 kb on - strand, within ECD_03427 at 3605.279 kb on - strand, within ECD_03427 at 3605.401 kb on - strand, within ECD_03427 at 3605.401 kb on - strand, within ECD_03427 at 3605.433 kb on - strand, within ECD_03427 at 3605.586 kb on + strand, within ECD_03427
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,602,885 - ECD_03424 0.82 -0.2 3,602,907 - ECD_03424 0.84 -0.3 3,603,002 + +0.0 3,603,003 - -0.4 3,603,014 + +0.3 3,603,015 - -0.3 3,603,015 - +0.0 3,603,027 + -0.7 3,603,027 + -0.7 3,603,027 + -0.4 3,603,028 - -1.6 3,603,160 + -0.3 3,603,386 + ECD_03425 0.26 +0.1 3,603,449 + ECD_03425 0.40 +1.6 3,603,722 + -1.0 3,603,723 - -1.0 3,603,837 + -0.5 3,603,837 + +0.1 3,603,837 + -1.6 3,603,837 + -0.5 3,603,837 + -1.4 3,603,838 - -0.1 3,603,838 - +0.1 3,603,868 + -0.3 3,603,869 - -0.1 3,603,869 - -0.3 3,603,869 - -0.1 3,603,884 - +0.7 3,603,994 - ECD_03426 0.19 -1.7 3,603,997 + ECD_03426 0.19 +0.3 3,603,998 - ECD_03426 0.19 -0.2 3,603,998 - ECD_03426 0.19 +0.8 3,603,998 - ECD_03426 0.19 -0.2 3,603,998 - ECD_03426 0.19 -1.0 3,604,019 - ECD_03426 0.22 -1.0 3,604,117 + ECD_03426 0.33 -0.0 3,604,198 - ECD_03426 0.43 -1.8 3,604,198 - ECD_03426 0.43 -1.6 3,604,198 - ECD_03426 0.43 -0.9 3,604,222 - ECD_03426 0.45 +2.1 3,604,231 + ECD_03426 0.47 -0.1 3,604,231 + ECD_03426 0.47 -0.5 3,604,232 - ECD_03426 0.47 -0.7 3,604,243 + ECD_03426 0.48 +2.1 3,604,244 - ECD_03426 0.48 +0.3 3,604,245 + ECD_03426 0.48 +0.3 3,604,245 + ECD_03426 0.48 -0.6 3,604,286 - ECD_03426 0.53 +1.4 3,604,287 + ECD_03426 0.53 +0.4 3,604,328 - ECD_03426 0.58 -0.5 3,604,473 + ECD_03426 0.75 -1.1 3,604,473 + ECD_03426 0.75 -0.3 3,604,487 + ECD_03426 0.77 +0.3 3,604,488 - ECD_03426 0.77 -1.1 3,604,499 + ECD_03426 0.78 -0.9 3,604,500 - ECD_03426 0.78 -1.0 3,604,513 + ECD_03426 0.80 +0.9 3,604,514 - ECD_03426 0.80 +0.1 3,604,520 - ECD_03426 0.81 -1.3 3,604,520 - ECD_03426 0.81 +0.6 3,604,520 - ECD_03426 0.81 -1.2 3,604,570 - ECD_03426 0.86 -0.1 3,604,907 + +0.5 3,604,931 + -0.1 3,604,931 + +0.1 3,605,009 - ECD_03427 0.12 +1.2 3,605,091 + ECD_03427 0.21 -0.3 3,605,091 + ECD_03427 0.21 -0.4 3,605,091 + ECD_03427 0.21 -0.3 3,605,092 - ECD_03427 0.21 +0.8 3,605,092 - ECD_03427 0.21 -0.0 3,605,092 - ECD_03427 0.21 +0.5 3,605,092 - ECD_03427 0.21 -0.8 3,605,216 + ECD_03427 0.33 +0.4 3,605,217 - ECD_03427 0.33 -0.3 3,605,220 + ECD_03427 0.34 +0.0 3,605,221 - ECD_03427 0.34 +0.6 3,605,221 - ECD_03427 0.34 +0.2 3,605,278 + ECD_03427 0.39 -0.1 3,605,279 - ECD_03427 0.39 +0.6 3,605,279 - ECD_03427 0.39 +0.0 3,605,401 - ECD_03427 0.52 +0.9 3,605,401 - ECD_03427 0.52 -0.0 3,605,433 - ECD_03427 0.55 +0.3 3,605,586 + ECD_03427 0.70 +0.6
Or see this region's nucleotide sequence