Strain Fitness in Escherichia coli BL21 around ECD_03426

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03424 and ECD_03425 are separated by 150 nucleotidesECD_03425 and ECD_03426 are separated by 101 nucleotidesECD_03426 and ECD_03427 are separated by 200 nucleotides ECD_03424: ECD_03424 - valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase, at 3,601,857 to 3,603,110 _03424 ECD_03425: ECD_03425 - putative hydrogenase, 4Fe-4S ferredoxin-type component, at 3,603,261 to 3,603,734 _03425 ECD_03426: ECD_03426 - transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon, at 3,603,836 to 3,604,684 _03426 ECD_03427: ECD_03427 - 2,3-diketo-L-gulonate reductase, NADH-dependent, at 3,604,885 to 3,605,883 _03427 Position (kb) 3603 3604 3605Strain fitness (log2 ratio) -2 -1 0 1 2at 3602.885 kb on - strand, within ECD_03424at 3602.907 kb on - strand, within ECD_03424at 3603.002 kb on + strandat 3603.003 kb on - strandat 3603.014 kb on + strandat 3603.015 kb on - strandat 3603.015 kb on - strandat 3603.027 kb on + strandat 3603.027 kb on + strandat 3603.027 kb on + strandat 3603.028 kb on - strandat 3603.160 kb on + strandat 3603.386 kb on + strand, within ECD_03425at 3603.449 kb on + strand, within ECD_03425at 3603.722 kb on + strandat 3603.723 kb on - strandat 3603.837 kb on + strandat 3603.837 kb on + strandat 3603.837 kb on + strandat 3603.837 kb on + strandat 3603.837 kb on + strandat 3603.838 kb on - strandat 3603.838 kb on - strandat 3603.868 kb on + strandat 3603.869 kb on - strandat 3603.869 kb on - strandat 3603.869 kb on - strandat 3603.884 kb on - strandat 3603.994 kb on - strand, within ECD_03426at 3603.997 kb on + strand, within ECD_03426at 3603.998 kb on - strand, within ECD_03426at 3603.998 kb on - strand, within ECD_03426at 3603.998 kb on - strand, within ECD_03426at 3603.998 kb on - strand, within ECD_03426at 3604.019 kb on - strand, within ECD_03426at 3604.117 kb on + strand, within ECD_03426at 3604.198 kb on - strand, within ECD_03426at 3604.198 kb on - strand, within ECD_03426at 3604.198 kb on - strand, within ECD_03426at 3604.222 kb on - strand, within ECD_03426at 3604.231 kb on + strand, within ECD_03426at 3604.231 kb on + strand, within ECD_03426at 3604.232 kb on - strand, within ECD_03426at 3604.243 kb on + strand, within ECD_03426at 3604.244 kb on - strand, within ECD_03426at 3604.245 kb on + strand, within ECD_03426at 3604.245 kb on + strand, within ECD_03426at 3604.286 kb on - strand, within ECD_03426at 3604.287 kb on + strand, within ECD_03426at 3604.328 kb on - strand, within ECD_03426at 3604.473 kb on + strand, within ECD_03426at 3604.473 kb on + strand, within ECD_03426at 3604.487 kb on + strand, within ECD_03426at 3604.488 kb on - strand, within ECD_03426at 3604.499 kb on + strand, within ECD_03426at 3604.500 kb on - strand, within ECD_03426at 3604.513 kb on + strand, within ECD_03426at 3604.514 kb on - strand, within ECD_03426at 3604.520 kb on - strand, within ECD_03426at 3604.520 kb on - strand, within ECD_03426at 3604.520 kb on - strand, within ECD_03426at 3604.570 kb on - strand, within ECD_03426at 3604.907 kb on + strandat 3604.931 kb on + strandat 3604.931 kb on + strandat 3605.009 kb on - strand, within ECD_03427at 3605.091 kb on + strand, within ECD_03427at 3605.091 kb on + strand, within ECD_03427at 3605.091 kb on + strand, within ECD_03427at 3605.092 kb on - strand, within ECD_03427at 3605.092 kb on - strand, within ECD_03427at 3605.092 kb on - strand, within ECD_03427at 3605.092 kb on - strand, within ECD_03427at 3605.216 kb on + strand, within ECD_03427at 3605.217 kb on - strand, within ECD_03427at 3605.220 kb on + strand, within ECD_03427at 3605.221 kb on - strand, within ECD_03427at 3605.221 kb on - strand, within ECD_03427at 3605.278 kb on + strand, within ECD_03427at 3605.279 kb on - strand, within ECD_03427at 3605.279 kb on - strand, within ECD_03427at 3605.401 kb on - strand, within ECD_03427at 3605.401 kb on - strand, within ECD_03427at 3605.433 kb on - strand, within ECD_03427at 3605.586 kb on + strand, within ECD_03427

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,602,885 - ECD_03424 0.82 -0.2
3,602,907 - ECD_03424 0.84 -0.3
3,603,002 + +0.0
3,603,003 - -0.4
3,603,014 + +0.3
3,603,015 - -0.3
3,603,015 - +0.0
3,603,027 + -0.7
3,603,027 + -0.7
3,603,027 + -0.4
3,603,028 - -1.6
3,603,160 + -0.3
3,603,386 + ECD_03425 0.26 +0.1
3,603,449 + ECD_03425 0.40 +1.6
3,603,722 + -1.0
3,603,723 - -1.0
3,603,837 + -0.5
3,603,837 + +0.1
3,603,837 + -1.6
3,603,837 + -0.5
3,603,837 + -1.4
3,603,838 - -0.1
3,603,838 - +0.1
3,603,868 + -0.3
3,603,869 - -0.1
3,603,869 - -0.3
3,603,869 - -0.1
3,603,884 - +0.7
3,603,994 - ECD_03426 0.19 -1.7
3,603,997 + ECD_03426 0.19 +0.3
3,603,998 - ECD_03426 0.19 -0.2
3,603,998 - ECD_03426 0.19 +0.8
3,603,998 - ECD_03426 0.19 -0.2
3,603,998 - ECD_03426 0.19 -1.0
3,604,019 - ECD_03426 0.22 -1.0
3,604,117 + ECD_03426 0.33 -0.0
3,604,198 - ECD_03426 0.43 -1.8
3,604,198 - ECD_03426 0.43 -1.6
3,604,198 - ECD_03426 0.43 -0.9
3,604,222 - ECD_03426 0.45 +2.1
3,604,231 + ECD_03426 0.47 -0.1
3,604,231 + ECD_03426 0.47 -0.5
3,604,232 - ECD_03426 0.47 -0.7
3,604,243 + ECD_03426 0.48 +2.1
3,604,244 - ECD_03426 0.48 +0.3
3,604,245 + ECD_03426 0.48 +0.3
3,604,245 + ECD_03426 0.48 -0.6
3,604,286 - ECD_03426 0.53 +1.4
3,604,287 + ECD_03426 0.53 +0.4
3,604,328 - ECD_03426 0.58 -0.5
3,604,473 + ECD_03426 0.75 -1.1
3,604,473 + ECD_03426 0.75 -0.3
3,604,487 + ECD_03426 0.77 +0.3
3,604,488 - ECD_03426 0.77 -1.1
3,604,499 + ECD_03426 0.78 -0.9
3,604,500 - ECD_03426 0.78 -1.0
3,604,513 + ECD_03426 0.80 +0.9
3,604,514 - ECD_03426 0.80 +0.1
3,604,520 - ECD_03426 0.81 -1.3
3,604,520 - ECD_03426 0.81 +0.6
3,604,520 - ECD_03426 0.81 -1.2
3,604,570 - ECD_03426 0.86 -0.1
3,604,907 + +0.5
3,604,931 + -0.1
3,604,931 + +0.1
3,605,009 - ECD_03427 0.12 +1.2
3,605,091 + ECD_03427 0.21 -0.3
3,605,091 + ECD_03427 0.21 -0.4
3,605,091 + ECD_03427 0.21 -0.3
3,605,092 - ECD_03427 0.21 +0.8
3,605,092 - ECD_03427 0.21 -0.0
3,605,092 - ECD_03427 0.21 +0.5
3,605,092 - ECD_03427 0.21 -0.8
3,605,216 + ECD_03427 0.33 +0.4
3,605,217 - ECD_03427 0.33 -0.3
3,605,220 + ECD_03427 0.34 +0.0
3,605,221 - ECD_03427 0.34 +0.6
3,605,221 - ECD_03427 0.34 +0.2
3,605,278 + ECD_03427 0.39 -0.1
3,605,279 - ECD_03427 0.39 +0.6
3,605,279 - ECD_03427 0.39 +0.0
3,605,401 - ECD_03427 0.52 +0.9
3,605,401 - ECD_03427 0.52 -0.0
3,605,433 - ECD_03427 0.55 +0.3
3,605,586 + ECD_03427 0.70 +0.6

Or see this region's nucleotide sequence