Strain Fitness in Escherichia coli BL21 around ECD_03314

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03313 and ECD_03314 are separated by 149 nucleotidesECD_03314 and ECD_03315 overlap by 11 nucleotidesECD_03315 and ECD_03316 are separated by 2 nucleotidesECD_03316 and ECD_03317 are separated by 140 nucleotides ECD_03313: ECD_03313 - Signal Recognition Particle (SRP) receptor, at 3,465,131 to 3,466,627 _03313 ECD_03314: ECD_03314 - 16S rRNA m(2)G966 methyltransferase, SAM-dependent, at 3,466,777 to 3,467,373 _03314 ECD_03315: ECD_03315 - DUF1145 family protein, at 3,467,363 to 3,467,632 _03315 ECD_03316: ECD_03316 - DUF2500 family protein, at 3,467,635 to 3,467,994 _03316 ECD_03317: ECD_03317 - TMEM86 family putative inner membrane protein, at 3,468,135 to 3,468,761 _03317 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -3 -2 -1 0 1at 3466.675 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.679 kb on - strandat 3466.683 kb on - strandat 3466.683 kb on - strandat 3466.683 kb on - strandat 3466.683 kb on - strandat 3466.683 kb on - strandat 3466.711 kb on - strandat 3466.717 kb on + strandat 3466.717 kb on + strandat 3466.717 kb on + strandat 3466.722 kb on + strandat 3466.745 kb on + strandat 3466.745 kb on + strandat 3466.745 kb on + strandat 3466.745 kb on + strandat 3466.745 kb on + strandat 3466.746 kb on - strandat 3466.746 kb on - strandat 3466.746 kb on - strandat 3466.752 kb on + strandat 3466.752 kb on + strandat 3466.752 kb on + strandat 3466.752 kb on + strandat 3466.753 kb on - strandat 3466.774 kb on - strandat 3467.048 kb on + strand, within ECD_03314at 3467.084 kb on + strand, within ECD_03314at 3467.084 kb on + strand, within ECD_03314at 3467.180 kb on + strand, within ECD_03314at 3467.239 kb on + strand, within ECD_03314at 3467.294 kb on + strand, within ECD_03314at 3467.335 kb on + strandat 3467.497 kb on + strand, within ECD_03315at 3467.636 kb on + strandat 3467.636 kb on + strandat 3467.636 kb on + strandat 3467.636 kb on + strandat 3467.636 kb on + strandat 3467.636 kb on + strandat 3467.674 kb on - strand, within ECD_03316at 3467.675 kb on + strand, within ECD_03316at 3467.675 kb on + strand, within ECD_03316at 3467.675 kb on + strand, within ECD_03316at 3467.714 kb on + strand, within ECD_03316at 3467.715 kb on - strand, within ECD_03316at 3467.715 kb on - strand, within ECD_03316at 3467.787 kb on + strand, within ECD_03316at 3467.788 kb on - strand, within ECD_03316at 3467.806 kb on + strand, within ECD_03316at 3467.807 kb on - strand, within ECD_03316at 3467.898 kb on + strand, within ECD_03316at 3467.898 kb on + strand, within ECD_03316at 3467.926 kb on - strand, within ECD_03316at 3468.029 kb on + strandat 3468.029 kb on + strandat 3468.041 kb on + strandat 3468.041 kb on + strandat 3468.041 kb on + strandat 3468.041 kb on + strandat 3468.042 kb on - strandat 3468.042 kb on - strandat 3468.091 kb on + strandat 3468.132 kb on - strandat 3468.287 kb on + strand, within ECD_03317at 3468.287 kb on + strand, within ECD_03317at 3468.288 kb on - strand, within ECD_03317at 3468.288 kb on - strand, within ECD_03317at 3468.288 kb on - strand, within ECD_03317at 3468.291 kb on + strand, within ECD_03317at 3468.292 kb on - strand, within ECD_03317at 3468.292 kb on - strand, within ECD_03317at 3468.292 kb on - strand, within ECD_03317at 3468.292 kb on - strand, within ECD_03317at 3468.366 kb on + strand, within ECD_03317at 3468.366 kb on + strand, within ECD_03317at 3468.367 kb on - strand, within ECD_03317

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,466,675 - -2.1
3,466,679 - -0.2
3,466,679 - -0.2
3,466,679 - -0.7
3,466,679 - -1.0
3,466,679 - +0.2
3,466,679 - +0.7
3,466,679 - -0.2
3,466,683 - +0.4
3,466,683 - -1.4
3,466,683 - -0.3
3,466,683 - -0.7
3,466,683 - +1.1
3,466,711 - -0.2
3,466,717 + -0.6
3,466,717 + +0.0
3,466,717 + +1.4
3,466,722 + +0.2
3,466,745 + -0.1
3,466,745 + +0.4
3,466,745 + +0.0
3,466,745 + -0.4
3,466,745 + +0.6
3,466,746 - -0.7
3,466,746 - -0.4
3,466,746 - +0.1
3,466,752 + -0.2
3,466,752 + -1.3
3,466,752 + -1.0
3,466,752 + -0.7
3,466,753 - -0.6
3,466,774 - +0.7
3,467,048 + ECD_03314 0.45 -1.7
3,467,084 + ECD_03314 0.51 -0.7
3,467,084 + ECD_03314 0.51 -1.4
3,467,180 + ECD_03314 0.68 -1.8
3,467,239 + ECD_03314 0.77 -0.9
3,467,294 + ECD_03314 0.87 -0.7
3,467,335 + +0.4
3,467,497 + ECD_03315 0.50 +0.7
3,467,636 + -0.1
3,467,636 + +0.6
3,467,636 + +0.3
3,467,636 + +0.1
3,467,636 + +0.4
3,467,636 + +0.8
3,467,674 - ECD_03316 0.11 +0.3
3,467,675 + ECD_03316 0.11 -0.1
3,467,675 + ECD_03316 0.11 -0.2
3,467,675 + ECD_03316 0.11 -0.1
3,467,714 + ECD_03316 0.22 -0.0
3,467,715 - ECD_03316 0.22 +0.2
3,467,715 - ECD_03316 0.22 -0.3
3,467,787 + ECD_03316 0.42 -0.4
3,467,788 - ECD_03316 0.42 -1.2
3,467,806 + ECD_03316 0.47 -0.4
3,467,807 - ECD_03316 0.48 +0.3
3,467,898 + ECD_03316 0.73 +0.3
3,467,898 + ECD_03316 0.73 +0.5
3,467,926 - ECD_03316 0.81 +0.3
3,468,029 + +0.6
3,468,029 + -1.9
3,468,041 + +1.1
3,468,041 + -0.1
3,468,041 + -0.3
3,468,041 + -3.1
3,468,042 - +0.4
3,468,042 - -1.0
3,468,091 + +0.4
3,468,132 - +0.2
3,468,287 + ECD_03317 0.24 +1.1
3,468,287 + ECD_03317 0.24 -0.5
3,468,288 - ECD_03317 0.24 -0.7
3,468,288 - ECD_03317 0.24 -2.7
3,468,288 - ECD_03317 0.24 +1.2
3,468,291 + ECD_03317 0.25 +1.4
3,468,292 - ECD_03317 0.25 +1.1
3,468,292 - ECD_03317 0.25 -0.3
3,468,292 - ECD_03317 0.25 +0.5
3,468,292 - ECD_03317 0.25 +0.4
3,468,366 + ECD_03317 0.37 -0.4
3,468,366 + ECD_03317 0.37 +0.7
3,468,367 - ECD_03317 0.37 +0.7

Or see this region's nucleotide sequence