Strain Fitness in Escherichia coli BL21 around ECD_03257

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03256 and ECD_03257 overlap by 4 nucleotidesECD_03257 and ECD_03258 are separated by 227 nucleotidesECD_03258 and ECD_03259 are separated by 96 nucleotides ECD_03256: ECD_03256 - sensory histidine kinase in two-component regulatory system with OmpR, at 3,394,896 to 3,396,248 _03256 ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964 _03257 ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668 _03258 ECD_03259: ECD_03259 - putative transcriptional accessory protein, at 3,397,765 to 3,400,086 _03259 Position (kb) 3396 3397Strain fitness (log2 ratio) -2 -1 0 1at 3395.389 kb on + strand, within ECD_03256at 3395.429 kb on + strand, within ECD_03256at 3395.430 kb on - strand, within ECD_03256at 3395.510 kb on + strand, within ECD_03256at 3395.511 kb on - strand, within ECD_03256at 3395.567 kb on + strand, within ECD_03256at 3395.627 kb on - strand, within ECD_03256at 3395.648 kb on + strand, within ECD_03256at 3395.649 kb on - strand, within ECD_03256at 3395.714 kb on + strand, within ECD_03256at 3395.747 kb on + strand, within ECD_03256at 3395.748 kb on - strand, within ECD_03256at 3395.759 kb on + strand, within ECD_03256at 3395.759 kb on + strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.926 kb on - strand, within ECD_03256at 3395.935 kb on + strand, within ECD_03256at 3395.936 kb on - strand, within ECD_03256at 3396.094 kb on + strand, within ECD_03256at 3396.107 kb on + strand, within ECD_03256at 3396.157 kb on + strandat 3396.158 kb on - strandat 3396.277 kb on - strandat 3396.661 kb on - strand, within ECD_03257at 3396.724 kb on + strand, within ECD_03257at 3396.797 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.897 kb on + strandat 3396.952 kb on - strandat 3396.952 kb on - strandat 3396.998 kb on - strandat 3397.005 kb on + strandat 3397.038 kb on - strandat 3397.061 kb on - strandat 3397.080 kb on + strandat 3397.093 kb on - strandat 3397.135 kb on + strandat 3397.147 kb on - strandat 3397.148 kb on + strandat 3397.148 kb on + strandat 3397.245 kb on + strand, within ECD_03258at 3397.245 kb on + strand, within ECD_03258at 3397.249 kb on + strand, within ECD_03258at 3397.249 kb on + strand, within ECD_03258at 3397.333 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.340 kb on - strand, within ECD_03258at 3397.340 kb on - strand, within ECD_03258at 3397.390 kb on - strand, within ECD_03258at 3397.420 kb on + strand, within ECD_03258at 3397.503 kb on + strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.612 kb on - strand, within ECD_03258at 3397.636 kb on + strandat 3397.636 kb on + strandat 3397.637 kb on - strandat 3397.637 kb on - strandat 3397.637 kb on - strandat 3397.641 kb on + strandat 3397.642 kb on - strandat 3397.680 kb on - strandat 3397.722 kb on + strandat 3397.722 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.860 kb on + strandat 3397.861 kb on - strandat 3397.861 kb on - strandat 3397.882 kb on + strandat 3397.926 kb on + strandat 3397.926 kb on + strandat 3397.927 kb on - strandat 3397.948 kb on + strandat 3397.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,395,389 + ECD_03256 0.36 +0.2
3,395,429 + ECD_03256 0.39 +0.5
3,395,430 - ECD_03256 0.39 -1.5
3,395,510 + ECD_03256 0.45 +0.6
3,395,511 - ECD_03256 0.45 +0.4
3,395,567 + ECD_03256 0.50 +1.2
3,395,627 - ECD_03256 0.54 -1.2
3,395,648 + ECD_03256 0.56 -0.9
3,395,649 - ECD_03256 0.56 +0.4
3,395,714 + ECD_03256 0.60 -1.1
3,395,747 + ECD_03256 0.63 -1.0
3,395,748 - ECD_03256 0.63 -0.4
3,395,759 + ECD_03256 0.64 -0.5
3,395,759 + ECD_03256 0.64 -0.2
3,395,760 - ECD_03256 0.64 -0.0
3,395,760 - ECD_03256 0.64 -0.3
3,395,760 - ECD_03256 0.64 +0.3
3,395,926 - ECD_03256 0.76 -1.1
3,395,935 + ECD_03256 0.77 +0.1
3,395,936 - ECD_03256 0.77 +0.7
3,396,094 + ECD_03256 0.89 +0.1
3,396,107 + ECD_03256 0.90 -1.1
3,396,157 + +1.1
3,396,158 - -0.6
3,396,277 - -0.5
3,396,661 - ECD_03257 0.58 -0.1
3,396,724 + ECD_03257 0.67 -2.2
3,396,797 + ECD_03257 0.77 -0.5
3,396,811 + ECD_03257 0.79 -1.2
3,396,811 + ECD_03257 0.79 +0.2
3,396,812 - ECD_03257 0.79 +0.3
3,396,812 - ECD_03257 0.79 +0.6
3,396,897 + -2.0
3,396,952 - -0.7
3,396,952 - +0.2
3,396,998 - -1.2
3,397,005 + -1.8
3,397,038 - +0.3
3,397,061 - +0.6
3,397,080 + +0.4
3,397,093 - -0.3
3,397,135 + +0.2
3,397,147 - -0.4
3,397,148 + +0.3
3,397,148 + +0.5
3,397,245 + ECD_03258 0.11 +0.1
3,397,245 + ECD_03258 0.11 +0.3
3,397,249 + ECD_03258 0.12 -1.2
3,397,249 + ECD_03258 0.12 -0.0
3,397,333 + ECD_03258 0.30 -0.4
3,397,339 + ECD_03258 0.31 -0.7
3,397,339 + ECD_03258 0.31 +0.4
3,397,339 + ECD_03258 0.31 +0.5
3,397,339 + ECD_03258 0.31 +0.1
3,397,340 - ECD_03258 0.31 +0.3
3,397,340 - ECD_03258 0.31 -0.5
3,397,390 - ECD_03258 0.42 -0.1
3,397,420 + ECD_03258 0.48 +0.1
3,397,503 + ECD_03258 0.65 -0.1
3,397,541 - ECD_03258 0.73 +0.1
3,397,541 - ECD_03258 0.73 -0.7
3,397,541 - ECD_03258 0.73 -0.4
3,397,612 - ECD_03258 0.88 +1.3
3,397,636 + -1.0
3,397,636 + +0.0
3,397,637 - -1.0
3,397,637 - +0.9
3,397,637 - -0.6
3,397,641 + +0.8
3,397,642 - +0.3
3,397,680 - +0.4
3,397,722 + +0.2
3,397,722 + -1.2
3,397,726 + -1.0
3,397,726 + -0.5
3,397,726 + +0.4
3,397,726 + -0.6
3,397,726 + -0.3
3,397,860 + -0.4
3,397,861 - +0.5
3,397,861 - +0.8
3,397,882 + +0.9
3,397,926 + -0.2
3,397,926 + -1.4
3,397,927 - -0.4
3,397,948 + -1.4
3,397,948 + +0.7

Or see this region's nucleotide sequence