Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03256 and ECD_03257 overlap by 4 nucleotides ECD_03257 and ECD_03258 are separated by 227 nucleotides ECD_03258 and ECD_03259 are separated by 96 nucleotides
ECD_03256: ECD_03256 - sensory histidine kinase in two-component regulatory system with OmpR, at 3,394,896 to 3,396,248
_03256
ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964
_03257
ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668
_03258
ECD_03259: ECD_03259 - putative transcriptional accessory protein, at 3,397,765 to 3,400,086
_03259
Position (kb)
3396
3397 Strain fitness (log2 ratio)
-2
-1
0
1 at 3395.389 kb on + strand, within ECD_03256 at 3395.429 kb on + strand, within ECD_03256 at 3395.430 kb on - strand, within ECD_03256 at 3395.510 kb on + strand, within ECD_03256 at 3395.511 kb on - strand, within ECD_03256 at 3395.567 kb on + strand, within ECD_03256 at 3395.627 kb on - strand, within ECD_03256 at 3395.648 kb on + strand, within ECD_03256 at 3395.649 kb on - strand, within ECD_03256 at 3395.714 kb on + strand, within ECD_03256 at 3395.747 kb on + strand, within ECD_03256 at 3395.748 kb on - strand, within ECD_03256 at 3395.759 kb on + strand, within ECD_03256 at 3395.759 kb on + strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.760 kb on - strand, within ECD_03256 at 3395.926 kb on - strand, within ECD_03256 at 3395.935 kb on + strand, within ECD_03256 at 3395.936 kb on - strand, within ECD_03256 at 3396.094 kb on + strand, within ECD_03256 at 3396.107 kb on + strand, within ECD_03256 at 3396.157 kb on + strand at 3396.158 kb on - strand at 3396.277 kb on - strand at 3396.661 kb on - strand, within ECD_03257 at 3396.724 kb on + strand, within ECD_03257 at 3396.797 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.897 kb on + strand at 3396.952 kb on - strand at 3396.952 kb on - strand at 3396.998 kb on - strand at 3397.005 kb on + strand at 3397.038 kb on - strand at 3397.061 kb on - strand at 3397.080 kb on + strand at 3397.093 kb on - strand at 3397.135 kb on + strand at 3397.147 kb on - strand at 3397.148 kb on + strand at 3397.148 kb on + strand at 3397.245 kb on + strand, within ECD_03258 at 3397.245 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.333 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.390 kb on - strand, within ECD_03258 at 3397.420 kb on + strand, within ECD_03258 at 3397.503 kb on + strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.612 kb on - strand, within ECD_03258 at 3397.636 kb on + strand at 3397.636 kb on + strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.641 kb on + strand at 3397.642 kb on - strand at 3397.680 kb on - strand at 3397.722 kb on + strand at 3397.722 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.860 kb on + strand at 3397.861 kb on - strand at 3397.861 kb on - strand at 3397.882 kb on + strand at 3397.926 kb on + strand at 3397.926 kb on + strand at 3397.927 kb on - strand at 3397.948 kb on + strand at 3397.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,395,389 + ECD_03256 0.36 +0.2 3,395,429 + ECD_03256 0.39 +0.5 3,395,430 - ECD_03256 0.39 -1.5 3,395,510 + ECD_03256 0.45 +0.6 3,395,511 - ECD_03256 0.45 +0.4 3,395,567 + ECD_03256 0.50 +1.2 3,395,627 - ECD_03256 0.54 -1.2 3,395,648 + ECD_03256 0.56 -0.9 3,395,649 - ECD_03256 0.56 +0.4 3,395,714 + ECD_03256 0.60 -1.1 3,395,747 + ECD_03256 0.63 -1.0 3,395,748 - ECD_03256 0.63 -0.4 3,395,759 + ECD_03256 0.64 -0.5 3,395,759 + ECD_03256 0.64 -0.2 3,395,760 - ECD_03256 0.64 -0.0 3,395,760 - ECD_03256 0.64 -0.3 3,395,760 - ECD_03256 0.64 +0.3 3,395,926 - ECD_03256 0.76 -1.1 3,395,935 + ECD_03256 0.77 +0.1 3,395,936 - ECD_03256 0.77 +0.7 3,396,094 + ECD_03256 0.89 +0.1 3,396,107 + ECD_03256 0.90 -1.1 3,396,157 + +1.1 3,396,158 - -0.6 3,396,277 - -0.5 3,396,661 - ECD_03257 0.58 -0.1 3,396,724 + ECD_03257 0.67 -2.2 3,396,797 + ECD_03257 0.77 -0.5 3,396,811 + ECD_03257 0.79 -1.2 3,396,811 + ECD_03257 0.79 +0.2 3,396,812 - ECD_03257 0.79 +0.3 3,396,812 - ECD_03257 0.79 +0.6 3,396,897 + -2.0 3,396,952 - -0.7 3,396,952 - +0.2 3,396,998 - -1.2 3,397,005 + -1.8 3,397,038 - +0.3 3,397,061 - +0.6 3,397,080 + +0.4 3,397,093 - -0.3 3,397,135 + +0.2 3,397,147 - -0.4 3,397,148 + +0.3 3,397,148 + +0.5 3,397,245 + ECD_03258 0.11 +0.1 3,397,245 + ECD_03258 0.11 +0.3 3,397,249 + ECD_03258 0.12 -1.2 3,397,249 + ECD_03258 0.12 -0.0 3,397,333 + ECD_03258 0.30 -0.4 3,397,339 + ECD_03258 0.31 -0.7 3,397,339 + ECD_03258 0.31 +0.4 3,397,339 + ECD_03258 0.31 +0.5 3,397,339 + ECD_03258 0.31 +0.1 3,397,340 - ECD_03258 0.31 +0.3 3,397,340 - ECD_03258 0.31 -0.5 3,397,390 - ECD_03258 0.42 -0.1 3,397,420 + ECD_03258 0.48 +0.1 3,397,503 + ECD_03258 0.65 -0.1 3,397,541 - ECD_03258 0.73 +0.1 3,397,541 - ECD_03258 0.73 -0.7 3,397,541 - ECD_03258 0.73 -0.4 3,397,612 - ECD_03258 0.88 +1.3 3,397,636 + -1.0 3,397,636 + +0.0 3,397,637 - -1.0 3,397,637 - +0.9 3,397,637 - -0.6 3,397,641 + +0.8 3,397,642 - +0.3 3,397,680 - +0.4 3,397,722 + +0.2 3,397,722 + -1.2 3,397,726 + -1.0 3,397,726 + -0.5 3,397,726 + +0.4 3,397,726 + -0.6 3,397,726 + -0.3 3,397,860 + -0.4 3,397,861 - +0.5 3,397,861 - +0.8 3,397,882 + +0.9 3,397,926 + -0.2 3,397,926 + -1.4 3,397,927 - -0.4 3,397,948 + -1.4 3,397,948 + +0.7
Or see this region's nucleotide sequence