Strain Fitness in Escherichia coli BL21 around ECD_03256

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03255 and ECD_03256 are separated by 75 nucleotidesECD_03256 and ECD_03257 overlap by 4 nucleotidesECD_03257 and ECD_03258 are separated by 227 nucleotides ECD_03255: ECD_03255 - phosphoenolpyruvate carboxykinase [ATP], at 3,393,198 to 3,394,820 _03255 ECD_03256: ECD_03256 - sensory histidine kinase in two-component regulatory system with OmpR, at 3,394,896 to 3,396,248 _03256 ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964 _03257 ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668 _03258 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -2 -1 0 1at 3394.034 kb on + strand, within ECD_03255at 3394.212 kb on + strand, within ECD_03255at 3394.212 kb on + strand, within ECD_03255at 3394.212 kb on + strand, within ECD_03255at 3394.213 kb on - strand, within ECD_03255at 3394.213 kb on - strand, within ECD_03255at 3394.213 kb on - strand, within ECD_03255at 3394.232 kb on + strand, within ECD_03255at 3394.263 kb on - strand, within ECD_03255at 3394.269 kb on - strand, within ECD_03255at 3394.481 kb on + strand, within ECD_03255at 3394.482 kb on - strand, within ECD_03255at 3394.482 kb on - strand, within ECD_03255at 3394.506 kb on + strand, within ECD_03255at 3394.506 kb on + strand, within ECD_03255at 3394.507 kb on - strand, within ECD_03255at 3394.545 kb on - strand, within ECD_03255at 3394.545 kb on - strand, within ECD_03255at 3394.554 kb on - strand, within ECD_03255at 3394.663 kb on + strandat 3394.664 kb on - strandat 3394.696 kb on - strandat 3394.767 kb on + strandat 3394.839 kb on + strandat 3394.839 kb on + strandat 3394.839 kb on + strandat 3394.839 kb on + strandat 3394.839 kb on + strandat 3394.840 kb on - strandat 3394.840 kb on - strandat 3394.843 kb on + strandat 3394.844 kb on - strandat 3394.844 kb on - strandat 3394.844 kb on - strandat 3394.851 kb on - strandat 3394.855 kb on + strandat 3394.856 kb on - strandat 3394.857 kb on + strandat 3394.857 kb on + strandat 3394.858 kb on - strandat 3394.858 kb on - strandat 3395.051 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.099 kb on + strand, within ECD_03256at 3395.100 kb on - strand, within ECD_03256at 3395.100 kb on - strand, within ECD_03256at 3395.100 kb on - strand, within ECD_03256at 3395.100 kb on - strand, within ECD_03256at 3395.389 kb on + strand, within ECD_03256at 3395.429 kb on + strand, within ECD_03256at 3395.430 kb on - strand, within ECD_03256at 3395.510 kb on + strand, within ECD_03256at 3395.511 kb on - strand, within ECD_03256at 3395.567 kb on + strand, within ECD_03256at 3395.627 kb on - strand, within ECD_03256at 3395.648 kb on + strand, within ECD_03256at 3395.649 kb on - strand, within ECD_03256at 3395.714 kb on + strand, within ECD_03256at 3395.747 kb on + strand, within ECD_03256at 3395.748 kb on - strand, within ECD_03256at 3395.759 kb on + strand, within ECD_03256at 3395.759 kb on + strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.760 kb on - strand, within ECD_03256at 3395.926 kb on - strand, within ECD_03256at 3395.935 kb on + strand, within ECD_03256at 3395.936 kb on - strand, within ECD_03256at 3396.094 kb on + strand, within ECD_03256at 3396.107 kb on + strand, within ECD_03256at 3396.157 kb on + strandat 3396.158 kb on - strandat 3396.277 kb on - strandat 3396.661 kb on - strand, within ECD_03257at 3396.724 kb on + strand, within ECD_03257at 3396.797 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.897 kb on + strandat 3396.952 kb on - strandat 3396.952 kb on - strandat 3396.998 kb on - strandat 3397.005 kb on + strandat 3397.038 kb on - strandat 3397.061 kb on - strandat 3397.080 kb on + strandat 3397.093 kb on - strandat 3397.135 kb on + strandat 3397.147 kb on - strandat 3397.148 kb on + strandat 3397.148 kb on + strandat 3397.245 kb on + strand, within ECD_03258at 3397.245 kb on + strand, within ECD_03258

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,394,034 + ECD_03255 0.52 +0.2
3,394,212 + ECD_03255 0.62 -0.5
3,394,212 + ECD_03255 0.62 -1.0
3,394,212 + ECD_03255 0.62 -1.4
3,394,213 - ECD_03255 0.63 +0.3
3,394,213 - ECD_03255 0.63 +0.3
3,394,213 - ECD_03255 0.63 -2.1
3,394,232 + ECD_03255 0.64 -0.4
3,394,263 - ECD_03255 0.66 -1.7
3,394,269 - ECD_03255 0.66 +0.2
3,394,481 + ECD_03255 0.79 -0.8
3,394,482 - ECD_03255 0.79 -2.2
3,394,482 - ECD_03255 0.79 -0.3
3,394,506 + ECD_03255 0.81 -0.3
3,394,506 + ECD_03255 0.81 -1.3
3,394,507 - ECD_03255 0.81 +0.6
3,394,545 - ECD_03255 0.83 +0.3
3,394,545 - ECD_03255 0.83 +0.4
3,394,554 - ECD_03255 0.84 -1.7
3,394,663 + -0.2
3,394,664 - +0.7
3,394,696 - +0.5
3,394,767 + +0.7
3,394,839 + +0.2
3,394,839 + +0.9
3,394,839 + -0.2
3,394,839 + +0.1
3,394,839 + +0.8
3,394,840 - -0.5
3,394,840 - -0.3
3,394,843 + +0.8
3,394,844 - -0.1
3,394,844 - +0.6
3,394,844 - -0.7
3,394,851 - +1.2
3,394,855 + -2.1
3,394,856 - -0.5
3,394,857 + +0.2
3,394,857 + -0.9
3,394,858 - +0.2
3,394,858 - -0.4
3,395,051 + ECD_03256 0.11 +0.8
3,395,099 + ECD_03256 0.15 -1.2
3,395,099 + ECD_03256 0.15 -0.6
3,395,099 + ECD_03256 0.15 -0.6
3,395,099 + ECD_03256 0.15 -1.3
3,395,099 + ECD_03256 0.15 +0.5
3,395,099 + ECD_03256 0.15 -1.2
3,395,099 + ECD_03256 0.15 -0.4
3,395,100 - ECD_03256 0.15 -1.8
3,395,100 - ECD_03256 0.15 +0.4
3,395,100 - ECD_03256 0.15 -0.2
3,395,100 - ECD_03256 0.15 -0.7
3,395,389 + ECD_03256 0.36 +0.2
3,395,429 + ECD_03256 0.39 +0.5
3,395,430 - ECD_03256 0.39 -1.5
3,395,510 + ECD_03256 0.45 +0.6
3,395,511 - ECD_03256 0.45 +0.4
3,395,567 + ECD_03256 0.50 +1.2
3,395,627 - ECD_03256 0.54 -1.2
3,395,648 + ECD_03256 0.56 -0.9
3,395,649 - ECD_03256 0.56 +0.4
3,395,714 + ECD_03256 0.60 -1.1
3,395,747 + ECD_03256 0.63 -1.0
3,395,748 - ECD_03256 0.63 -0.4
3,395,759 + ECD_03256 0.64 -0.5
3,395,759 + ECD_03256 0.64 -0.2
3,395,760 - ECD_03256 0.64 -0.0
3,395,760 - ECD_03256 0.64 -0.3
3,395,760 - ECD_03256 0.64 +0.3
3,395,926 - ECD_03256 0.76 -1.1
3,395,935 + ECD_03256 0.77 +0.1
3,395,936 - ECD_03256 0.77 +0.7
3,396,094 + ECD_03256 0.89 +0.1
3,396,107 + ECD_03256 0.90 -1.1
3,396,157 + +1.1
3,396,158 - -0.6
3,396,277 - -0.5
3,396,661 - ECD_03257 0.58 -0.1
3,396,724 + ECD_03257 0.67 -2.2
3,396,797 + ECD_03257 0.77 -0.5
3,396,811 + ECD_03257 0.79 -1.2
3,396,811 + ECD_03257 0.79 +0.2
3,396,812 - ECD_03257 0.79 +0.3
3,396,812 - ECD_03257 0.79 +0.6
3,396,897 + -2.0
3,396,952 - -0.7
3,396,952 - +0.2
3,396,998 - -1.2
3,397,005 + -1.8
3,397,038 - +0.3
3,397,061 - +0.6
3,397,080 + +0.4
3,397,093 - -0.3
3,397,135 + +0.2
3,397,147 - -0.4
3,397,148 + +0.3
3,397,148 + +0.5
3,397,245 + ECD_03258 0.11 +0.1
3,397,245 + ECD_03258 0.11 +0.3

Or see this region's nucleotide sequence