Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03067 and ECD_03068 are separated by 22 nucleotides ECD_03068 and ECD_03069 are separated by 117 nucleotides ECD_03069 and ECD_03070 are separated by 45 nucleotides ECD_03070 and ECD_03071 overlap by 4 nucleotides ECD_03071 and ECD_03072 are separated by 213 nucleotides
ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650
_03067
ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960
_03068
ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569
_03069
ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469
_03070
ECD_03071: ECD_03071 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr), at 3,216,466 to 3,216,738
_03071
ECD_03072: ECD_03072 - Mg(2+)-starvation-stimulated protein, at 3,216,952 to 3,217,584
_03072
Position (kb)
3215
3216
3217 Strain fitness (log2 ratio)
-2
-1
0
1 at 3214.635 kb on + strand at 3214.672 kb on + strand at 3214.784 kb on + strand, within ECD_03068 at 3214.784 kb on + strand, within ECD_03068 at 3214.839 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.883 kb on + strand, within ECD_03068 at 3214.909 kb on + strand, within ECD_03068 at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.936 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.958 kb on + strand at 3214.974 kb on + strand at 3215.019 kb on + strand at 3215.428 kb on + strand, within ECD_03069 at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.567 kb on + strand at 3215.590 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.612 kb on + strand at 3215.613 kb on - strand at 3215.788 kb on + strand, within ECD_03070 at 3215.811 kb on + strand, within ECD_03070 at 3215.881 kb on + strand, within ECD_03070 at 3215.889 kb on + strand, within ECD_03070 at 3215.889 kb on + strand, within ECD_03070 at 3216.149 kb on + strand, within ECD_03070 at 3216.221 kb on - strand, within ECD_03070 at 3216.272 kb on + strand, within ECD_03070 at 3216.288 kb on - strand, within ECD_03070 at 3216.297 kb on + strand, within ECD_03070 at 3216.297 kb on + strand, within ECD_03070 at 3216.297 kb on + strand, within ECD_03070 at 3216.297 kb on + strand, within ECD_03070 at 3216.307 kb on + strand, within ECD_03070 at 3216.307 kb on + strand, within ECD_03070 at 3216.329 kb on - strand, within ECD_03070 at 3216.332 kb on + strand, within ECD_03070 at 3216.332 kb on + strand, within ECD_03070 at 3216.380 kb on + strand, within ECD_03070 at 3216.381 kb on - strand, within ECD_03070 at 3216.405 kb on - strand at 3216.405 kb on - strand at 3216.445 kb on + strand at 3216.445 kb on + strand at 3216.446 kb on - strand at 3216.461 kb on - strand at 3216.542 kb on + strand, within ECD_03071 at 3216.542 kb on + strand, within ECD_03071 at 3216.542 kb on + strand, within ECD_03071 at 3216.572 kb on + strand, within ECD_03071 at 3216.572 kb on + strand, within ECD_03071 at 3216.572 kb on + strand, within ECD_03071 at 3216.573 kb on - strand, within ECD_03071 at 3216.573 kb on - strand, within ECD_03071 at 3216.736 kb on + strand at 3216.756 kb on + strand at 3216.756 kb on + strand at 3216.798 kb on + strand at 3216.963 kb on - strand at 3217.035 kb on + strand, within ECD_03072 at 3217.091 kb on + strand, within ECD_03072 at 3217.092 kb on - strand, within ECD_03072 at 3217.183 kb on + strand, within ECD_03072 at 3217.184 kb on - strand, within ECD_03072 at 3217.184 kb on - strand, within ECD_03072 at 3217.228 kb on - strand, within ECD_03072 at 3217.258 kb on + strand, within ECD_03072 at 3217.309 kb on + strand, within ECD_03072
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,214,635 + -0.2 3,214,672 + -0.8 3,214,784 + ECD_03068 0.39 -0.7 3,214,784 + ECD_03068 0.39 +0.1 3,214,839 + ECD_03068 0.58 -0.6 3,214,883 + ECD_03068 0.73 +0.3 3,214,883 + ECD_03068 0.73 +0.6 3,214,883 + ECD_03068 0.73 +1.3 3,214,883 + ECD_03068 0.73 -0.1 3,214,883 + ECD_03068 0.73 +0.1 3,214,883 + ECD_03068 0.73 +0.1 3,214,883 + ECD_03068 0.73 +1.3 3,214,909 + ECD_03068 0.82 +0.2 3,214,936 + +1.2 3,214,936 + +0.3 3,214,936 + +0.4 3,214,958 + -1.4 3,214,958 + -0.2 3,214,958 + +0.4 3,214,974 + +1.1 3,215,019 + -0.7 3,215,428 + ECD_03069 0.71 -1.3 3,215,567 + +1.3 3,215,567 + +0.5 3,215,567 + -0.3 3,215,567 + -0.5 3,215,590 + -0.7 3,215,612 + -0.2 3,215,612 + -1.4 3,215,612 + +0.4 3,215,612 + +0.7 3,215,612 + -1.4 3,215,613 - -0.0 3,215,788 + ECD_03070 0.20 -0.6 3,215,811 + ECD_03070 0.23 -0.6 3,215,881 + ECD_03070 0.31 -2.0 3,215,889 + ECD_03070 0.32 -0.8 3,215,889 + ECD_03070 0.32 -1.0 3,216,149 + ECD_03070 0.62 -0.6 3,216,221 - ECD_03070 0.71 +1.0 3,216,272 + ECD_03070 0.77 -0.3 3,216,288 - ECD_03070 0.79 +0.1 3,216,297 + ECD_03070 0.80 -0.0 3,216,297 + ECD_03070 0.80 -0.6 3,216,297 + ECD_03070 0.80 +0.8 3,216,297 + ECD_03070 0.80 -1.4 3,216,307 + ECD_03070 0.81 -1.5 3,216,307 + ECD_03070 0.81 -0.4 3,216,329 - ECD_03070 0.84 +1.2 3,216,332 + ECD_03070 0.84 -0.8 3,216,332 + ECD_03070 0.84 +0.0 3,216,380 + ECD_03070 0.89 -0.2 3,216,381 - ECD_03070 0.90 +1.3 3,216,405 - +0.9 3,216,405 - -0.0 3,216,445 + -0.8 3,216,445 + +0.6 3,216,446 - -0.8 3,216,461 - -1.7 3,216,542 + ECD_03071 0.28 -0.2 3,216,542 + ECD_03071 0.28 -0.1 3,216,542 + ECD_03071 0.28 -0.2 3,216,572 + ECD_03071 0.39 -0.0 3,216,572 + ECD_03071 0.39 +0.2 3,216,572 + ECD_03071 0.39 +0.2 3,216,573 - ECD_03071 0.39 +0.5 3,216,573 - ECD_03071 0.39 -0.6 3,216,736 + -0.3 3,216,756 + -0.5 3,216,756 + -1.4 3,216,798 + -0.9 3,216,963 - +0.0 3,217,035 + ECD_03072 0.13 -1.9 3,217,091 + ECD_03072 0.22 +0.5 3,217,092 - ECD_03072 0.22 +0.5 3,217,183 + ECD_03072 0.36 -1.0 3,217,184 - ECD_03072 0.37 +1.1 3,217,184 - ECD_03072 0.37 -0.6 3,217,228 - ECD_03072 0.44 -0.3 3,217,258 + ECD_03072 0.48 -0.4 3,217,309 + ECD_03072 0.56 +0.2
Or see this region's nucleotide sequence