Strain Fitness in Escherichia coli BL21 around ECD_03070

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03067 and ECD_03068 are separated by 22 nucleotidesECD_03068 and ECD_03069 are separated by 117 nucleotidesECD_03069 and ECD_03070 are separated by 45 nucleotidesECD_03070 and ECD_03071 overlap by 4 nucleotidesECD_03071 and ECD_03072 are separated by 213 nucleotides ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650 _03067 ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960 _03068 ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569 _03069 ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469 _03070 ECD_03071: ECD_03071 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr), at 3,216,466 to 3,216,738 _03071 ECD_03072: ECD_03072 - Mg(2+)-starvation-stimulated protein, at 3,216,952 to 3,217,584 _03072 Position (kb) 3215 3216 3217Strain fitness (log2 ratio) -2 -1 0 1at 3214.635 kb on + strandat 3214.672 kb on + strandat 3214.784 kb on + strand, within ECD_03068at 3214.784 kb on + strand, within ECD_03068at 3214.839 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.909 kb on + strand, within ECD_03068at 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.974 kb on + strandat 3215.019 kb on + strandat 3215.428 kb on + strand, within ECD_03069at 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.590 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.613 kb on - strandat 3215.788 kb on + strand, within ECD_03070at 3215.811 kb on + strand, within ECD_03070at 3215.881 kb on + strand, within ECD_03070at 3215.889 kb on + strand, within ECD_03070at 3215.889 kb on + strand, within ECD_03070at 3216.149 kb on + strand, within ECD_03070at 3216.221 kb on - strand, within ECD_03070at 3216.272 kb on + strand, within ECD_03070at 3216.288 kb on - strand, within ECD_03070at 3216.297 kb on + strand, within ECD_03070at 3216.297 kb on + strand, within ECD_03070at 3216.297 kb on + strand, within ECD_03070at 3216.297 kb on + strand, within ECD_03070at 3216.307 kb on + strand, within ECD_03070at 3216.307 kb on + strand, within ECD_03070at 3216.329 kb on - strand, within ECD_03070at 3216.332 kb on + strand, within ECD_03070at 3216.332 kb on + strand, within ECD_03070at 3216.380 kb on + strand, within ECD_03070at 3216.381 kb on - strand, within ECD_03070at 3216.405 kb on - strandat 3216.405 kb on - strandat 3216.445 kb on + strandat 3216.445 kb on + strandat 3216.446 kb on - strandat 3216.461 kb on - strandat 3216.542 kb on + strand, within ECD_03071at 3216.542 kb on + strand, within ECD_03071at 3216.542 kb on + strand, within ECD_03071at 3216.572 kb on + strand, within ECD_03071at 3216.572 kb on + strand, within ECD_03071at 3216.572 kb on + strand, within ECD_03071at 3216.573 kb on - strand, within ECD_03071at 3216.573 kb on - strand, within ECD_03071at 3216.736 kb on + strandat 3216.756 kb on + strandat 3216.756 kb on + strandat 3216.798 kb on + strandat 3216.963 kb on - strandat 3217.035 kb on + strand, within ECD_03072at 3217.091 kb on + strand, within ECD_03072at 3217.092 kb on - strand, within ECD_03072at 3217.183 kb on + strand, within ECD_03072at 3217.184 kb on - strand, within ECD_03072at 3217.184 kb on - strand, within ECD_03072at 3217.228 kb on - strand, within ECD_03072at 3217.258 kb on + strand, within ECD_03072at 3217.309 kb on + strand, within ECD_03072

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,214,635 + -0.2
3,214,672 + -0.8
3,214,784 + ECD_03068 0.39 -0.7
3,214,784 + ECD_03068 0.39 +0.1
3,214,839 + ECD_03068 0.58 -0.6
3,214,883 + ECD_03068 0.73 +0.3
3,214,883 + ECD_03068 0.73 +0.6
3,214,883 + ECD_03068 0.73 +1.3
3,214,883 + ECD_03068 0.73 -0.1
3,214,883 + ECD_03068 0.73 +0.1
3,214,883 + ECD_03068 0.73 +0.1
3,214,883 + ECD_03068 0.73 +1.3
3,214,909 + ECD_03068 0.82 +0.2
3,214,936 + +1.2
3,214,936 + +0.3
3,214,936 + +0.4
3,214,958 + -1.4
3,214,958 + -0.2
3,214,958 + +0.4
3,214,974 + +1.1
3,215,019 + -0.7
3,215,428 + ECD_03069 0.71 -1.3
3,215,567 + +1.3
3,215,567 + +0.5
3,215,567 + -0.3
3,215,567 + -0.5
3,215,590 + -0.7
3,215,612 + -0.2
3,215,612 + -1.4
3,215,612 + +0.4
3,215,612 + +0.7
3,215,612 + -1.4
3,215,613 - -0.0
3,215,788 + ECD_03070 0.20 -0.6
3,215,811 + ECD_03070 0.23 -0.6
3,215,881 + ECD_03070 0.31 -2.0
3,215,889 + ECD_03070 0.32 -0.8
3,215,889 + ECD_03070 0.32 -1.0
3,216,149 + ECD_03070 0.62 -0.6
3,216,221 - ECD_03070 0.71 +1.0
3,216,272 + ECD_03070 0.77 -0.3
3,216,288 - ECD_03070 0.79 +0.1
3,216,297 + ECD_03070 0.80 -0.0
3,216,297 + ECD_03070 0.80 -0.6
3,216,297 + ECD_03070 0.80 +0.8
3,216,297 + ECD_03070 0.80 -1.4
3,216,307 + ECD_03070 0.81 -1.5
3,216,307 + ECD_03070 0.81 -0.4
3,216,329 - ECD_03070 0.84 +1.2
3,216,332 + ECD_03070 0.84 -0.8
3,216,332 + ECD_03070 0.84 +0.0
3,216,380 + ECD_03070 0.89 -0.2
3,216,381 - ECD_03070 0.90 +1.3
3,216,405 - +0.9
3,216,405 - -0.0
3,216,445 + -0.8
3,216,445 + +0.6
3,216,446 - -0.8
3,216,461 - -1.7
3,216,542 + ECD_03071 0.28 -0.2
3,216,542 + ECD_03071 0.28 -0.1
3,216,542 + ECD_03071 0.28 -0.2
3,216,572 + ECD_03071 0.39 -0.0
3,216,572 + ECD_03071 0.39 +0.2
3,216,572 + ECD_03071 0.39 +0.2
3,216,573 - ECD_03071 0.39 +0.5
3,216,573 - ECD_03071 0.39 -0.6
3,216,736 + -0.3
3,216,756 + -0.5
3,216,756 + -1.4
3,216,798 + -0.9
3,216,963 - +0.0
3,217,035 + ECD_03072 0.13 -1.9
3,217,091 + ECD_03072 0.22 +0.5
3,217,092 - ECD_03072 0.22 +0.5
3,217,183 + ECD_03072 0.36 -1.0
3,217,184 - ECD_03072 0.37 +1.1
3,217,184 - ECD_03072 0.37 -0.6
3,217,228 - ECD_03072 0.44 -0.3
3,217,258 + ECD_03072 0.48 -0.4
3,217,309 + ECD_03072 0.56 +0.2

Or see this region's nucleotide sequence