Strain Fitness in Escherichia coli BL21 around ECD_02998

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02997 and ECD_02998 are separated by 22 nucleotidesECD_02998 and ECD_02999 are separated by 10 nucleotidesECD_02999 and ECD_03000 overlap by 11 nucleotides ECD_02997: ECD_02997 - tagatose 6-phosphate aldolase 1, kbaZ subunit, at 3,145,107 to 3,146,387 _02997 ECD_02998: ECD_02998 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,146,410 to 3,146,883 _02998 ECD_02999: ECD_02999 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,146,894 to 3,147,673 _02999 ECD_03000: ECD_03000 - PTS system, N-acetylgalactosamine-specific IID component, at 3,147,663 to 3,148,541 _03000 Position (kb) 3146 3147Strain fitness (log2 ratio) -2 -1 0 1 2at 3145.614 kb on + strand, within ECD_02997at 3145.847 kb on - strand, within ECD_02997at 3146.095 kb on - strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.150 kb on + strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.151 kb on - strand, within ECD_02997at 3146.172 kb on + strand, within ECD_02997at 3146.218 kb on + strand, within ECD_02997at 3146.222 kb on + strand, within ECD_02997at 3146.222 kb on + strand, within ECD_02997at 3146.280 kb on + strandat 3146.281 kb on - strandat 3146.418 kb on + strandat 3146.419 kb on - strandat 3146.582 kb on + strand, within ECD_02998at 3146.583 kb on - strand, within ECD_02998at 3146.728 kb on - strand, within ECD_02998at 3146.734 kb on + strand, within ECD_02998at 3146.876 kb on + strandat 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.977 kb on + strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3146.978 kb on - strand, within ECD_02999at 3147.127 kb on + strand, within ECD_02999at 3147.211 kb on - strand, within ECD_02999at 3147.223 kb on + strand, within ECD_02999at 3147.223 kb on + strand, within ECD_02999at 3147.224 kb on - strand, within ECD_02999at 3147.224 kb on - strand, within ECD_02999at 3147.315 kb on - strand, within ECD_02999at 3147.368 kb on - strand, within ECD_02999at 3147.371 kb on + strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.372 kb on - strand, within ECD_02999at 3147.516 kb on - strand, within ECD_02999at 3147.613 kb on + strandat 3147.783 kb on - strand, within ECD_03000at 3147.814 kb on + strand, within ECD_03000at 3147.827 kb on + strand, within ECD_03000at 3147.839 kb on + strand, within ECD_03000at 3147.839 kb on + strand, within ECD_03000at 3147.839 kb on + strand, within ECD_03000at 3147.840 kb on - strand, within ECD_03000

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,145,614 + ECD_02997 0.40 +0.5
3,145,847 - ECD_02997 0.58 -0.2
3,146,095 - ECD_02997 0.77 +1.1
3,146,150 + ECD_02997 0.81 -1.3
3,146,150 + ECD_02997 0.81 -0.3
3,146,150 + ECD_02997 0.81 -0.0
3,146,150 + ECD_02997 0.81 -1.8
3,146,151 - ECD_02997 0.81 +0.4
3,146,151 - ECD_02997 0.81 +0.8
3,146,151 - ECD_02997 0.81 -1.2
3,146,151 - ECD_02997 0.81 -0.2
3,146,151 - ECD_02997 0.81 +0.2
3,146,151 - ECD_02997 0.81 -1.5
3,146,151 - ECD_02997 0.81 -0.5
3,146,151 - ECD_02997 0.81 -0.3
3,146,151 - ECD_02997 0.81 +0.3
3,146,172 + ECD_02997 0.83 +0.8
3,146,218 + ECD_02997 0.87 +1.1
3,146,222 + ECD_02997 0.87 +0.4
3,146,222 + ECD_02997 0.87 -0.1
3,146,280 + -0.2
3,146,281 - +0.1
3,146,418 + -0.1
3,146,419 - +0.3
3,146,582 + ECD_02998 0.36 -1.9
3,146,583 - ECD_02998 0.36 +0.1
3,146,728 - ECD_02998 0.67 -0.2
3,146,734 + ECD_02998 0.68 -2.2
3,146,876 + +0.3
3,146,977 + ECD_02999 0.11 -0.1
3,146,977 + ECD_02999 0.11 +0.5
3,146,977 + ECD_02999 0.11 -0.8
3,146,977 + ECD_02999 0.11 -0.1
3,146,978 - ECD_02999 0.11 -0.6
3,146,978 - ECD_02999 0.11 +1.2
3,146,978 - ECD_02999 0.11 +1.0
3,146,978 - ECD_02999 0.11 +1.9
3,146,978 - ECD_02999 0.11 -0.2
3,147,127 + ECD_02999 0.30 -0.8
3,147,211 - ECD_02999 0.41 -0.2
3,147,223 + ECD_02999 0.42 +0.2
3,147,223 + ECD_02999 0.42 -0.2
3,147,224 - ECD_02999 0.42 +0.5
3,147,224 - ECD_02999 0.42 +0.7
3,147,315 - ECD_02999 0.54 -1.0
3,147,368 - ECD_02999 0.61 -0.5
3,147,371 + ECD_02999 0.61 -0.6
3,147,372 - ECD_02999 0.61 +0.4
3,147,372 - ECD_02999 0.61 -0.2
3,147,372 - ECD_02999 0.61 +0.4
3,147,372 - ECD_02999 0.61 +0.1
3,147,372 - ECD_02999 0.61 +1.3
3,147,516 - ECD_02999 0.80 +0.2
3,147,613 + -1.0
3,147,783 - ECD_03000 0.14 -0.5
3,147,814 + ECD_03000 0.17 -0.5
3,147,827 + ECD_03000 0.19 -1.0
3,147,839 + ECD_03000 0.20 +0.1
3,147,839 + ECD_03000 0.20 +0.8
3,147,839 + ECD_03000 0.20 -0.3
3,147,840 - ECD_03000 0.20 +0.2

Or see this region's nucleotide sequence