Strain Fitness in Escherichia coli BL21 around ECD_02793

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02791 and ECD_02792 are separated by 27 nucleotidesECD_02792 and ECD_02793 are separated by 64 nucleotidesECD_02793 and ECD_02794 are separated by 201 nucleotides ECD_02791: ECD_02791 - adenine DNA glycosylase, at 2,933,781 to 2,934,833 _02791 ECD_02792: ECD_02792 - oxidative damage protective factor for iron-sulfur proteins, at 2,934,861 to 2,935,136 _02792 ECD_02793: ECD_02793 - membrane-bound lytic murein transglycosylase C, at 2,935,201 to 2,936,280 _02793 ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738 _02794 Position (kb) 2935 2936 2937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2934.225 kb on + strand, within ECD_02791at 2934.225 kb on + strand, within ECD_02791at 2934.225 kb on + strand, within ECD_02791at 2934.226 kb on - strand, within ECD_02791at 2934.226 kb on - strand, within ECD_02791at 2934.266 kb on + strand, within ECD_02791at 2934.272 kb on - strand, within ECD_02791at 2934.272 kb on - strand, within ECD_02791at 2934.320 kb on + strand, within ECD_02791at 2934.356 kb on + strand, within ECD_02791at 2934.404 kb on + strand, within ECD_02791at 2934.404 kb on + strand, within ECD_02791at 2934.405 kb on - strand, within ECD_02791at 2934.422 kb on + strand, within ECD_02791at 2934.422 kb on + strand, within ECD_02791at 2934.423 kb on - strand, within ECD_02791at 2934.423 kb on - strand, within ECD_02791at 2934.491 kb on - strand, within ECD_02791at 2934.493 kb on + strand, within ECD_02791at 2934.511 kb on + strand, within ECD_02791at 2934.511 kb on + strand, within ECD_02791at 2934.511 kb on + strand, within ECD_02791at 2934.512 kb on - strand, within ECD_02791at 2934.555 kb on + strand, within ECD_02791at 2934.555 kb on + strand, within ECD_02791at 2934.555 kb on + strand, within ECD_02791at 2934.555 kb on + strand, within ECD_02791at 2934.656 kb on + strand, within ECD_02791at 2934.657 kb on - strand, within ECD_02791at 2934.657 kb on - strand, within ECD_02791at 2934.676 kb on + strand, within ECD_02791at 2934.676 kb on + strand, within ECD_02791at 2934.677 kb on - strand, within ECD_02791at 2934.680 kb on + strand, within ECD_02791at 2934.681 kb on - strand, within ECD_02791at 2934.681 kb on - strand, within ECD_02791at 2934.681 kb on - strand, within ECD_02791at 2934.690 kb on - strand, within ECD_02791at 2934.690 kb on - strand, within ECD_02791at 2934.747 kb on + strandat 2934.747 kb on + strandat 2934.747 kb on + strandat 2934.749 kb on + strandat 2934.750 kb on - strandat 2934.750 kb on - strandat 2934.754 kb on + strandat 2934.754 kb on + strandat 2934.881 kb on + strandat 2934.951 kb on + strand, within ECD_02792at 2935.104 kb on - strand, within ECD_02792at 2935.114 kb on - strandat 2935.115 kb on + strandat 2935.115 kb on + strandat 2935.116 kb on - strandat 2935.116 kb on - strandat 2935.171 kb on + strandat 2935.272 kb on + strandat 2935.276 kb on + strandat 2935.277 kb on - strandat 2935.277 kb on - strandat 2935.277 kb on - strandat 2935.342 kb on - strand, within ECD_02793at 2935.342 kb on - strand, within ECD_02793at 2935.402 kb on + strand, within ECD_02793at 2935.414 kb on + strand, within ECD_02793at 2935.449 kb on + strand, within ECD_02793at 2935.449 kb on + strand, within ECD_02793at 2935.455 kb on + strand, within ECD_02793at 2935.455 kb on + strand, within ECD_02793at 2935.456 kb on - strand, within ECD_02793at 2935.456 kb on - strand, within ECD_02793at 2935.509 kb on + strand, within ECD_02793at 2935.556 kb on - strand, within ECD_02793at 2935.573 kb on - strand, within ECD_02793at 2935.601 kb on - strand, within ECD_02793at 2935.669 kb on + strand, within ECD_02793at 2935.670 kb on - strand, within ECD_02793at 2935.713 kb on + strand, within ECD_02793at 2935.713 kb on + strand, within ECD_02793at 2935.714 kb on - strand, within ECD_02793at 2935.720 kb on + strand, within ECD_02793at 2935.720 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.775 kb on - strand, within ECD_02793at 2935.807 kb on + strand, within ECD_02793at 2935.839 kb on + strand, within ECD_02793at 2935.839 kb on + strand, within ECD_02793at 2935.840 kb on - strand, within ECD_02793at 2935.898 kb on + strand, within ECD_02793at 2935.910 kb on + strand, within ECD_02793at 2935.911 kb on - strand, within ECD_02793at 2935.911 kb on - strand, within ECD_02793at 2935.917 kb on + strand, within ECD_02793at 2935.917 kb on + strand, within ECD_02793at 2935.918 kb on - strand, within ECD_02793at 2935.998 kb on + strand, within ECD_02793at 2936.041 kb on + strand, within ECD_02793at 2936.041 kb on + strand, within ECD_02793at 2936.042 kb on - strand, within ECD_02793at 2936.096 kb on - strand, within ECD_02793at 2936.140 kb on - strand, within ECD_02793at 2936.160 kb on + strand, within ECD_02793at 2936.160 kb on + strand, within ECD_02793at 2936.188 kb on + strandat 2936.240 kb on - strandat 2936.240 kb on - strandat 2936.367 kb on + strandat 2936.491 kb on - strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.565 kb on + strandat 2936.565 kb on + strandat 2936.566 kb on - strandat 2936.566 kb on - strandat 2936.575 kb on - strandat 2936.599 kb on - strandat 2936.599 kb on - strandat 2936.599 kb on - strandat 2936.613 kb on + strand, within ECD_02794at 2936.613 kb on + strand, within ECD_02794at 2936.640 kb on + strand, within ECD_02794at 2936.678 kb on + strand, within ECD_02794at 2936.678 kb on + strand, within ECD_02794at 2936.693 kb on + strand, within ECD_02794at 2936.694 kb on - strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.778 kb on - strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.816 kb on + strand, within ECD_02794at 2936.833 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.969 kb on - strand, within ECD_02794at 2936.970 kb on + strand, within ECD_02794at 2936.971 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.178 kb on - strand, within ECD_02794

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,934,225 + ECD_02791 0.42 +0.5
2,934,225 + ECD_02791 0.42 -0.5
2,934,225 + ECD_02791 0.42 -0.2
2,934,226 - ECD_02791 0.42 +0.8
2,934,226 - ECD_02791 0.42 +0.5
2,934,266 + ECD_02791 0.46 +1.4
2,934,272 - ECD_02791 0.47 +0.7
2,934,272 - ECD_02791 0.47 +1.1
2,934,320 + ECD_02791 0.51 +0.0
2,934,356 + ECD_02791 0.55 -0.4
2,934,404 + ECD_02791 0.59 -0.6
2,934,404 + ECD_02791 0.59 +0.5
2,934,405 - ECD_02791 0.59 -0.7
2,934,422 + ECD_02791 0.61 +0.7
2,934,422 + ECD_02791 0.61 +0.1
2,934,423 - ECD_02791 0.61 +0.1
2,934,423 - ECD_02791 0.61 -0.7
2,934,491 - ECD_02791 0.67 +0.9
2,934,493 + ECD_02791 0.68 -0.1
2,934,511 + ECD_02791 0.69 -0.4
2,934,511 + ECD_02791 0.69 +0.6
2,934,511 + ECD_02791 0.69 +0.0
2,934,512 - ECD_02791 0.69 -0.2
2,934,555 + ECD_02791 0.74 -1.2
2,934,555 + ECD_02791 0.74 -0.4
2,934,555 + ECD_02791 0.74 -0.4
2,934,555 + ECD_02791 0.74 +0.5
2,934,656 + ECD_02791 0.83 -0.1
2,934,657 - ECD_02791 0.83 +0.7
2,934,657 - ECD_02791 0.83 -0.3
2,934,676 + ECD_02791 0.85 -0.7
2,934,676 + ECD_02791 0.85 +0.5
2,934,677 - ECD_02791 0.85 +0.2
2,934,680 + ECD_02791 0.85 -0.5
2,934,681 - ECD_02791 0.85 +0.2
2,934,681 - ECD_02791 0.85 +2.1
2,934,681 - ECD_02791 0.85 -1.7
2,934,690 - ECD_02791 0.86 -0.5
2,934,690 - ECD_02791 0.86 -1.8
2,934,747 + +0.5
2,934,747 + +0.2
2,934,747 + -0.3
2,934,749 + -0.6
2,934,750 - +0.1
2,934,750 - +0.0
2,934,754 + +0.9
2,934,754 + -1.5
2,934,881 + -0.2
2,934,951 + ECD_02792 0.33 +0.1
2,935,104 - ECD_02792 0.88 -1.4
2,935,114 - -0.8
2,935,115 + +0.0
2,935,115 + -0.2
2,935,116 - -0.6
2,935,116 - -0.3
2,935,171 + +0.9
2,935,272 + +0.2
2,935,276 + +0.1
2,935,277 - +0.4
2,935,277 - -0.0
2,935,277 - -0.4
2,935,342 - ECD_02793 0.13 -0.7
2,935,342 - ECD_02793 0.13 -0.1
2,935,402 + ECD_02793 0.19 +0.6
2,935,414 + ECD_02793 0.20 -0.5
2,935,449 + ECD_02793 0.23 +0.2
2,935,449 + ECD_02793 0.23 +0.8
2,935,455 + ECD_02793 0.24 +0.1
2,935,455 + ECD_02793 0.24 -0.8
2,935,456 - ECD_02793 0.24 -0.0
2,935,456 - ECD_02793 0.24 -1.3
2,935,509 + ECD_02793 0.29 -0.7
2,935,556 - ECD_02793 0.33 -0.4
2,935,573 - ECD_02793 0.34 -0.0
2,935,601 - ECD_02793 0.37 -0.7
2,935,669 + ECD_02793 0.43 +0.6
2,935,670 - ECD_02793 0.43 -0.4
2,935,713 + ECD_02793 0.47 -0.4
2,935,713 + ECD_02793 0.47 -0.3
2,935,714 - ECD_02793 0.47 -1.4
2,935,720 + ECD_02793 0.48 -0.6
2,935,720 + ECD_02793 0.48 -0.5
2,935,774 + ECD_02793 0.53 -0.6
2,935,774 + ECD_02793 0.53 +0.5
2,935,774 + ECD_02793 0.53 -0.5
2,935,775 - ECD_02793 0.53 +0.6
2,935,807 + ECD_02793 0.56 +0.8
2,935,839 + ECD_02793 0.59 -0.2
2,935,839 + ECD_02793 0.59 +0.2
2,935,840 - ECD_02793 0.59 -1.1
2,935,898 + ECD_02793 0.65 -0.0
2,935,910 + ECD_02793 0.66 -0.7
2,935,911 - ECD_02793 0.66 -1.7
2,935,911 - ECD_02793 0.66 -1.6
2,935,917 + ECD_02793 0.66 -0.2
2,935,917 + ECD_02793 0.66 -2.7
2,935,918 - ECD_02793 0.66 -0.3
2,935,998 + ECD_02793 0.74 +1.4
2,936,041 + ECD_02793 0.78 -1.0
2,936,041 + ECD_02793 0.78 +0.4
2,936,042 - ECD_02793 0.78 -0.2
2,936,096 - ECD_02793 0.83 -1.3
2,936,140 - ECD_02793 0.87 -1.4
2,936,160 + ECD_02793 0.89 +0.0
2,936,160 + ECD_02793 0.89 +0.3
2,936,188 + +0.5
2,936,240 - +1.1
2,936,240 - -0.9
2,936,367 + -0.2
2,936,491 - -2.9
2,936,563 + -0.4
2,936,563 + -0.4
2,936,563 + -0.5
2,936,563 + -0.2
2,936,563 + +0.2
2,936,564 - -0.8
2,936,564 - +0.7
2,936,564 - +1.0
2,936,564 - +0.4
2,936,564 - +0.3
2,936,564 - -0.1
2,936,565 + -1.3
2,936,565 + -1.1
2,936,566 - -2.4
2,936,566 - -0.7
2,936,575 - +0.5
2,936,599 - -0.1
2,936,599 - -1.0
2,936,599 - -0.6
2,936,613 + ECD_02794 0.10 +0.3
2,936,613 + ECD_02794 0.10 +0.0
2,936,640 + ECD_02794 0.13 +0.1
2,936,678 + ECD_02794 0.16 -0.3
2,936,678 + ECD_02794 0.16 -1.1
2,936,693 + ECD_02794 0.17 -0.6
2,936,694 - ECD_02794 0.17 +1.3
2,936,695 + ECD_02794 0.17 -0.1
2,936,695 + ECD_02794 0.17 +0.2
2,936,695 + ECD_02794 0.17 -0.4
2,936,778 - ECD_02794 0.24 -0.8
2,936,797 + ECD_02794 0.25 +0.5
2,936,797 + ECD_02794 0.25 -2.6
2,936,797 + ECD_02794 0.25 -0.5
2,936,797 + ECD_02794 0.25 +0.4
2,936,797 + ECD_02794 0.25 -0.5
2,936,797 + ECD_02794 0.25 +0.1
2,936,798 - ECD_02794 0.25 +1.1
2,936,798 - ECD_02794 0.25 -0.8
2,936,798 - ECD_02794 0.25 -0.2
2,936,798 - ECD_02794 0.25 +0.0
2,936,799 + ECD_02794 0.25 +1.1
2,936,799 + ECD_02794 0.25 +0.1
2,936,799 + ECD_02794 0.25 -0.6
2,936,799 + ECD_02794 0.25 +0.8
2,936,800 - ECD_02794 0.25 +0.8
2,936,800 - ECD_02794 0.25 -0.2
2,936,800 - ECD_02794 0.25 +0.4
2,936,800 - ECD_02794 0.25 +0.5
2,936,816 + ECD_02794 0.27 -0.4
2,936,833 + ECD_02794 0.28 -1.0
2,936,968 + ECD_02794 0.39 -0.9
2,936,968 + ECD_02794 0.39 -0.8
2,936,969 - ECD_02794 0.39 +1.3
2,936,970 + ECD_02794 0.39 -0.1
2,936,971 - ECD_02794 0.39 +0.7
2,937,109 - ECD_02794 0.50 -1.5
2,937,109 - ECD_02794 0.50 +0.7
2,937,178 - ECD_02794 0.55 -0.5

Or see this region's nucleotide sequence