Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02724 and ECD_02725 are separated by 5 nucleotides ECD_02725 and ECD_02726 are separated by 24 nucleotides ECD_02726 and ECD_02727 are separated by 111 nucleotides ECD_02727 and ECD_02728 are separated by 39 nucleotides
ECD_02724: ECD_02724 - ssDNA exonuclease, 5, at 2,867,233 to 2,868,966
_02724
ECD_02725: ECD_02725 - protein disulfide isomerase II, at 2,868,972 to 2,869,682
_02725
ECD_02726: ECD_02726 - site-specific tyrosine recombinase, at 2,869,707 to 2,870,603
_02726
ECD_02727: ECD_02727 - flavodoxin 2, at 2,870,715 to 2,871,236
_02727
ECD_02728: ECD_02728 - toxin of CptAB toxin-antitoxin pair, at 2,871,276 to 2,871,683
_02728
Position (kb)
2869
2870
2871 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2868.773 kb on + strand, within ECD_02724 at 2868.773 kb on + strand, within ECD_02724 at 2868.774 kb on - strand, within ECD_02724 at 2868.774 kb on - strand, within ECD_02724 at 2868.774 kb on - strand, within ECD_02724 at 2868.774 kb on - strand, within ECD_02724 at 2868.825 kb on + strand at 2868.825 kb on + strand at 2868.825 kb on + strand at 2868.825 kb on + strand at 2868.825 kb on + strand at 2868.826 kb on - strand at 2868.826 kb on - strand at 2868.826 kb on - strand at 2868.826 kb on - strand at 2868.832 kb on - strand at 2868.879 kb on - strand at 2868.879 kb on - strand at 2868.881 kb on - strand at 2868.881 kb on - strand at 2868.953 kb on - strand at 2868.953 kb on - strand at 2868.953 kb on - strand at 2868.953 kb on - strand at 2868.953 kb on - strand at 2868.953 kb on - strand at 2868.973 kb on + strand at 2868.974 kb on - strand at 2868.974 kb on - strand at 2868.977 kb on + strand at 2869.108 kb on - strand, within ECD_02725 at 2869.108 kb on - strand, within ECD_02725 at 2869.111 kb on + strand, within ECD_02725 at 2869.111 kb on + strand, within ECD_02725 at 2869.158 kb on - strand, within ECD_02725 at 2869.158 kb on - strand, within ECD_02725 at 2869.208 kb on + strand, within ECD_02725 at 2869.208 kb on + strand, within ECD_02725 at 2869.208 kb on + strand, within ECD_02725 at 2869.209 kb on - strand, within ECD_02725 at 2869.209 kb on - strand, within ECD_02725 at 2869.290 kb on - strand, within ECD_02725 at 2869.291 kb on + strand, within ECD_02725 at 2869.291 kb on + strand, within ECD_02725 at 2869.292 kb on - strand, within ECD_02725 at 2869.292 kb on - strand, within ECD_02725 at 2869.292 kb on - strand, within ECD_02725 at 2869.292 kb on - strand, within ECD_02725 at 2869.334 kb on + strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.335 kb on - strand, within ECD_02725 at 2869.338 kb on - strand, within ECD_02725 at 2869.344 kb on - strand, within ECD_02725 at 2869.379 kb on + strand, within ECD_02725 at 2869.420 kb on - strand, within ECD_02725 at 2869.420 kb on - strand, within ECD_02725 at 2869.461 kb on - strand, within ECD_02725 at 2869.468 kb on + strand, within ECD_02725 at 2869.468 kb on + strand, within ECD_02725 at 2869.468 kb on + strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.469 kb on - strand, within ECD_02725 at 2869.487 kb on + strand, within ECD_02725 at 2869.487 kb on + strand, within ECD_02725 at 2869.487 kb on + strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.488 kb on - strand, within ECD_02725 at 2869.493 kb on + strand, within ECD_02725 at 2869.493 kb on + strand, within ECD_02725 at 2869.510 kb on + strand, within ECD_02725 at 2869.510 kb on + strand, within ECD_02725 at 2869.510 kb on + strand, within ECD_02725 at 2869.511 kb on - strand, within ECD_02725 at 2869.511 kb on - strand, within ECD_02725 at 2869.511 kb on - strand, within ECD_02725 at 2869.511 kb on - strand, within ECD_02725 at 2869.552 kb on - strand, within ECD_02725 at 2869.667 kb on + strand at 2869.667 kb on + strand at 2869.668 kb on - strand at 2869.682 kb on + strand at 2869.766 kb on + strand at 2869.767 kb on - strand at 2869.767 kb on - strand at 2869.822 kb on - strand, within ECD_02726 at 2869.839 kb on + strand, within ECD_02726 at 2869.842 kb on + strand, within ECD_02726 at 2869.916 kb on - strand, within ECD_02726 at 2870.091 kb on - strand, within ECD_02726 at 2870.176 kb on + strand, within ECD_02726 at 2870.176 kb on + strand, within ECD_02726 at 2870.177 kb on - strand, within ECD_02726 at 2870.177 kb on - strand, within ECD_02726 at 2870.177 kb on - strand, within ECD_02726 at 2870.177 kb on - strand, within ECD_02726 at 2870.206 kb on - strand, within ECD_02726 at 2870.226 kb on + strand, within ECD_02726 at 2870.239 kb on - strand, within ECD_02726 at 2870.242 kb on - strand, within ECD_02726 at 2870.242 kb on - strand, within ECD_02726 at 2870.266 kb on - strand, within ECD_02726 at 2870.403 kb on - strand, within ECD_02726 at 2870.403 kb on - strand, within ECD_02726 at 2870.532 kb on - strand at 2870.615 kb on - strand at 2870.615 kb on - strand at 2870.615 kb on - strand at 2870.636 kb on + strand at 2870.643 kb on + strand at 2870.644 kb on - strand at 2870.644 kb on - strand at 2870.671 kb on + strand at 2870.671 kb on + strand at 2870.671 kb on + strand at 2870.676 kb on + strand at 2870.676 kb on + strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.677 kb on - strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.709 kb on + strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.710 kb on - strand at 2870.714 kb on + strand at 2870.733 kb on + strand at 2870.751 kb on + strand at 2870.751 kb on + strand at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.809 kb on + strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.810 kb on - strand, within ECD_02727 at 2870.839 kb on + strand, within ECD_02727 at 2870.850 kb on + strand, within ECD_02727 at 2870.851 kb on - strand, within ECD_02727 at 2870.967 kb on + strand, within ECD_02727 at 2870.968 kb on - strand, within ECD_02727 at 2871.092 kb on + strand, within ECD_02727 at 2871.155 kb on + strand, within ECD_02727 at 2871.155 kb on + strand, within ECD_02727 at 2871.162 kb on + strand, within ECD_02727 at 2871.162 kb on + strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.183 kb on - strand, within ECD_02727 at 2871.228 kb on + strand at 2871.228 kb on + strand at 2871.228 kb on + strand at 2871.229 kb on - strand at 2871.229 kb on - strand at 2871.229 kb on - strand at 2871.251 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.258 kb on + strand at 2871.259 kb on - strand at 2871.259 kb on - strand at 2871.259 kb on - strand at 2871.312 kb on + strand at 2871.357 kb on + strand, within ECD_02728 at 2871.388 kb on - strand, within ECD_02728 at 2871.388 kb on - strand, within ECD_02728 at 2871.410 kb on + strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.411 kb on - strand, within ECD_02728 at 2871.483 kb on - strand, within ECD_02728 at 2871.503 kb on + strand, within ECD_02728 at 2871.503 kb on + strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.504 kb on - strand, within ECD_02728 at 2871.506 kb on + strand, within ECD_02728 at 2871.507 kb on - strand, within ECD_02728 at 2871.549 kb on + strand, within ECD_02728 at 2871.549 kb on + strand, within ECD_02728 at 2871.550 kb on - strand, within ECD_02728 at 2871.571 kb on + strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.572 kb on - strand, within ECD_02728 at 2871.599 kb on + strand, within ECD_02728
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,868,773 + ECD_02724 0.89 -1.8 2,868,773 + ECD_02724 0.89 -0.6 2,868,774 - ECD_02724 0.89 -0.5 2,868,774 - ECD_02724 0.89 -0.3 2,868,774 - ECD_02724 0.89 -0.8 2,868,774 - ECD_02724 0.89 -0.3 2,868,825 + -1.2 2,868,825 + -1.4 2,868,825 + -0.5 2,868,825 + +1.6 2,868,825 + -0.9 2,868,826 - -1.3 2,868,826 - -0.5 2,868,826 - -1.5 2,868,826 - -2.4 2,868,832 - -1.1 2,868,879 - -2.6 2,868,879 - +0.8 2,868,881 - -1.6 2,868,881 - +0.6 2,868,953 - -0.2 2,868,953 - -0.4 2,868,953 - -0.0 2,868,953 - -0.7 2,868,953 - -1.5 2,868,953 - +0.6 2,868,973 + -1.1 2,868,974 - +0.5 2,868,974 - -0.9 2,868,977 + +0.1 2,869,108 - ECD_02725 0.19 +0.5 2,869,108 - ECD_02725 0.19 +0.6 2,869,111 + ECD_02725 0.20 +0.6 2,869,111 + ECD_02725 0.20 +0.2 2,869,158 - ECD_02725 0.26 -1.1 2,869,158 - ECD_02725 0.26 +0.4 2,869,208 + ECD_02725 0.33 -1.1 2,869,208 + ECD_02725 0.33 -0.2 2,869,208 + ECD_02725 0.33 -0.1 2,869,209 - ECD_02725 0.33 +0.4 2,869,209 - ECD_02725 0.33 +0.5 2,869,290 - ECD_02725 0.45 -0.1 2,869,291 + ECD_02725 0.45 -0.0 2,869,291 + ECD_02725 0.45 +0.8 2,869,292 - ECD_02725 0.45 -0.2 2,869,292 - ECD_02725 0.45 +0.3 2,869,292 - ECD_02725 0.45 -1.8 2,869,292 - ECD_02725 0.45 -0.4 2,869,334 + ECD_02725 0.51 -0.5 2,869,335 - ECD_02725 0.51 +0.8 2,869,335 - ECD_02725 0.51 -0.5 2,869,335 - ECD_02725 0.51 +0.1 2,869,335 - ECD_02725 0.51 -0.6 2,869,335 - ECD_02725 0.51 -1.0 2,869,335 - ECD_02725 0.51 +0.4 2,869,338 - ECD_02725 0.51 +0.5 2,869,344 - ECD_02725 0.52 +0.6 2,869,379 + ECD_02725 0.57 -0.5 2,869,420 - ECD_02725 0.63 +0.6 2,869,420 - ECD_02725 0.63 -1.1 2,869,461 - ECD_02725 0.69 -0.7 2,869,468 + ECD_02725 0.70 +0.2 2,869,468 + ECD_02725 0.70 +0.1 2,869,468 + ECD_02725 0.70 -0.3 2,869,469 - ECD_02725 0.70 +0.2 2,869,469 - ECD_02725 0.70 -0.1 2,869,469 - ECD_02725 0.70 -0.0 2,869,469 - ECD_02725 0.70 -0.5 2,869,469 - ECD_02725 0.70 +0.1 2,869,469 - ECD_02725 0.70 -0.7 2,869,469 - ECD_02725 0.70 +0.2 2,869,487 + ECD_02725 0.72 +2.6 2,869,487 + ECD_02725 0.72 -0.1 2,869,487 + ECD_02725 0.72 +1.1 2,869,488 - ECD_02725 0.73 +0.1 2,869,488 - ECD_02725 0.73 -1.6 2,869,488 - ECD_02725 0.73 -0.2 2,869,488 - ECD_02725 0.73 +0.5 2,869,488 - ECD_02725 0.73 -2.1 2,869,488 - ECD_02725 0.73 +0.1 2,869,488 - ECD_02725 0.73 +0.8 2,869,488 - ECD_02725 0.73 +0.4 2,869,493 + ECD_02725 0.73 -1.2 2,869,493 + ECD_02725 0.73 -1.3 2,869,510 + ECD_02725 0.76 -1.5 2,869,510 + ECD_02725 0.76 +0.8 2,869,510 + ECD_02725 0.76 -0.2 2,869,511 - ECD_02725 0.76 +0.5 2,869,511 - ECD_02725 0.76 -0.3 2,869,511 - ECD_02725 0.76 +0.8 2,869,511 - ECD_02725 0.76 +0.5 2,869,552 - ECD_02725 0.82 +1.1 2,869,667 + -0.1 2,869,667 + +0.2 2,869,668 - +0.8 2,869,682 + +0.2 2,869,766 + -1.4 2,869,767 - +0.6 2,869,767 - -1.2 2,869,822 - ECD_02726 0.13 -1.1 2,869,839 + ECD_02726 0.15 -0.4 2,869,842 + ECD_02726 0.15 -0.4 2,869,916 - ECD_02726 0.23 +0.6 2,870,091 - ECD_02726 0.43 +1.6 2,870,176 + ECD_02726 0.52 +0.3 2,870,176 + ECD_02726 0.52 +0.1 2,870,177 - ECD_02726 0.52 -1.1 2,870,177 - ECD_02726 0.52 -0.8 2,870,177 - ECD_02726 0.52 +1.3 2,870,177 - ECD_02726 0.52 -0.9 2,870,206 - ECD_02726 0.56 +0.3 2,870,226 + ECD_02726 0.58 +0.8 2,870,239 - ECD_02726 0.59 +0.6 2,870,242 - ECD_02726 0.60 +1.6 2,870,242 - ECD_02726 0.60 -0.2 2,870,266 - ECD_02726 0.62 -0.2 2,870,403 - ECD_02726 0.78 -0.7 2,870,403 - ECD_02726 0.78 +1.6 2,870,532 - +0.2 2,870,615 - -0.0 2,870,615 - +1.2 2,870,615 - +0.7 2,870,636 + -0.0 2,870,643 + +0.1 2,870,644 - -1.5 2,870,644 - +0.2 2,870,671 + +1.1 2,870,671 + -2.2 2,870,671 + +0.4 2,870,676 + +0.5 2,870,676 + -1.6 2,870,677 - +1.1 2,870,677 - +0.4 2,870,677 - -0.2 2,870,677 - -0.1 2,870,709 + -1.4 2,870,709 + -1.4 2,870,709 + +0.4 2,870,709 + +0.5 2,870,709 + -0.5 2,870,710 - +0.1 2,870,710 - +0.2 2,870,710 - -1.5 2,870,710 - +0.1 2,870,710 - +0.7 2,870,710 - +0.6 2,870,710 - -0.8 2,870,710 - -0.1 2,870,710 - +0.6 2,870,710 - -0.3 2,870,710 - -0.6 2,870,714 + -1.1 2,870,733 + -1.7 2,870,751 + -1.2 2,870,751 + -0.8 2,870,809 + ECD_02727 0.18 +0.1 2,870,809 + ECD_02727 0.18 -0.4 2,870,809 + ECD_02727 0.18 -1.5 2,870,809 + ECD_02727 0.18 +0.2 2,870,809 + ECD_02727 0.18 +0.1 2,870,809 + ECD_02727 0.18 -0.7 2,870,809 + ECD_02727 0.18 +2.0 2,870,809 + ECD_02727 0.18 +0.4 2,870,809 + ECD_02727 0.18 -0.3 2,870,809 + ECD_02727 0.18 -0.5 2,870,809 + ECD_02727 0.18 -1.3 2,870,809 + ECD_02727 0.18 -0.3 2,870,809 + ECD_02727 0.18 -2.6 2,870,810 - ECD_02727 0.18 -0.3 2,870,810 - ECD_02727 0.18 +0.7 2,870,810 - ECD_02727 0.18 -0.9 2,870,810 - ECD_02727 0.18 -0.2 2,870,810 - ECD_02727 0.18 +1.3 2,870,839 + ECD_02727 0.24 -0.7 2,870,850 + ECD_02727 0.26 +0.6 2,870,851 - ECD_02727 0.26 -0.1 2,870,967 + ECD_02727 0.48 +1.1 2,870,968 - ECD_02727 0.48 -0.5 2,871,092 + ECD_02727 0.72 +0.4 2,871,155 + ECD_02727 0.84 -1.9 2,871,155 + ECD_02727 0.84 +0.4 2,871,162 + ECD_02727 0.86 -0.2 2,871,162 + ECD_02727 0.86 -0.1 2,871,183 - ECD_02727 0.90 +0.8 2,871,183 - ECD_02727 0.90 -0.6 2,871,183 - ECD_02727 0.90 +0.2 2,871,228 + -1.1 2,871,228 + -0.6 2,871,228 + +0.2 2,871,229 - +0.5 2,871,229 - -1.4 2,871,229 - +0.3 2,871,251 + -0.5 2,871,258 + +0.6 2,871,258 + -0.0 2,871,258 + -0.5 2,871,258 + -0.3 2,871,259 - -0.6 2,871,259 - +0.2 2,871,259 - -0.0 2,871,312 + +0.3 2,871,357 + ECD_02728 0.20 -0.4 2,871,388 - ECD_02728 0.27 -1.4 2,871,388 - ECD_02728 0.27 +0.9 2,871,410 + ECD_02728 0.33 -1.0 2,871,411 - ECD_02728 0.33 +1.1 2,871,411 - ECD_02728 0.33 +0.2 2,871,411 - ECD_02728 0.33 -0.4 2,871,483 - ECD_02728 0.51 +0.0 2,871,503 + ECD_02728 0.56 -0.7 2,871,503 + ECD_02728 0.56 +0.3 2,871,504 - ECD_02728 0.56 -1.2 2,871,504 - ECD_02728 0.56 +0.0 2,871,504 - ECD_02728 0.56 +0.6 2,871,504 - ECD_02728 0.56 -0.4 2,871,506 + ECD_02728 0.56 -1.7 2,871,507 - ECD_02728 0.57 +0.0 2,871,549 + ECD_02728 0.67 -0.3 2,871,549 + ECD_02728 0.67 -1.2 2,871,550 - ECD_02728 0.67 -2.5 2,871,571 + ECD_02728 0.72 -0.3 2,871,572 - ECD_02728 0.73 +1.6 2,871,572 - ECD_02728 0.73 +0.1 2,871,572 - ECD_02728 0.73 +0.8 2,871,572 - ECD_02728 0.73 +0.6 2,871,572 - ECD_02728 0.73 -0.4 2,871,599 + ECD_02728 0.79 -0.9
Or see this region's nucleotide sequence