Strain Fitness in Escherichia coli BL21 around ECD_02726

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02724 and ECD_02725 are separated by 5 nucleotidesECD_02725 and ECD_02726 are separated by 24 nucleotidesECD_02726 and ECD_02727 are separated by 111 nucleotidesECD_02727 and ECD_02728 are separated by 39 nucleotides ECD_02724: ECD_02724 - ssDNA exonuclease, 5, at 2,867,233 to 2,868,966 _02724 ECD_02725: ECD_02725 - protein disulfide isomerase II, at 2,868,972 to 2,869,682 _02725 ECD_02726: ECD_02726 - site-specific tyrosine recombinase, at 2,869,707 to 2,870,603 _02726 ECD_02727: ECD_02727 - flavodoxin 2, at 2,870,715 to 2,871,236 _02727 ECD_02728: ECD_02728 - toxin of CptAB toxin-antitoxin pair, at 2,871,276 to 2,871,683 _02728 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -2 -1 0 1 2at 2868.773 kb on + strand, within ECD_02724at 2868.773 kb on + strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.832 kb on - strandat 2868.879 kb on - strandat 2868.879 kb on - strandat 2868.881 kb on - strandat 2868.881 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.973 kb on + strandat 2868.974 kb on - strandat 2868.974 kb on - strandat 2868.977 kb on + strandat 2869.108 kb on - strand, within ECD_02725at 2869.108 kb on - strand, within ECD_02725at 2869.111 kb on + strand, within ECD_02725at 2869.111 kb on + strand, within ECD_02725at 2869.158 kb on - strand, within ECD_02725at 2869.158 kb on - strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.209 kb on - strand, within ECD_02725at 2869.209 kb on - strand, within ECD_02725at 2869.290 kb on - strand, within ECD_02725at 2869.291 kb on + strand, within ECD_02725at 2869.291 kb on + strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.334 kb on + strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.338 kb on - strand, within ECD_02725at 2869.344 kb on - strand, within ECD_02725at 2869.379 kb on + strand, within ECD_02725at 2869.420 kb on - strand, within ECD_02725at 2869.420 kb on - strand, within ECD_02725at 2869.461 kb on - strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.493 kb on + strand, within ECD_02725at 2869.493 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.552 kb on - strand, within ECD_02725at 2869.667 kb on + strandat 2869.667 kb on + strandat 2869.668 kb on - strandat 2869.682 kb on + strandat 2869.766 kb on + strandat 2869.767 kb on - strandat 2869.767 kb on - strandat 2869.822 kb on - strand, within ECD_02726at 2869.839 kb on + strand, within ECD_02726at 2869.842 kb on + strand, within ECD_02726at 2869.916 kb on - strand, within ECD_02726at 2870.091 kb on - strand, within ECD_02726at 2870.176 kb on + strand, within ECD_02726at 2870.176 kb on + strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.177 kb on - strand, within ECD_02726at 2870.206 kb on - strand, within ECD_02726at 2870.226 kb on + strand, within ECD_02726at 2870.239 kb on - strand, within ECD_02726at 2870.242 kb on - strand, within ECD_02726at 2870.242 kb on - strand, within ECD_02726at 2870.266 kb on - strand, within ECD_02726at 2870.403 kb on - strand, within ECD_02726at 2870.403 kb on - strand, within ECD_02726at 2870.532 kb on - strandat 2870.615 kb on - strandat 2870.615 kb on - strandat 2870.615 kb on - strandat 2870.636 kb on + strandat 2870.643 kb on + strandat 2870.644 kb on - strandat 2870.644 kb on - strandat 2870.671 kb on + strandat 2870.671 kb on + strandat 2870.671 kb on + strandat 2870.676 kb on + strandat 2870.676 kb on + strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.677 kb on - strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.709 kb on + strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.710 kb on - strandat 2870.714 kb on + strandat 2870.733 kb on + strandat 2870.751 kb on + strandat 2870.751 kb on + strandat 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.809 kb on + strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.810 kb on - strand, within ECD_02727at 2870.839 kb on + strand, within ECD_02727at 2870.850 kb on + strand, within ECD_02727at 2870.851 kb on - strand, within ECD_02727at 2870.967 kb on + strand, within ECD_02727at 2870.968 kb on - strand, within ECD_02727at 2871.092 kb on + strand, within ECD_02727at 2871.155 kb on + strand, within ECD_02727at 2871.155 kb on + strand, within ECD_02727at 2871.162 kb on + strand, within ECD_02727at 2871.162 kb on + strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.183 kb on - strand, within ECD_02727at 2871.228 kb on + strandat 2871.228 kb on + strandat 2871.228 kb on + strandat 2871.229 kb on - strandat 2871.229 kb on - strandat 2871.229 kb on - strandat 2871.251 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.258 kb on + strandat 2871.259 kb on - strandat 2871.259 kb on - strandat 2871.259 kb on - strandat 2871.312 kb on + strandat 2871.357 kb on + strand, within ECD_02728at 2871.388 kb on - strand, within ECD_02728at 2871.388 kb on - strand, within ECD_02728at 2871.410 kb on + strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.411 kb on - strand, within ECD_02728at 2871.483 kb on - strand, within ECD_02728at 2871.503 kb on + strand, within ECD_02728at 2871.503 kb on + strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.504 kb on - strand, within ECD_02728at 2871.506 kb on + strand, within ECD_02728at 2871.507 kb on - strand, within ECD_02728at 2871.549 kb on + strand, within ECD_02728at 2871.549 kb on + strand, within ECD_02728at 2871.550 kb on - strand, within ECD_02728at 2871.571 kb on + strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.572 kb on - strand, within ECD_02728at 2871.599 kb on + strand, within ECD_02728

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,868,773 + ECD_02724 0.89 -1.8
2,868,773 + ECD_02724 0.89 -0.6
2,868,774 - ECD_02724 0.89 -0.5
2,868,774 - ECD_02724 0.89 -0.3
2,868,774 - ECD_02724 0.89 -0.8
2,868,774 - ECD_02724 0.89 -0.3
2,868,825 + -1.2
2,868,825 + -1.4
2,868,825 + -0.5
2,868,825 + +1.6
2,868,825 + -0.9
2,868,826 - -1.3
2,868,826 - -0.5
2,868,826 - -1.5
2,868,826 - -2.4
2,868,832 - -1.1
2,868,879 - -2.6
2,868,879 - +0.8
2,868,881 - -1.6
2,868,881 - +0.6
2,868,953 - -0.2
2,868,953 - -0.4
2,868,953 - -0.0
2,868,953 - -0.7
2,868,953 - -1.5
2,868,953 - +0.6
2,868,973 + -1.1
2,868,974 - +0.5
2,868,974 - -0.9
2,868,977 + +0.1
2,869,108 - ECD_02725 0.19 +0.5
2,869,108 - ECD_02725 0.19 +0.6
2,869,111 + ECD_02725 0.20 +0.6
2,869,111 + ECD_02725 0.20 +0.2
2,869,158 - ECD_02725 0.26 -1.1
2,869,158 - ECD_02725 0.26 +0.4
2,869,208 + ECD_02725 0.33 -1.1
2,869,208 + ECD_02725 0.33 -0.2
2,869,208 + ECD_02725 0.33 -0.1
2,869,209 - ECD_02725 0.33 +0.4
2,869,209 - ECD_02725 0.33 +0.5
2,869,290 - ECD_02725 0.45 -0.1
2,869,291 + ECD_02725 0.45 -0.0
2,869,291 + ECD_02725 0.45 +0.8
2,869,292 - ECD_02725 0.45 -0.2
2,869,292 - ECD_02725 0.45 +0.3
2,869,292 - ECD_02725 0.45 -1.8
2,869,292 - ECD_02725 0.45 -0.4
2,869,334 + ECD_02725 0.51 -0.5
2,869,335 - ECD_02725 0.51 +0.8
2,869,335 - ECD_02725 0.51 -0.5
2,869,335 - ECD_02725 0.51 +0.1
2,869,335 - ECD_02725 0.51 -0.6
2,869,335 - ECD_02725 0.51 -1.0
2,869,335 - ECD_02725 0.51 +0.4
2,869,338 - ECD_02725 0.51 +0.5
2,869,344 - ECD_02725 0.52 +0.6
2,869,379 + ECD_02725 0.57 -0.5
2,869,420 - ECD_02725 0.63 +0.6
2,869,420 - ECD_02725 0.63 -1.1
2,869,461 - ECD_02725 0.69 -0.7
2,869,468 + ECD_02725 0.70 +0.2
2,869,468 + ECD_02725 0.70 +0.1
2,869,468 + ECD_02725 0.70 -0.3
2,869,469 - ECD_02725 0.70 +0.2
2,869,469 - ECD_02725 0.70 -0.1
2,869,469 - ECD_02725 0.70 -0.0
2,869,469 - ECD_02725 0.70 -0.5
2,869,469 - ECD_02725 0.70 +0.1
2,869,469 - ECD_02725 0.70 -0.7
2,869,469 - ECD_02725 0.70 +0.2
2,869,487 + ECD_02725 0.72 +2.6
2,869,487 + ECD_02725 0.72 -0.1
2,869,487 + ECD_02725 0.72 +1.1
2,869,488 - ECD_02725 0.73 +0.1
2,869,488 - ECD_02725 0.73 -1.6
2,869,488 - ECD_02725 0.73 -0.2
2,869,488 - ECD_02725 0.73 +0.5
2,869,488 - ECD_02725 0.73 -2.1
2,869,488 - ECD_02725 0.73 +0.1
2,869,488 - ECD_02725 0.73 +0.8
2,869,488 - ECD_02725 0.73 +0.4
2,869,493 + ECD_02725 0.73 -1.2
2,869,493 + ECD_02725 0.73 -1.3
2,869,510 + ECD_02725 0.76 -1.5
2,869,510 + ECD_02725 0.76 +0.8
2,869,510 + ECD_02725 0.76 -0.2
2,869,511 - ECD_02725 0.76 +0.5
2,869,511 - ECD_02725 0.76 -0.3
2,869,511 - ECD_02725 0.76 +0.8
2,869,511 - ECD_02725 0.76 +0.5
2,869,552 - ECD_02725 0.82 +1.1
2,869,667 + -0.1
2,869,667 + +0.2
2,869,668 - +0.8
2,869,682 + +0.2
2,869,766 + -1.4
2,869,767 - +0.6
2,869,767 - -1.2
2,869,822 - ECD_02726 0.13 -1.1
2,869,839 + ECD_02726 0.15 -0.4
2,869,842 + ECD_02726 0.15 -0.4
2,869,916 - ECD_02726 0.23 +0.6
2,870,091 - ECD_02726 0.43 +1.6
2,870,176 + ECD_02726 0.52 +0.3
2,870,176 + ECD_02726 0.52 +0.1
2,870,177 - ECD_02726 0.52 -1.1
2,870,177 - ECD_02726 0.52 -0.8
2,870,177 - ECD_02726 0.52 +1.3
2,870,177 - ECD_02726 0.52 -0.9
2,870,206 - ECD_02726 0.56 +0.3
2,870,226 + ECD_02726 0.58 +0.8
2,870,239 - ECD_02726 0.59 +0.6
2,870,242 - ECD_02726 0.60 +1.6
2,870,242 - ECD_02726 0.60 -0.2
2,870,266 - ECD_02726 0.62 -0.2
2,870,403 - ECD_02726 0.78 -0.7
2,870,403 - ECD_02726 0.78 +1.6
2,870,532 - +0.2
2,870,615 - -0.0
2,870,615 - +1.2
2,870,615 - +0.7
2,870,636 + -0.0
2,870,643 + +0.1
2,870,644 - -1.5
2,870,644 - +0.2
2,870,671 + +1.1
2,870,671 + -2.2
2,870,671 + +0.4
2,870,676 + +0.5
2,870,676 + -1.6
2,870,677 - +1.1
2,870,677 - +0.4
2,870,677 - -0.2
2,870,677 - -0.1
2,870,709 + -1.4
2,870,709 + -1.4
2,870,709 + +0.4
2,870,709 + +0.5
2,870,709 + -0.5
2,870,710 - +0.1
2,870,710 - +0.2
2,870,710 - -1.5
2,870,710 - +0.1
2,870,710 - +0.7
2,870,710 - +0.6
2,870,710 - -0.8
2,870,710 - -0.1
2,870,710 - +0.6
2,870,710 - -0.3
2,870,710 - -0.6
2,870,714 + -1.1
2,870,733 + -1.7
2,870,751 + -1.2
2,870,751 + -0.8
2,870,809 + ECD_02727 0.18 +0.1
2,870,809 + ECD_02727 0.18 -0.4
2,870,809 + ECD_02727 0.18 -1.5
2,870,809 + ECD_02727 0.18 +0.2
2,870,809 + ECD_02727 0.18 +0.1
2,870,809 + ECD_02727 0.18 -0.7
2,870,809 + ECD_02727 0.18 +2.0
2,870,809 + ECD_02727 0.18 +0.4
2,870,809 + ECD_02727 0.18 -0.3
2,870,809 + ECD_02727 0.18 -0.5
2,870,809 + ECD_02727 0.18 -1.3
2,870,809 + ECD_02727 0.18 -0.3
2,870,809 + ECD_02727 0.18 -2.6
2,870,810 - ECD_02727 0.18 -0.3
2,870,810 - ECD_02727 0.18 +0.7
2,870,810 - ECD_02727 0.18 -0.9
2,870,810 - ECD_02727 0.18 -0.2
2,870,810 - ECD_02727 0.18 +1.3
2,870,839 + ECD_02727 0.24 -0.7
2,870,850 + ECD_02727 0.26 +0.6
2,870,851 - ECD_02727 0.26 -0.1
2,870,967 + ECD_02727 0.48 +1.1
2,870,968 - ECD_02727 0.48 -0.5
2,871,092 + ECD_02727 0.72 +0.4
2,871,155 + ECD_02727 0.84 -1.9
2,871,155 + ECD_02727 0.84 +0.4
2,871,162 + ECD_02727 0.86 -0.2
2,871,162 + ECD_02727 0.86 -0.1
2,871,183 - ECD_02727 0.90 +0.8
2,871,183 - ECD_02727 0.90 -0.6
2,871,183 - ECD_02727 0.90 +0.2
2,871,228 + -1.1
2,871,228 + -0.6
2,871,228 + +0.2
2,871,229 - +0.5
2,871,229 - -1.4
2,871,229 - +0.3
2,871,251 + -0.5
2,871,258 + +0.6
2,871,258 + -0.0
2,871,258 + -0.5
2,871,258 + -0.3
2,871,259 - -0.6
2,871,259 - +0.2
2,871,259 - -0.0
2,871,312 + +0.3
2,871,357 + ECD_02728 0.20 -0.4
2,871,388 - ECD_02728 0.27 -1.4
2,871,388 - ECD_02728 0.27 +0.9
2,871,410 + ECD_02728 0.33 -1.0
2,871,411 - ECD_02728 0.33 +1.1
2,871,411 - ECD_02728 0.33 +0.2
2,871,411 - ECD_02728 0.33 -0.4
2,871,483 - ECD_02728 0.51 +0.0
2,871,503 + ECD_02728 0.56 -0.7
2,871,503 + ECD_02728 0.56 +0.3
2,871,504 - ECD_02728 0.56 -1.2
2,871,504 - ECD_02728 0.56 +0.0
2,871,504 - ECD_02728 0.56 +0.6
2,871,504 - ECD_02728 0.56 -0.4
2,871,506 + ECD_02728 0.56 -1.7
2,871,507 - ECD_02728 0.57 +0.0
2,871,549 + ECD_02728 0.67 -0.3
2,871,549 + ECD_02728 0.67 -1.2
2,871,550 - ECD_02728 0.67 -2.5
2,871,571 + ECD_02728 0.72 -0.3
2,871,572 - ECD_02728 0.73 +1.6
2,871,572 - ECD_02728 0.73 +0.1
2,871,572 - ECD_02728 0.73 +0.8
2,871,572 - ECD_02728 0.73 +0.6
2,871,572 - ECD_02728 0.73 -0.4
2,871,599 + ECD_02728 0.79 -0.9

Or see this region's nucleotide sequence