Strain Fitness in Escherichia coli BL21 around ECD_02724

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02723 and ECD_02724 are separated by 90 nucleotidesECD_02724 and ECD_02725 are separated by 5 nucleotidesECD_02725 and ECD_02726 are separated by 24 nucleotides ECD_02723: ECD_02723 - peptide chain release factor RF-2, at 2,866,044 to 2,867,142 _02723 ECD_02724: ECD_02724 - ssDNA exonuclease, 5, at 2,867,233 to 2,868,966 _02724 ECD_02725: ECD_02725 - protein disulfide isomerase II, at 2,868,972 to 2,869,682 _02725 ECD_02726: ECD_02726 - site-specific tyrosine recombinase, at 2,869,707 to 2,870,603 _02726 Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -2 -1 0 1 2at 2867.183 kb on - strandat 2867.183 kb on - strandat 2867.183 kb on - strandat 2867.183 kb on - strandat 2867.247 kb on + strandat 2867.248 kb on - strandat 2867.304 kb on + strandat 2867.304 kb on + strandat 2867.304 kb on + strandat 2867.306 kb on + strandat 2867.306 kb on + strandat 2867.307 kb on - strandat 2867.361 kb on + strandat 2867.608 kb on - strand, within ECD_02724at 2867.699 kb on - strand, within ECD_02724at 2867.711 kb on + strand, within ECD_02724at 2867.711 kb on + strand, within ECD_02724at 2867.711 kb on + strand, within ECD_02724at 2867.711 kb on + strand, within ECD_02724at 2867.712 kb on - strand, within ECD_02724at 2867.712 kb on - strand, within ECD_02724at 2867.712 kb on - strand, within ECD_02724at 2867.745 kb on + strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.746 kb on - strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.885 kb on + strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2867.886 kb on - strand, within ECD_02724at 2868.070 kb on - strand, within ECD_02724at 2868.070 kb on - strand, within ECD_02724at 2868.070 kb on - strand, within ECD_02724at 2868.070 kb on - strand, within ECD_02724at 2868.119 kb on - strand, within ECD_02724at 2868.175 kb on - strand, within ECD_02724at 2868.237 kb on + strand, within ECD_02724at 2868.237 kb on + strand, within ECD_02724at 2868.237 kb on + strand, within ECD_02724at 2868.240 kb on + strand, within ECD_02724at 2868.241 kb on - strand, within ECD_02724at 2868.420 kb on + strand, within ECD_02724at 2868.436 kb on - strand, within ECD_02724at 2868.549 kb on + strand, within ECD_02724at 2868.549 kb on + strand, within ECD_02724at 2868.550 kb on - strand, within ECD_02724at 2868.550 kb on - strand, within ECD_02724at 2868.571 kb on + strand, within ECD_02724at 2868.572 kb on - strand, within ECD_02724at 2868.572 kb on - strand, within ECD_02724at 2868.617 kb on - strand, within ECD_02724at 2868.653 kb on + strand, within ECD_02724at 2868.653 kb on + strand, within ECD_02724at 2868.653 kb on + strand, within ECD_02724at 2868.653 kb on + strand, within ECD_02724at 2868.654 kb on - strand, within ECD_02724at 2868.654 kb on - strand, within ECD_02724at 2868.773 kb on + strand, within ECD_02724at 2868.773 kb on + strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.774 kb on - strand, within ECD_02724at 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.825 kb on + strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.826 kb on - strandat 2868.832 kb on - strandat 2868.879 kb on - strandat 2868.879 kb on - strandat 2868.881 kb on - strandat 2868.881 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.953 kb on - strandat 2868.973 kb on + strandat 2868.974 kb on - strandat 2868.974 kb on - strandat 2868.977 kb on + strandat 2869.108 kb on - strand, within ECD_02725at 2869.108 kb on - strand, within ECD_02725at 2869.111 kb on + strand, within ECD_02725at 2869.111 kb on + strand, within ECD_02725at 2869.158 kb on - strand, within ECD_02725at 2869.158 kb on - strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.208 kb on + strand, within ECD_02725at 2869.209 kb on - strand, within ECD_02725at 2869.209 kb on - strand, within ECD_02725at 2869.290 kb on - strand, within ECD_02725at 2869.291 kb on + strand, within ECD_02725at 2869.291 kb on + strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.292 kb on - strand, within ECD_02725at 2869.334 kb on + strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.335 kb on - strand, within ECD_02725at 2869.338 kb on - strand, within ECD_02725at 2869.344 kb on - strand, within ECD_02725at 2869.379 kb on + strand, within ECD_02725at 2869.420 kb on - strand, within ECD_02725at 2869.420 kb on - strand, within ECD_02725at 2869.461 kb on - strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.468 kb on + strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.469 kb on - strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.487 kb on + strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.488 kb on - strand, within ECD_02725at 2869.493 kb on + strand, within ECD_02725at 2869.493 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.510 kb on + strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.511 kb on - strand, within ECD_02725at 2869.552 kb on - strand, within ECD_02725at 2869.667 kb on + strandat 2869.667 kb on + strandat 2869.668 kb on - strandat 2869.682 kb on + strandat 2869.766 kb on + strandat 2869.767 kb on - strandat 2869.767 kb on - strandat 2869.822 kb on - strand, within ECD_02726at 2869.839 kb on + strand, within ECD_02726at 2869.842 kb on + strand, within ECD_02726at 2869.916 kb on - strand, within ECD_02726

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,867,183 - +0.5
2,867,183 - +0.1
2,867,183 - +0.2
2,867,183 - +0.9
2,867,247 + -1.5
2,867,248 - -0.2
2,867,304 + -1.0
2,867,304 + -1.5
2,867,304 + +1.6
2,867,306 + -0.5
2,867,306 + -1.0
2,867,307 - -2.4
2,867,361 + +0.4
2,867,608 - ECD_02724 0.22 -0.8
2,867,699 - ECD_02724 0.27 +0.1
2,867,711 + ECD_02724 0.28 -1.3
2,867,711 + ECD_02724 0.28 +1.1
2,867,711 + ECD_02724 0.28 -0.0
2,867,711 + ECD_02724 0.28 -2.2
2,867,712 - ECD_02724 0.28 -0.3
2,867,712 - ECD_02724 0.28 +0.9
2,867,712 - ECD_02724 0.28 -1.3
2,867,745 + ECD_02724 0.30 +1.4
2,867,746 - ECD_02724 0.30 -0.0
2,867,746 - ECD_02724 0.30 +0.7
2,867,746 - ECD_02724 0.30 +0.3
2,867,746 - ECD_02724 0.30 -0.1
2,867,746 - ECD_02724 0.30 -0.5
2,867,746 - ECD_02724 0.30 -0.3
2,867,885 + ECD_02724 0.38 +0.0
2,867,885 + ECD_02724 0.38 -0.7
2,867,885 + ECD_02724 0.38 -0.2
2,867,885 + ECD_02724 0.38 -1.9
2,867,885 + ECD_02724 0.38 -0.6
2,867,885 + ECD_02724 0.38 -0.2
2,867,885 + ECD_02724 0.38 -1.6
2,867,886 - ECD_02724 0.38 -1.4
2,867,886 - ECD_02724 0.38 +0.4
2,867,886 - ECD_02724 0.38 -0.2
2,867,886 - ECD_02724 0.38 -1.6
2,867,886 - ECD_02724 0.38 +0.0
2,867,886 - ECD_02724 0.38 -0.8
2,868,070 - ECD_02724 0.48 -1.2
2,868,070 - ECD_02724 0.48 -1.1
2,868,070 - ECD_02724 0.48 -1.5
2,868,070 - ECD_02724 0.48 -2.3
2,868,119 - ECD_02724 0.51 -0.0
2,868,175 - ECD_02724 0.54 -1.8
2,868,237 + ECD_02724 0.58 -0.0
2,868,237 + ECD_02724 0.58 +0.0
2,868,237 + ECD_02724 0.58 -0.4
2,868,240 + ECD_02724 0.58 -1.3
2,868,241 - ECD_02724 0.58 -0.6
2,868,420 + ECD_02724 0.68 -1.6
2,868,436 - ECD_02724 0.69 -0.6
2,868,549 + ECD_02724 0.76 -1.0
2,868,549 + ECD_02724 0.76 -0.2
2,868,550 - ECD_02724 0.76 -1.1
2,868,550 - ECD_02724 0.76 -0.4
2,868,571 + ECD_02724 0.77 -1.3
2,868,572 - ECD_02724 0.77 -2.5
2,868,572 - ECD_02724 0.77 -0.0
2,868,617 - ECD_02724 0.80 +1.1
2,868,653 + ECD_02724 0.82 +0.6
2,868,653 + ECD_02724 0.82 -1.1
2,868,653 + ECD_02724 0.82 +0.0
2,868,653 + ECD_02724 0.82 -0.1
2,868,654 - ECD_02724 0.82 +0.3
2,868,654 - ECD_02724 0.82 +0.0
2,868,773 + ECD_02724 0.89 -1.8
2,868,773 + ECD_02724 0.89 -0.6
2,868,774 - ECD_02724 0.89 -0.5
2,868,774 - ECD_02724 0.89 -0.3
2,868,774 - ECD_02724 0.89 -0.8
2,868,774 - ECD_02724 0.89 -0.3
2,868,825 + -1.2
2,868,825 + -1.4
2,868,825 + -0.5
2,868,825 + +1.6
2,868,825 + -0.9
2,868,826 - -1.3
2,868,826 - -0.5
2,868,826 - -1.5
2,868,826 - -2.4
2,868,832 - -1.1
2,868,879 - -2.6
2,868,879 - +0.8
2,868,881 - -1.6
2,868,881 - +0.6
2,868,953 - -0.2
2,868,953 - -0.4
2,868,953 - -0.0
2,868,953 - -0.7
2,868,953 - -1.5
2,868,953 - +0.6
2,868,973 + -1.1
2,868,974 - +0.5
2,868,974 - -0.9
2,868,977 + +0.1
2,869,108 - ECD_02725 0.19 +0.5
2,869,108 - ECD_02725 0.19 +0.6
2,869,111 + ECD_02725 0.20 +0.6
2,869,111 + ECD_02725 0.20 +0.2
2,869,158 - ECD_02725 0.26 -1.1
2,869,158 - ECD_02725 0.26 +0.4
2,869,208 + ECD_02725 0.33 -1.1
2,869,208 + ECD_02725 0.33 -0.2
2,869,208 + ECD_02725 0.33 -0.1
2,869,209 - ECD_02725 0.33 +0.4
2,869,209 - ECD_02725 0.33 +0.5
2,869,290 - ECD_02725 0.45 -0.1
2,869,291 + ECD_02725 0.45 -0.0
2,869,291 + ECD_02725 0.45 +0.8
2,869,292 - ECD_02725 0.45 -0.2
2,869,292 - ECD_02725 0.45 +0.3
2,869,292 - ECD_02725 0.45 -1.8
2,869,292 - ECD_02725 0.45 -0.4
2,869,334 + ECD_02725 0.51 -0.5
2,869,335 - ECD_02725 0.51 +0.8
2,869,335 - ECD_02725 0.51 -0.5
2,869,335 - ECD_02725 0.51 +0.1
2,869,335 - ECD_02725 0.51 -0.6
2,869,335 - ECD_02725 0.51 -1.0
2,869,335 - ECD_02725 0.51 +0.4
2,869,338 - ECD_02725 0.51 +0.5
2,869,344 - ECD_02725 0.52 +0.6
2,869,379 + ECD_02725 0.57 -0.5
2,869,420 - ECD_02725 0.63 +0.6
2,869,420 - ECD_02725 0.63 -1.1
2,869,461 - ECD_02725 0.69 -0.7
2,869,468 + ECD_02725 0.70 +0.2
2,869,468 + ECD_02725 0.70 +0.1
2,869,468 + ECD_02725 0.70 -0.3
2,869,469 - ECD_02725 0.70 +0.2
2,869,469 - ECD_02725 0.70 -0.1
2,869,469 - ECD_02725 0.70 -0.0
2,869,469 - ECD_02725 0.70 -0.5
2,869,469 - ECD_02725 0.70 +0.1
2,869,469 - ECD_02725 0.70 -0.7
2,869,469 - ECD_02725 0.70 +0.2
2,869,487 + ECD_02725 0.72 +2.6
2,869,487 + ECD_02725 0.72 -0.1
2,869,487 + ECD_02725 0.72 +1.1
2,869,488 - ECD_02725 0.73 +0.1
2,869,488 - ECD_02725 0.73 -1.6
2,869,488 - ECD_02725 0.73 -0.2
2,869,488 - ECD_02725 0.73 +0.5
2,869,488 - ECD_02725 0.73 -2.1
2,869,488 - ECD_02725 0.73 +0.1
2,869,488 - ECD_02725 0.73 +0.8
2,869,488 - ECD_02725 0.73 +0.4
2,869,493 + ECD_02725 0.73 -1.2
2,869,493 + ECD_02725 0.73 -1.3
2,869,510 + ECD_02725 0.76 -1.5
2,869,510 + ECD_02725 0.76 +0.8
2,869,510 + ECD_02725 0.76 -0.2
2,869,511 - ECD_02725 0.76 +0.5
2,869,511 - ECD_02725 0.76 -0.3
2,869,511 - ECD_02725 0.76 +0.8
2,869,511 - ECD_02725 0.76 +0.5
2,869,552 - ECD_02725 0.82 +1.1
2,869,667 + -0.1
2,869,667 + +0.2
2,869,668 - +0.8
2,869,682 + +0.2
2,869,766 + -1.4
2,869,767 - +0.6
2,869,767 - -1.2
2,869,822 - ECD_02726 0.13 -1.1
2,869,839 + ECD_02726 0.15 -0.4
2,869,842 + ECD_02726 0.15 -0.4
2,869,916 - ECD_02726 0.23 +0.6

Or see this region's nucleotide sequence