Strain Fitness in Escherichia coli BL21 around ECD_02709

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02708 and ECD_02709 are separated by 47 nucleotidesECD_02709 and ECD_02710 are separated by 102 nucleotides ECD_02708: ECD_02708 - XdhC-CoxI family protein with NAD(P)-binding Rossman fold, at 2,843,476 to 2,845,101 _02708 ECD_02709: ECD_02709 - putative selenium-dependent hydroxylase accessory protein, at 2,845,149 to 2,845,919 _02709 ECD_02710: ECD_02710 - CTP:molybdopterin cytidylyltransferase, at 2,846,022 to 2,846,600 _02710 Position (kb) 2845 2846Strain fitness (log2 ratio) -2 -1 0 1 2at 2844.181 kb on - strand, within ECD_02708at 2844.181 kb on - strand, within ECD_02708at 2844.181 kb on - strand, within ECD_02708at 2844.226 kb on - strand, within ECD_02708at 2844.239 kb on + strand, within ECD_02708at 2844.239 kb on + strand, within ECD_02708at 2844.240 kb on - strand, within ECD_02708at 2844.240 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708at 2844.248 kb on - strand, within ECD_02708at 2844.358 kb on + strand, within ECD_02708at 2844.362 kb on - strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.409 kb on + strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.410 kb on - strand, within ECD_02708at 2844.416 kb on + strand, within ECD_02708at 2844.416 kb on + strand, within ECD_02708at 2844.417 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.434 kb on - strand, within ECD_02708at 2844.444 kb on + strand, within ECD_02708at 2844.444 kb on + strand, within ECD_02708at 2844.444 kb on + strand, within ECD_02708at 2844.445 kb on - strand, within ECD_02708at 2844.445 kb on - strand, within ECD_02708at 2844.445 kb on - strand, within ECD_02708at 2844.598 kb on - strand, within ECD_02708at 2844.699 kb on - strand, within ECD_02708at 2844.703 kb on - strand, within ECD_02708at 2844.703 kb on - strand, within ECD_02708at 2844.727 kb on + strand, within ECD_02708at 2844.813 kb on + strand, within ECD_02708at 2844.814 kb on - strand, within ECD_02708at 2844.814 kb on - strand, within ECD_02708at 2844.818 kb on - strand, within ECD_02708at 2844.818 kb on - strand, within ECD_02708at 2844.873 kb on + strand, within ECD_02708at 2844.874 kb on - strand, within ECD_02708at 2844.874 kb on - strand, within ECD_02708at 2844.874 kb on - strand, within ECD_02708at 2844.874 kb on - strand, within ECD_02708at 2844.898 kb on - strand, within ECD_02708at 2844.898 kb on - strand, within ECD_02708at 2844.898 kb on - strand, within ECD_02708at 2844.898 kb on - strand, within ECD_02708at 2844.963 kb on + strandat 2844.964 kb on - strandat 2844.972 kb on + strandat 2844.972 kb on + strandat 2844.973 kb on - strandat 2844.973 kb on - strandat 2845.047 kb on + strandat 2845.095 kb on + strandat 2845.101 kb on + strandat 2845.188 kb on + strandat 2845.188 kb on + strandat 2845.188 kb on + strandat 2845.188 kb on + strandat 2845.188 kb on + strandat 2845.189 kb on - strandat 2845.189 kb on - strandat 2845.189 kb on - strandat 2845.190 kb on + strandat 2845.191 kb on - strandat 2845.212 kb on + strandat 2845.212 kb on + strandat 2845.212 kb on + strandat 2845.213 kb on - strandat 2845.400 kb on + strand, within ECD_02709at 2845.401 kb on - strand, within ECD_02709at 2845.401 kb on - strand, within ECD_02709at 2845.401 kb on - strand, within ECD_02709at 2845.401 kb on - strand, within ECD_02709at 2845.457 kb on + strand, within ECD_02709at 2845.457 kb on + strand, within ECD_02709at 2845.457 kb on + strand, within ECD_02709at 2845.458 kb on - strand, within ECD_02709at 2845.458 kb on - strand, within ECD_02709at 2845.458 kb on - strand, within ECD_02709at 2845.458 kb on - strand, within ECD_02709at 2845.458 kb on - strand, within ECD_02709at 2845.570 kb on - strand, within ECD_02709at 2845.570 kb on - strand, within ECD_02709at 2845.570 kb on - strand, within ECD_02709at 2845.570 kb on - strand, within ECD_02709at 2845.617 kb on - strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.679 kb on + strand, within ECD_02709at 2845.680 kb on - strand, within ECD_02709at 2845.680 kb on - strand, within ECD_02709at 2845.745 kb on + strand, within ECD_02709at 2845.751 kb on + strand, within ECD_02709at 2845.751 kb on + strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.752 kb on - strand, within ECD_02709at 2845.770 kb on + strand, within ECD_02709at 2845.909 kb on - strandat 2845.959 kb on + strandat 2846.004 kb on - strandat 2846.006 kb on - strandat 2846.006 kb on - strandat 2846.039 kb on + strandat 2846.040 kb on - strandat 2846.040 kb on - strandat 2846.041 kb on + strandat 2846.226 kb on - strand, within ECD_02710at 2846.257 kb on + strand, within ECD_02710at 2846.509 kb on - strand, within ECD_02710at 2846.630 kb on - strandat 2846.896 kb on - strandat 2846.901 kb on + strandat 2846.901 kb on + strandat 2846.901 kb on + strandat 2846.902 kb on - strandat 2846.902 kb on - strandat 2846.902 kb on - strandat 2846.903 kb on + strandat 2846.903 kb on + strandat 2846.903 kb on + strandat 2846.903 kb on + strandat 2846.903 kb on + strandat 2846.904 kb on - strandat 2846.908 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
2,844,181 - ECD_02708 0.43 -1.5
2,844,181 - ECD_02708 0.43 -0.0
2,844,181 - ECD_02708 0.43 +0.5
2,844,226 - ECD_02708 0.46 -1.1
2,844,239 + ECD_02708 0.47 +0.0
2,844,239 + ECD_02708 0.47 +0.2
2,844,240 - ECD_02708 0.47 +0.6
2,844,240 - ECD_02708 0.47 +0.9
2,844,248 - ECD_02708 0.47 -1.7
2,844,248 - ECD_02708 0.47 -1.3
2,844,248 - ECD_02708 0.47 -0.6
2,844,358 + ECD_02708 0.54 +0.1
2,844,362 - ECD_02708 0.54 +0.9
2,844,409 + ECD_02708 0.57 -0.7
2,844,409 + ECD_02708 0.57 +1.0
2,844,409 + ECD_02708 0.57 -0.2
2,844,409 + ECD_02708 0.57 +0.5
2,844,409 + ECD_02708 0.57 +0.6
2,844,409 + ECD_02708 0.57 -0.7
2,844,409 + ECD_02708 0.57 +0.3
2,844,410 - ECD_02708 0.57 +1.7
2,844,410 - ECD_02708 0.57 -0.2
2,844,410 - ECD_02708 0.57 +0.3
2,844,410 - ECD_02708 0.57 -0.3
2,844,410 - ECD_02708 0.57 -0.9
2,844,410 - ECD_02708 0.57 +0.2
2,844,410 - ECD_02708 0.57 +0.8
2,844,410 - ECD_02708 0.57 +0.3
2,844,410 - ECD_02708 0.57 +0.3
2,844,410 - ECD_02708 0.57 +0.3
2,844,410 - ECD_02708 0.57 +0.1
2,844,410 - ECD_02708 0.57 -0.6
2,844,416 + ECD_02708 0.58 -0.1
2,844,416 + ECD_02708 0.58 -0.2
2,844,417 - ECD_02708 0.58 +0.4
2,844,434 - ECD_02708 0.59 +1.2
2,844,434 - ECD_02708 0.59 +0.4
2,844,434 - ECD_02708 0.59 -0.8
2,844,434 - ECD_02708 0.59 -0.3
2,844,434 - ECD_02708 0.59 +1.5
2,844,434 - ECD_02708 0.59 +0.6
2,844,434 - ECD_02708 0.59 -0.6
2,844,444 + ECD_02708 0.60 +0.5
2,844,444 + ECD_02708 0.60 -0.5
2,844,444 + ECD_02708 0.60 +0.4
2,844,445 - ECD_02708 0.60 +0.4
2,844,445 - ECD_02708 0.60 -0.5
2,844,445 - ECD_02708 0.60 -0.0
2,844,598 - ECD_02708 0.69 -0.1
2,844,699 - ECD_02708 0.75 +1.1
2,844,703 - ECD_02708 0.75 +0.1
2,844,703 - ECD_02708 0.75 -0.8
2,844,727 + ECD_02708 0.77 +0.0
2,844,813 + ECD_02708 0.82 +0.3
2,844,814 - ECD_02708 0.82 -0.4
2,844,814 - ECD_02708 0.82 -0.1
2,844,818 - ECD_02708 0.83 -0.8
2,844,818 - ECD_02708 0.83 +0.6
2,844,873 + ECD_02708 0.86 -1.9
2,844,874 - ECD_02708 0.86 -0.4
2,844,874 - ECD_02708 0.86 +0.1
2,844,874 - ECD_02708 0.86 +1.1
2,844,874 - ECD_02708 0.86 +1.5
2,844,898 - ECD_02708 0.87 +0.6
2,844,898 - ECD_02708 0.87 +1.5
2,844,898 - ECD_02708 0.87 +0.2
2,844,898 - ECD_02708 0.87 -1.2
2,844,963 + +0.0
2,844,964 - +0.1
2,844,972 + +0.1
2,844,972 + +1.2
2,844,973 - +0.9
2,844,973 - -0.2
2,845,047 + -0.3
2,845,095 + +0.7
2,845,101 + +1.0
2,845,188 + +1.1
2,845,188 + -1.0
2,845,188 + -0.2
2,845,188 + -0.6
2,845,188 + -0.3
2,845,189 - +0.6
2,845,189 - -0.6
2,845,189 - -0.9
2,845,190 + +1.4
2,845,191 - -0.6
2,845,212 + -0.2
2,845,212 + +0.1
2,845,212 + +1.8
2,845,213 - -1.0
2,845,400 + ECD_02709 0.33 +0.7
2,845,401 - ECD_02709 0.33 -0.2
2,845,401 - ECD_02709 0.33 +1.3
2,845,401 - ECD_02709 0.33 +0.4
2,845,401 - ECD_02709 0.33 +0.8
2,845,457 + ECD_02709 0.40 +1.0
2,845,457 + ECD_02709 0.40 -1.2
2,845,457 + ECD_02709 0.40 +1.1
2,845,458 - ECD_02709 0.40 +1.0
2,845,458 - ECD_02709 0.40 +0.0
2,845,458 - ECD_02709 0.40 +0.7
2,845,458 - ECD_02709 0.40 +0.9
2,845,458 - ECD_02709 0.40 +0.1
2,845,570 - ECD_02709 0.55 +0.1
2,845,570 - ECD_02709 0.55 +0.6
2,845,570 - ECD_02709 0.55 +0.6
2,845,570 - ECD_02709 0.55 +1.2
2,845,617 - ECD_02709 0.61 +0.2
2,845,679 + ECD_02709 0.69 -0.7
2,845,679 + ECD_02709 0.69 +0.3
2,845,679 + ECD_02709 0.69 +0.0
2,845,679 + ECD_02709 0.69 +0.1
2,845,679 + ECD_02709 0.69 -0.6
2,845,679 + ECD_02709 0.69 +1.1
2,845,679 + ECD_02709 0.69 -0.6
2,845,680 - ECD_02709 0.69 +0.6
2,845,680 - ECD_02709 0.69 +0.6
2,845,745 + ECD_02709 0.77 -0.0
2,845,751 + ECD_02709 0.78 -1.8
2,845,751 + ECD_02709 0.78 -1.4
2,845,752 - ECD_02709 0.78 +0.4
2,845,752 - ECD_02709 0.78 +0.2
2,845,752 - ECD_02709 0.78 +0.8
2,845,752 - ECD_02709 0.78 +0.3
2,845,752 - ECD_02709 0.78 -2.7
2,845,752 - ECD_02709 0.78 +0.3
2,845,752 - ECD_02709 0.78 +0.1
2,845,752 - ECD_02709 0.78 -0.4
2,845,752 - ECD_02709 0.78 +0.6
2,845,752 - ECD_02709 0.78 -0.2
2,845,752 - ECD_02709 0.78 +0.2
2,845,752 - ECD_02709 0.78 +0.2
2,845,752 - ECD_02709 0.78 -0.6
2,845,752 - ECD_02709 0.78 +0.2
2,845,752 - ECD_02709 0.78 +0.4
2,845,752 - ECD_02709 0.78 +0.1
2,845,770 + ECD_02709 0.81 +0.9
2,845,909 - -0.7
2,845,959 + +1.3
2,846,004 - -0.5
2,846,006 - +0.2
2,846,006 - -0.0
2,846,039 + +1.0
2,846,040 - +0.1
2,846,040 - -0.3
2,846,041 + +0.2
2,846,226 - ECD_02710 0.35 +0.0
2,846,257 + ECD_02710 0.41 -0.6
2,846,509 - ECD_02710 0.84 +0.4
2,846,630 - +0.6
2,846,896 - +1.0
2,846,901 + +0.4
2,846,901 + -1.5
2,846,901 + -0.2
2,846,902 - +1.1
2,846,902 - +0.5
2,846,902 - -0.9
2,846,903 + +1.2
2,846,903 + +0.0
2,846,903 + +0.2
2,846,903 + -0.2
2,846,903 + -0.2
2,846,904 - -1.2
2,846,908 + +0.1

Or see this region's nucleotide sequence