Strain Fitness in Escherichia coli BL21 around ECD_02549

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02547 and ECD_02548 are separated by 127 nucleotidesECD_02548 and ECD_02549 are separated by 68 nucleotidesECD_02549 and ECD_02550 are separated by 79 nucleotidesECD_02550 and ECD_02551 are separated by 144 nucleotides ECD_02547: ECD_02547 - alanyl-tRNA synthetase, at 2,659,347 to 2,661,977 _02547 ECD_02548: ECD_02548 - regulatory protein for RecA, at 2,662,105 to 2,662,605 _02548 ECD_02549: ECD_02549 - DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor, at 2,662,674 to 2,663,735 _02549 ECD_02550: ECD_02550 - nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase, at 2,663,815 to 2,664,312 _02550 ECD_02551: ECD_02551 - membrane-bound lytic murein transglycosylase B, at 2,664,457 to 2,665,542 _02551 Position (kb) 2662 2663 2664Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2662.046 kb on - strandat 2662.046 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.063 kb on - strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.093 kb on + strandat 2662.094 kb on - strandat 2662.098 kb on + strandat 2662.161 kb on - strand, within ECD_02548at 2662.305 kb on + strand, within ECD_02548at 2662.333 kb on - strand, within ECD_02548at 2662.403 kb on + strand, within ECD_02548at 2662.404 kb on - strand, within ECD_02548at 2662.440 kb on - strand, within ECD_02548at 2662.485 kb on + strand, within ECD_02548at 2662.503 kb on + strand, within ECD_02548at 2662.574 kb on + strandat 2662.575 kb on - strandat 2662.575 kb on - strandat 2662.611 kb on - strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.616 kb on + strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.617 kb on - strandat 2662.623 kb on + strandat 2662.624 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.656 kb on - strandat 2662.659 kb on + strandat 2662.659 kb on + strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.660 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.717 kb on - strandat 2662.800 kb on - strand, within ECD_02549at 2662.800 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.856 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.862 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.897 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.922 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2662.932 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.081 kb on - strand, within ECD_02549at 2663.145 kb on - strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.225 kb on + strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.226 kb on - strand, within ECD_02549at 2663.319 kb on + strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.320 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.418 kb on - strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.425 kb on + strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.426 kb on - strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.471 kb on + strand, within ECD_02549at 2663.519 kb on + strand, within ECD_02549at 2663.667 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.775 kb on - strandat 2663.794 kb on - strandat 2663.795 kb on + strandat 2663.800 kb on + strandat 2663.801 kb on - strandat 2663.809 kb on - strandat 2663.809 kb on - strandat 2663.827 kb on + strandat 2663.827 kb on + strandat 2663.828 kb on - strandat 2663.858 kb on + strandat 2663.858 kb on + strandat 2663.859 kb on - strandat 2663.859 kb on - strandat 2663.865 kb on + strand, within ECD_02550at 2664.000 kb on + strand, within ECD_02550at 2664.006 kb on + strand, within ECD_02550at 2664.006 kb on + strand, within ECD_02550at 2664.006 kb on + strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.007 kb on - strand, within ECD_02550at 2664.009 kb on + strand, within ECD_02550at 2664.009 kb on + strand, within ECD_02550at 2664.009 kb on + strand, within ECD_02550at 2664.009 kb on + strand, within ECD_02550at 2664.009 kb on + strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.010 kb on - strand, within ECD_02550at 2664.021 kb on - strand, within ECD_02550at 2664.112 kb on + strand, within ECD_02550at 2664.146 kb on + strand, within ECD_02550at 2664.146 kb on + strand, within ECD_02550at 2664.146 kb on + strand, within ECD_02550at 2664.146 kb on + strand, within ECD_02550at 2664.146 kb on + strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.147 kb on - strand, within ECD_02550at 2664.181 kb on - strand, within ECD_02550at 2664.190 kb on - strand, within ECD_02550at 2664.223 kb on - strand, within ECD_02550at 2664.223 kb on - strand, within ECD_02550at 2664.241 kb on + strand, within ECD_02550at 2664.286 kb on + strandat 2664.286 kb on + strandat 2664.287 kb on - strandat 2664.287 kb on - strandat 2664.287 kb on - strandat 2664.337 kb on + strandat 2664.337 kb on + strandat 2664.338 kb on - strandat 2664.351 kb on + strandat 2664.351 kb on + strandat 2664.392 kb on - strandat 2664.420 kb on - strandat 2664.451 kb on - strandat 2664.451 kb on - strandat 2664.454 kb on + strandat 2664.454 kb on + strandat 2664.454 kb on + strandat 2664.454 kb on + strandat 2664.455 kb on - strandat 2664.455 kb on - strandat 2664.455 kb on - strandat 2664.455 kb on - strandat 2664.455 kb on - strandat 2664.458 kb on + strandat 2664.459 kb on - strandat 2664.459 kb on - strandat 2664.459 kb on - strandat 2664.459 kb on - strandat 2664.459 kb on - strandat 2664.464 kb on - strandat 2664.464 kb on - strandat 2664.464 kb on - strandat 2664.464 kb on - strandat 2664.490 kb on + strandat 2664.490 kb on + strandat 2664.519 kb on + strandat 2664.545 kb on + strandat 2664.545 kb on + strandat 2664.545 kb on + strandat 2664.546 kb on - strandat 2664.546 kb on - strandat 2664.546 kb on - strandat 2664.546 kb on - strandat 2664.569 kb on + strand, within ECD_02551at 2664.675 kb on - strand, within ECD_02551at 2664.678 kb on + strand, within ECD_02551at 2664.678 kb on + strand, within ECD_02551

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
2,662,046 - -0.3
2,662,046 - +0.6
2,662,063 - -0.8
2,662,063 - +0.7
2,662,063 - -0.4
2,662,063 - -0.4
2,662,063 - -1.5
2,662,063 - -0.2
2,662,063 - -0.4
2,662,093 + +1.0
2,662,093 + -2.3
2,662,093 + -1.9
2,662,093 + +0.1
2,662,093 + -0.2
2,662,093 + +0.3
2,662,094 - -0.2
2,662,098 + +0.1
2,662,161 - ECD_02548 0.11 -0.2
2,662,305 + ECD_02548 0.40 +1.6
2,662,333 - ECD_02548 0.46 +0.5
2,662,403 + ECD_02548 0.59 -0.3
2,662,404 - ECD_02548 0.60 +0.5
2,662,440 - ECD_02548 0.67 +1.2
2,662,485 + ECD_02548 0.76 -1.8
2,662,503 + ECD_02548 0.79 -1.3
2,662,574 + -0.8
2,662,575 - -0.6
2,662,575 - -1.2
2,662,611 - -0.2
2,662,616 + -0.3
2,662,616 + +1.3
2,662,616 + +0.9
2,662,617 - -1.0
2,662,617 - -0.7
2,662,617 - -0.6
2,662,617 - +0.0
2,662,617 - +1.0
2,662,623 + -0.0
2,662,624 - -0.4
2,662,656 - +0.1
2,662,656 - +0.8
2,662,656 - -0.3
2,662,656 - -1.5
2,662,659 + +1.2
2,662,659 + +0.2
2,662,660 - -0.7
2,662,660 - -0.3
2,662,660 - -0.5
2,662,660 - -0.3
2,662,660 - -0.3
2,662,717 - -0.1
2,662,717 - +0.5
2,662,717 - -0.0
2,662,717 - -0.0
2,662,800 - ECD_02549 0.12 +1.2
2,662,800 - ECD_02549 0.12 -1.2
2,662,856 - ECD_02549 0.17 -1.2
2,662,856 - ECD_02549 0.17 -0.0
2,662,862 - ECD_02549 0.18 -2.1
2,662,862 - ECD_02549 0.18 -0.6
2,662,862 - ECD_02549 0.18 +0.8
2,662,862 - ECD_02549 0.18 -0.9
2,662,897 - ECD_02549 0.21 +0.3
2,662,897 - ECD_02549 0.21 -2.4
2,662,897 - ECD_02549 0.21 -1.1
2,662,922 - ECD_02549 0.23 -0.3
2,662,922 - ECD_02549 0.23 -0.7
2,662,932 - ECD_02549 0.24 -1.0
2,662,932 - ECD_02549 0.24 -1.2
2,663,081 - ECD_02549 0.38 -1.8
2,663,081 - ECD_02549 0.38 -0.7
2,663,145 - ECD_02549 0.44 +0.8
2,663,225 + ECD_02549 0.52 -0.2
2,663,225 + ECD_02549 0.52 -1.0
2,663,225 + ECD_02549 0.52 -0.3
2,663,225 + ECD_02549 0.52 -0.2
2,663,225 + ECD_02549 0.52 -1.2
2,663,225 + ECD_02549 0.52 -0.0
2,663,226 - ECD_02549 0.52 +1.0
2,663,226 - ECD_02549 0.52 -1.0
2,663,226 - ECD_02549 0.52 -1.7
2,663,226 - ECD_02549 0.52 -1.9
2,663,226 - ECD_02549 0.52 +1.2
2,663,226 - ECD_02549 0.52 +0.6
2,663,226 - ECD_02549 0.52 +1.8
2,663,226 - ECD_02549 0.52 -1.1
2,663,226 - ECD_02549 0.52 -0.7
2,663,226 - ECD_02549 0.52 -0.4
2,663,226 - ECD_02549 0.52 +1.6
2,663,226 - ECD_02549 0.52 +0.7
2,663,226 - ECD_02549 0.52 -0.5
2,663,319 + ECD_02549 0.61 -0.7
2,663,320 - ECD_02549 0.61 -0.0
2,663,320 - ECD_02549 0.61 -0.4
2,663,418 - ECD_02549 0.70 -0.4
2,663,418 - ECD_02549 0.70 -1.2
2,663,418 - ECD_02549 0.70 -0.2
2,663,418 - ECD_02549 0.70 -0.2
2,663,418 - ECD_02549 0.70 -0.2
2,663,425 + ECD_02549 0.71 -1.4
2,663,425 + ECD_02549 0.71 -0.0
2,663,426 - ECD_02549 0.71 -2.1
2,663,426 - ECD_02549 0.71 -0.4
2,663,426 - ECD_02549 0.71 -1.8
2,663,426 - ECD_02549 0.71 -1.2
2,663,426 - ECD_02549 0.71 -0.4
2,663,426 - ECD_02549 0.71 -0.7
2,663,426 - ECD_02549 0.71 -1.3
2,663,426 - ECD_02549 0.71 -0.5
2,663,426 - ECD_02549 0.71 -1.7
2,663,426 - ECD_02549 0.71 -1.3
2,663,426 - ECD_02549 0.71 -2.3
2,663,471 + ECD_02549 0.75 -1.3
2,663,471 + ECD_02549 0.75 -0.4
2,663,519 + ECD_02549 0.80 -1.3
2,663,667 - -0.7
2,663,775 - -1.4
2,663,775 - -2.2
2,663,775 - +0.4
2,663,775 - +0.6
2,663,775 - +1.6
2,663,775 - +0.4
2,663,775 - -0.4
2,663,794 - -0.6
2,663,795 + -0.2
2,663,800 + -1.5
2,663,801 - +0.2
2,663,809 - -0.1
2,663,809 - +0.6
2,663,827 + +0.1
2,663,827 + -1.6
2,663,828 - -0.5
2,663,858 + -0.8
2,663,858 + +0.1
2,663,859 - -0.1
2,663,859 - -0.1
2,663,865 + ECD_02550 0.10 +0.1
2,664,000 + ECD_02550 0.37 -0.8
2,664,006 + ECD_02550 0.38 -1.4
2,664,006 + ECD_02550 0.38 +0.9
2,664,006 + ECD_02550 0.38 -0.1
2,664,007 - ECD_02550 0.39 +0.6
2,664,007 - ECD_02550 0.39 -0.3
2,664,007 - ECD_02550 0.39 -1.0
2,664,007 - ECD_02550 0.39 +0.3
2,664,007 - ECD_02550 0.39 +0.4
2,664,007 - ECD_02550 0.39 -0.9
2,664,007 - ECD_02550 0.39 -0.1
2,664,009 + ECD_02550 0.39 -0.5
2,664,009 + ECD_02550 0.39 -1.1
2,664,009 + ECD_02550 0.39 +0.4
2,664,009 + ECD_02550 0.39 -1.9
2,664,009 + ECD_02550 0.39 -0.0
2,664,010 - ECD_02550 0.39 -0.0
2,664,010 - ECD_02550 0.39 -0.8
2,664,010 - ECD_02550 0.39 -0.1
2,664,010 - ECD_02550 0.39 -1.8
2,664,010 - ECD_02550 0.39 +0.9
2,664,010 - ECD_02550 0.39 +0.6
2,664,010 - ECD_02550 0.39 -0.2
2,664,010 - ECD_02550 0.39 +0.3
2,664,010 - ECD_02550 0.39 -0.2
2,664,010 - ECD_02550 0.39 +0.6
2,664,021 - ECD_02550 0.41 -0.8
2,664,112 + ECD_02550 0.60 -1.1
2,664,146 + ECD_02550 0.66 -2.4
2,664,146 + ECD_02550 0.66 -0.1
2,664,146 + ECD_02550 0.66 -0.7
2,664,146 + ECD_02550 0.66 -0.8
2,664,146 + ECD_02550 0.66 -2.8
2,664,147 - ECD_02550 0.67 +0.4
2,664,147 - ECD_02550 0.67 -0.0
2,664,147 - ECD_02550 0.67 +1.2
2,664,147 - ECD_02550 0.67 +1.3
2,664,147 - ECD_02550 0.67 +0.3
2,664,147 - ECD_02550 0.67 +1.0
2,664,147 - ECD_02550 0.67 +0.2
2,664,147 - ECD_02550 0.67 +0.4
2,664,147 - ECD_02550 0.67 +0.4
2,664,147 - ECD_02550 0.67 +0.4
2,664,181 - ECD_02550 0.73 +0.6
2,664,190 - ECD_02550 0.75 +0.2
2,664,223 - ECD_02550 0.82 -0.2
2,664,223 - ECD_02550 0.82 +0.2
2,664,241 + ECD_02550 0.86 -1.0
2,664,286 + -1.9
2,664,286 + -0.4
2,664,287 - +0.3
2,664,287 - +0.2
2,664,287 - +0.1
2,664,337 + -0.2
2,664,337 + +0.4
2,664,338 - +0.8
2,664,351 + -0.1
2,664,351 + +0.7
2,664,392 - +0.4
2,664,420 - +1.5
2,664,451 - -0.5
2,664,451 - -0.4
2,664,454 + +0.2
2,664,454 + -2.3
2,664,454 + -0.3
2,664,454 + +0.8
2,664,455 - -0.5
2,664,455 - +0.1
2,664,455 - -0.5
2,664,455 - -0.7
2,664,455 - -0.5
2,664,458 + +0.5
2,664,459 - +0.3
2,664,459 - +0.2
2,664,459 - +0.4
2,664,459 - +1.3
2,664,459 - -0.3
2,664,464 - +0.0
2,664,464 - +0.7
2,664,464 - +0.8
2,664,464 - +0.1
2,664,490 + -0.6
2,664,490 + -0.2
2,664,519 + -1.1
2,664,545 + -0.5
2,664,545 + +0.1
2,664,545 + +1.3
2,664,546 - -0.2
2,664,546 - -0.3
2,664,546 - -0.6
2,664,546 - +0.3
2,664,569 + ECD_02551 0.10 +0.6
2,664,675 - ECD_02551 0.20 -0.1
2,664,678 + ECD_02551 0.20 -0.2
2,664,678 + ECD_02551 0.20 -1.3

Or see this region's nucleotide sequence