Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02547 and ECD_02548 are separated by 127 nucleotides ECD_02548 and ECD_02549 are separated by 68 nucleotides ECD_02549 and ECD_02550 are separated by 79 nucleotides ECD_02550 and ECD_02551 are separated by 144 nucleotides
ECD_02547: ECD_02547 - alanyl-tRNA synthetase, at 2,659,347 to 2,661,977
_02547
ECD_02548: ECD_02548 - regulatory protein for RecA, at 2,662,105 to 2,662,605
_02548
ECD_02549: ECD_02549 - DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor, at 2,662,674 to 2,663,735
_02549
ECD_02550: ECD_02550 - nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase, at 2,663,815 to 2,664,312
_02550
ECD_02551: ECD_02551 - membrane-bound lytic murein transglycosylase B, at 2,664,457 to 2,665,542
_02551
Position (kb)
2662
2663
2664 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2662.046 kb on - strand at 2662.046 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.063 kb on - strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.093 kb on + strand at 2662.094 kb on - strand at 2662.098 kb on + strand at 2662.161 kb on - strand, within ECD_02548 at 2662.305 kb on + strand, within ECD_02548 at 2662.333 kb on - strand, within ECD_02548 at 2662.403 kb on + strand, within ECD_02548 at 2662.404 kb on - strand, within ECD_02548 at 2662.440 kb on - strand, within ECD_02548 at 2662.485 kb on + strand, within ECD_02548 at 2662.503 kb on + strand, within ECD_02548 at 2662.574 kb on + strand at 2662.575 kb on - strand at 2662.575 kb on - strand at 2662.611 kb on - strand at 2662.616 kb on + strand at 2662.616 kb on + strand at 2662.616 kb on + strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.617 kb on - strand at 2662.623 kb on + strand at 2662.624 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.656 kb on - strand at 2662.659 kb on + strand at 2662.659 kb on + strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.660 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.717 kb on - strand at 2662.800 kb on - strand, within ECD_02549 at 2662.800 kb on - strand, within ECD_02549 at 2662.856 kb on - strand, within ECD_02549 at 2662.856 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.862 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.897 kb on - strand, within ECD_02549 at 2662.922 kb on - strand, within ECD_02549 at 2662.922 kb on - strand, within ECD_02549 at 2662.932 kb on - strand, within ECD_02549 at 2662.932 kb on - strand, within ECD_02549 at 2663.081 kb on - strand, within ECD_02549 at 2663.081 kb on - strand, within ECD_02549 at 2663.145 kb on - strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.225 kb on + strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.226 kb on - strand, within ECD_02549 at 2663.319 kb on + strand, within ECD_02549 at 2663.320 kb on - strand, within ECD_02549 at 2663.320 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.418 kb on - strand, within ECD_02549 at 2663.425 kb on + strand, within ECD_02549 at 2663.425 kb on + strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.426 kb on - strand, within ECD_02549 at 2663.471 kb on + strand, within ECD_02549 at 2663.471 kb on + strand, within ECD_02549 at 2663.519 kb on + strand, within ECD_02549 at 2663.667 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.775 kb on - strand at 2663.794 kb on - strand at 2663.795 kb on + strand at 2663.800 kb on + strand at 2663.801 kb on - strand at 2663.809 kb on - strand at 2663.809 kb on - strand at 2663.827 kb on + strand at 2663.827 kb on + strand at 2663.828 kb on - strand at 2663.858 kb on + strand at 2663.858 kb on + strand at 2663.859 kb on - strand at 2663.859 kb on - strand at 2663.865 kb on + strand, within ECD_02550 at 2664.000 kb on + strand, within ECD_02550 at 2664.006 kb on + strand, within ECD_02550 at 2664.006 kb on + strand, within ECD_02550 at 2664.006 kb on + strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.007 kb on - strand, within ECD_02550 at 2664.009 kb on + strand, within ECD_02550 at 2664.009 kb on + strand, within ECD_02550 at 2664.009 kb on + strand, within ECD_02550 at 2664.009 kb on + strand, within ECD_02550 at 2664.009 kb on + strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.010 kb on - strand, within ECD_02550 at 2664.021 kb on - strand, within ECD_02550 at 2664.112 kb on + strand, within ECD_02550 at 2664.146 kb on + strand, within ECD_02550 at 2664.146 kb on + strand, within ECD_02550 at 2664.146 kb on + strand, within ECD_02550 at 2664.146 kb on + strand, within ECD_02550 at 2664.146 kb on + strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.147 kb on - strand, within ECD_02550 at 2664.181 kb on - strand, within ECD_02550 at 2664.190 kb on - strand, within ECD_02550 at 2664.223 kb on - strand, within ECD_02550 at 2664.223 kb on - strand, within ECD_02550 at 2664.241 kb on + strand, within ECD_02550 at 2664.286 kb on + strand at 2664.286 kb on + strand at 2664.287 kb on - strand at 2664.287 kb on - strand at 2664.287 kb on - strand at 2664.337 kb on + strand at 2664.337 kb on + strand at 2664.338 kb on - strand at 2664.351 kb on + strand at 2664.351 kb on + strand at 2664.392 kb on - strand at 2664.420 kb on - strand at 2664.451 kb on - strand at 2664.451 kb on - strand at 2664.454 kb on + strand at 2664.454 kb on + strand at 2664.454 kb on + strand at 2664.454 kb on + strand at 2664.455 kb on - strand at 2664.455 kb on - strand at 2664.455 kb on - strand at 2664.455 kb on - strand at 2664.455 kb on - strand at 2664.458 kb on + strand at 2664.459 kb on - strand at 2664.459 kb on - strand at 2664.459 kb on - strand at 2664.459 kb on - strand at 2664.459 kb on - strand at 2664.464 kb on - strand at 2664.464 kb on - strand at 2664.464 kb on - strand at 2664.464 kb on - strand at 2664.490 kb on + strand at 2664.490 kb on + strand at 2664.519 kb on + strand at 2664.545 kb on + strand at 2664.545 kb on + strand at 2664.545 kb on + strand at 2664.546 kb on - strand at 2664.546 kb on - strand at 2664.546 kb on - strand at 2664.546 kb on - strand at 2664.569 kb on + strand, within ECD_02551 at 2664.675 kb on - strand, within ECD_02551 at 2664.678 kb on + strand, within ECD_02551 at 2664.678 kb on + strand, within ECD_02551
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,662,046 - -0.3 2,662,046 - +0.6 2,662,063 - -0.8 2,662,063 - +0.7 2,662,063 - -0.4 2,662,063 - -0.4 2,662,063 - -1.5 2,662,063 - -0.2 2,662,063 - -0.4 2,662,093 + +1.0 2,662,093 + -2.3 2,662,093 + -1.9 2,662,093 + +0.1 2,662,093 + -0.2 2,662,093 + +0.3 2,662,094 - -0.2 2,662,098 + +0.1 2,662,161 - ECD_02548 0.11 -0.2 2,662,305 + ECD_02548 0.40 +1.6 2,662,333 - ECD_02548 0.46 +0.5 2,662,403 + ECD_02548 0.59 -0.3 2,662,404 - ECD_02548 0.60 +0.5 2,662,440 - ECD_02548 0.67 +1.2 2,662,485 + ECD_02548 0.76 -1.8 2,662,503 + ECD_02548 0.79 -1.3 2,662,574 + -0.8 2,662,575 - -0.6 2,662,575 - -1.2 2,662,611 - -0.2 2,662,616 + -0.3 2,662,616 + +1.3 2,662,616 + +0.9 2,662,617 - -1.0 2,662,617 - -0.7 2,662,617 - -0.6 2,662,617 - +0.0 2,662,617 - +1.0 2,662,623 + -0.0 2,662,624 - -0.4 2,662,656 - +0.1 2,662,656 - +0.8 2,662,656 - -0.3 2,662,656 - -1.5 2,662,659 + +1.2 2,662,659 + +0.2 2,662,660 - -0.7 2,662,660 - -0.3 2,662,660 - -0.5 2,662,660 - -0.3 2,662,660 - -0.3 2,662,717 - -0.1 2,662,717 - +0.5 2,662,717 - -0.0 2,662,717 - -0.0 2,662,800 - ECD_02549 0.12 +1.2 2,662,800 - ECD_02549 0.12 -1.2 2,662,856 - ECD_02549 0.17 -1.2 2,662,856 - ECD_02549 0.17 -0.0 2,662,862 - ECD_02549 0.18 -2.1 2,662,862 - ECD_02549 0.18 -0.6 2,662,862 - ECD_02549 0.18 +0.8 2,662,862 - ECD_02549 0.18 -0.9 2,662,897 - ECD_02549 0.21 +0.3 2,662,897 - ECD_02549 0.21 -2.4 2,662,897 - ECD_02549 0.21 -1.1 2,662,922 - ECD_02549 0.23 -0.3 2,662,922 - ECD_02549 0.23 -0.7 2,662,932 - ECD_02549 0.24 -1.0 2,662,932 - ECD_02549 0.24 -1.2 2,663,081 - ECD_02549 0.38 -1.8 2,663,081 - ECD_02549 0.38 -0.7 2,663,145 - ECD_02549 0.44 +0.8 2,663,225 + ECD_02549 0.52 -0.2 2,663,225 + ECD_02549 0.52 -1.0 2,663,225 + ECD_02549 0.52 -0.3 2,663,225 + ECD_02549 0.52 -0.2 2,663,225 + ECD_02549 0.52 -1.2 2,663,225 + ECD_02549 0.52 -0.0 2,663,226 - ECD_02549 0.52 +1.0 2,663,226 - ECD_02549 0.52 -1.0 2,663,226 - ECD_02549 0.52 -1.7 2,663,226 - ECD_02549 0.52 -1.9 2,663,226 - ECD_02549 0.52 +1.2 2,663,226 - ECD_02549 0.52 +0.6 2,663,226 - ECD_02549 0.52 +1.8 2,663,226 - ECD_02549 0.52 -1.1 2,663,226 - ECD_02549 0.52 -0.7 2,663,226 - ECD_02549 0.52 -0.4 2,663,226 - ECD_02549 0.52 +1.6 2,663,226 - ECD_02549 0.52 +0.7 2,663,226 - ECD_02549 0.52 -0.5 2,663,319 + ECD_02549 0.61 -0.7 2,663,320 - ECD_02549 0.61 -0.0 2,663,320 - ECD_02549 0.61 -0.4 2,663,418 - ECD_02549 0.70 -0.4 2,663,418 - ECD_02549 0.70 -1.2 2,663,418 - ECD_02549 0.70 -0.2 2,663,418 - ECD_02549 0.70 -0.2 2,663,418 - ECD_02549 0.70 -0.2 2,663,425 + ECD_02549 0.71 -1.4 2,663,425 + ECD_02549 0.71 -0.0 2,663,426 - ECD_02549 0.71 -2.1 2,663,426 - ECD_02549 0.71 -0.4 2,663,426 - ECD_02549 0.71 -1.8 2,663,426 - ECD_02549 0.71 -1.2 2,663,426 - ECD_02549 0.71 -0.4 2,663,426 - ECD_02549 0.71 -0.7 2,663,426 - ECD_02549 0.71 -1.3 2,663,426 - ECD_02549 0.71 -0.5 2,663,426 - ECD_02549 0.71 -1.7 2,663,426 - ECD_02549 0.71 -1.3 2,663,426 - ECD_02549 0.71 -2.3 2,663,471 + ECD_02549 0.75 -1.3 2,663,471 + ECD_02549 0.75 -0.4 2,663,519 + ECD_02549 0.80 -1.3 2,663,667 - -0.7 2,663,775 - -1.4 2,663,775 - -2.2 2,663,775 - +0.4 2,663,775 - +0.6 2,663,775 - +1.6 2,663,775 - +0.4 2,663,775 - -0.4 2,663,794 - -0.6 2,663,795 + -0.2 2,663,800 + -1.5 2,663,801 - +0.2 2,663,809 - -0.1 2,663,809 - +0.6 2,663,827 + +0.1 2,663,827 + -1.6 2,663,828 - -0.5 2,663,858 + -0.8 2,663,858 + +0.1 2,663,859 - -0.1 2,663,859 - -0.1 2,663,865 + ECD_02550 0.10 +0.1 2,664,000 + ECD_02550 0.37 -0.8 2,664,006 + ECD_02550 0.38 -1.4 2,664,006 + ECD_02550 0.38 +0.9 2,664,006 + ECD_02550 0.38 -0.1 2,664,007 - ECD_02550 0.39 +0.6 2,664,007 - ECD_02550 0.39 -0.3 2,664,007 - ECD_02550 0.39 -1.0 2,664,007 - ECD_02550 0.39 +0.3 2,664,007 - ECD_02550 0.39 +0.4 2,664,007 - ECD_02550 0.39 -0.9 2,664,007 - ECD_02550 0.39 -0.1 2,664,009 + ECD_02550 0.39 -0.5 2,664,009 + ECD_02550 0.39 -1.1 2,664,009 + ECD_02550 0.39 +0.4 2,664,009 + ECD_02550 0.39 -1.9 2,664,009 + ECD_02550 0.39 -0.0 2,664,010 - ECD_02550 0.39 -0.0 2,664,010 - ECD_02550 0.39 -0.8 2,664,010 - ECD_02550 0.39 -0.1 2,664,010 - ECD_02550 0.39 -1.8 2,664,010 - ECD_02550 0.39 +0.9 2,664,010 - ECD_02550 0.39 +0.6 2,664,010 - ECD_02550 0.39 -0.2 2,664,010 - ECD_02550 0.39 +0.3 2,664,010 - ECD_02550 0.39 -0.2 2,664,010 - ECD_02550 0.39 +0.6 2,664,021 - ECD_02550 0.41 -0.8 2,664,112 + ECD_02550 0.60 -1.1 2,664,146 + ECD_02550 0.66 -2.4 2,664,146 + ECD_02550 0.66 -0.1 2,664,146 + ECD_02550 0.66 -0.7 2,664,146 + ECD_02550 0.66 -0.8 2,664,146 + ECD_02550 0.66 -2.8 2,664,147 - ECD_02550 0.67 +0.4 2,664,147 - ECD_02550 0.67 -0.0 2,664,147 - ECD_02550 0.67 +1.2 2,664,147 - ECD_02550 0.67 +1.3 2,664,147 - ECD_02550 0.67 +0.3 2,664,147 - ECD_02550 0.67 +1.0 2,664,147 - ECD_02550 0.67 +0.2 2,664,147 - ECD_02550 0.67 +0.4 2,664,147 - ECD_02550 0.67 +0.4 2,664,147 - ECD_02550 0.67 +0.4 2,664,181 - ECD_02550 0.73 +0.6 2,664,190 - ECD_02550 0.75 +0.2 2,664,223 - ECD_02550 0.82 -0.2 2,664,223 - ECD_02550 0.82 +0.2 2,664,241 + ECD_02550 0.86 -1.0 2,664,286 + -1.9 2,664,286 + -0.4 2,664,287 - +0.3 2,664,287 - +0.2 2,664,287 - +0.1 2,664,337 + -0.2 2,664,337 + +0.4 2,664,338 - +0.8 2,664,351 + -0.1 2,664,351 + +0.7 2,664,392 - +0.4 2,664,420 - +1.5 2,664,451 - -0.5 2,664,451 - -0.4 2,664,454 + +0.2 2,664,454 + -2.3 2,664,454 + -0.3 2,664,454 + +0.8 2,664,455 - -0.5 2,664,455 - +0.1 2,664,455 - -0.5 2,664,455 - -0.7 2,664,455 - -0.5 2,664,458 + +0.5 2,664,459 - +0.3 2,664,459 - +0.2 2,664,459 - +0.4 2,664,459 - +1.3 2,664,459 - -0.3 2,664,464 - +0.0 2,664,464 - +0.7 2,664,464 - +0.8 2,664,464 - +0.1 2,664,490 + -0.6 2,664,490 + -0.2 2,664,519 + -1.1 2,664,545 + -0.5 2,664,545 + +0.1 2,664,545 + +1.3 2,664,546 - -0.2 2,664,546 - -0.3 2,664,546 - -0.6 2,664,546 - +0.3 2,664,569 + ECD_02551 0.10 +0.6 2,664,675 - ECD_02551 0.20 -0.1 2,664,678 + ECD_02551 0.20 -0.2 2,664,678 + ECD_02551 0.20 -1.3
Or see this region's nucleotide sequence