Strain Fitness in Escherichia coli BL21 around ECD_02463

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02462 and ECD_02463 are separated by 15 nucleotidesECD_02463 and ECD_02464 are separated by 197 nucleotidesECD_02464 and ECD_02465 overlap by 4 nucleotides ECD_02462: ECD_02462 - leader peptidase (signal peptidase I), at 2,570,935 to 2,571,909 _02462 ECD_02463: ECD_02463 - back-translocating elongation factor EF4, GTPase, at 2,571,925 to 2,573,724 _02463 ECD_02464: ECD_02464 - SoxR iron-sulfur cluster reduction factor component, at 2,573,922 to 2,574,401 _02464 ECD_02465: ECD_02465 - anti-sigma E factor, binds RseA, at 2,574,398 to 2,575,354 _02465 Position (kb) 2571 2572 2573 2574Strain fitness (log2 ratio) -2 -1 0 1at 2570.934 kb on - strandat 2570.934 kb on - strandat 2572.065 kb on - strandat 2572.087 kb on - strandat 2572.268 kb on - strand, within ECD_02463at 2572.268 kb on - strand, within ECD_02463at 2572.271 kb on - strand, within ECD_02463at 2572.317 kb on - strand, within ECD_02463at 2572.543 kb on - strand, within ECD_02463at 2572.578 kb on - strand, within ECD_02463at 2572.582 kb on - strand, within ECD_02463at 2572.616 kb on - strand, within ECD_02463at 2572.749 kb on - strand, within ECD_02463at 2572.749 kb on - strand, within ECD_02463at 2572.961 kb on - strand, within ECD_02463at 2573.278 kb on - strand, within ECD_02463at 2573.278 kb on - strand, within ECD_02463at 2573.278 kb on - strand, within ECD_02463at 2573.656 kb on - strandat 2573.696 kb on - strandat 2573.710 kb on - strandat 2573.730 kb on - strandat 2573.736 kb on - strandat 2573.820 kb on + strandat 2573.821 kb on - strandat 2573.825 kb on + strandat 2573.852 kb on + strandat 2573.852 kb on + strandat 2574.023 kb on + strand, within ECD_02464at 2574.032 kb on - strand, within ECD_02464at 2574.081 kb on + strand, within ECD_02464at 2574.082 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.156 kb on - strand, within ECD_02464at 2574.158 kb on - strand, within ECD_02464at 2574.177 kb on - strand, within ECD_02464at 2574.177 kb on - strand, within ECD_02464at 2574.255 kb on - strand, within ECD_02464at 2574.255 kb on - strand, within ECD_02464at 2574.278 kb on + strand, within ECD_02464at 2574.419 kb on - strandat 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.500 kb on - strand, within ECD_02465at 2574.595 kb on - strand, within ECD_02465at 2574.662 kb on - strand, within ECD_02465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
2,570,934 - -0.8
2,570,934 - -0.2
2,572,065 - +0.3
2,572,087 - -1.9
2,572,268 - ECD_02463 0.19 +0.3
2,572,268 - ECD_02463 0.19 -0.5
2,572,271 - ECD_02463 0.19 +0.3
2,572,317 - ECD_02463 0.22 +0.1
2,572,543 - ECD_02463 0.34 -2.6
2,572,578 - ECD_02463 0.36 +0.1
2,572,582 - ECD_02463 0.36 -1.1
2,572,616 - ECD_02463 0.38 -1.2
2,572,749 - ECD_02463 0.46 -0.2
2,572,749 - ECD_02463 0.46 -0.3
2,572,961 - ECD_02463 0.58 -1.2
2,573,278 - ECD_02463 0.75 +0.5
2,573,278 - ECD_02463 0.75 +0.4
2,573,278 - ECD_02463 0.75 -0.5
2,573,656 - -0.7
2,573,696 - -0.0
2,573,710 - -0.7
2,573,730 - -0.3
2,573,736 - -0.1
2,573,820 + +1.6
2,573,821 - -0.8
2,573,825 + -0.7
2,573,852 + -0.6
2,573,852 + -0.9
2,574,023 + ECD_02464 0.21 +0.2
2,574,032 - ECD_02464 0.23 +0.3
2,574,081 + ECD_02464 0.33 -0.1
2,574,082 - ECD_02464 0.33 +0.1
2,574,156 - ECD_02464 0.49 -0.1
2,574,156 - ECD_02464 0.49 +0.3
2,574,156 - ECD_02464 0.49 -0.4
2,574,158 - ECD_02464 0.49 -0.3
2,574,177 - ECD_02464 0.53 -2.1
2,574,177 - ECD_02464 0.53 -1.2
2,574,255 - ECD_02464 0.69 -0.2
2,574,255 - ECD_02464 0.69 +0.4
2,574,278 + ECD_02464 0.74 -0.0
2,574,419 - -0.2
2,574,500 - ECD_02465 0.11 -0.6
2,574,500 - ECD_02465 0.11 -0.7
2,574,500 - ECD_02465 0.11 +0.7
2,574,500 - ECD_02465 0.11 -0.4
2,574,500 - ECD_02465 0.11 -1.4
2,574,595 - ECD_02465 0.21 -0.9
2,574,662 - ECD_02465 0.28 -0.1

Or see this region's nucleotide sequence