Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02462 and ECD_02463 are separated by 15 nucleotides ECD_02463 and ECD_02464 are separated by 197 nucleotides ECD_02464 and ECD_02465 overlap by 4 nucleotides
ECD_02462: ECD_02462 - leader peptidase (signal peptidase I), at 2,570,935 to 2,571,909
_02462
ECD_02463: ECD_02463 - back-translocating elongation factor EF4, GTPase, at 2,571,925 to 2,573,724
_02463
ECD_02464: ECD_02464 - SoxR iron-sulfur cluster reduction factor component, at 2,573,922 to 2,574,401
_02464
ECD_02465: ECD_02465 - anti-sigma E factor, binds RseA, at 2,574,398 to 2,575,354
_02465
Position (kb)
2571
2572
2573
2574 Strain fitness (log2 ratio)
-2
-1
0
1 at 2570.934 kb on - strand at 2570.934 kb on - strand at 2572.065 kb on - strand at 2572.087 kb on - strand at 2572.268 kb on - strand, within ECD_02463 at 2572.268 kb on - strand, within ECD_02463 at 2572.271 kb on - strand, within ECD_02463 at 2572.317 kb on - strand, within ECD_02463 at 2572.543 kb on - strand, within ECD_02463 at 2572.578 kb on - strand, within ECD_02463 at 2572.582 kb on - strand, within ECD_02463 at 2572.616 kb on - strand, within ECD_02463 at 2572.749 kb on - strand, within ECD_02463 at 2572.749 kb on - strand, within ECD_02463 at 2572.961 kb on - strand, within ECD_02463 at 2573.278 kb on - strand, within ECD_02463 at 2573.278 kb on - strand, within ECD_02463 at 2573.278 kb on - strand, within ECD_02463 at 2573.656 kb on - strand at 2573.696 kb on - strand at 2573.710 kb on - strand at 2573.730 kb on - strand at 2573.736 kb on - strand at 2573.820 kb on + strand at 2573.821 kb on - strand at 2573.825 kb on + strand at 2573.852 kb on + strand at 2573.852 kb on + strand at 2574.023 kb on + strand, within ECD_02464 at 2574.032 kb on - strand, within ECD_02464 at 2574.081 kb on + strand, within ECD_02464 at 2574.082 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.156 kb on - strand, within ECD_02464 at 2574.158 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.177 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.255 kb on - strand, within ECD_02464 at 2574.278 kb on + strand, within ECD_02464 at 2574.419 kb on - strand at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.500 kb on - strand, within ECD_02465 at 2574.595 kb on - strand, within ECD_02465 at 2574.662 kb on - strand, within ECD_02465
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,570,934 - -0.8 2,570,934 - -0.2 2,572,065 - +0.3 2,572,087 - -1.9 2,572,268 - ECD_02463 0.19 +0.3 2,572,268 - ECD_02463 0.19 -0.5 2,572,271 - ECD_02463 0.19 +0.3 2,572,317 - ECD_02463 0.22 +0.1 2,572,543 - ECD_02463 0.34 -2.6 2,572,578 - ECD_02463 0.36 +0.1 2,572,582 - ECD_02463 0.36 -1.1 2,572,616 - ECD_02463 0.38 -1.2 2,572,749 - ECD_02463 0.46 -0.2 2,572,749 - ECD_02463 0.46 -0.3 2,572,961 - ECD_02463 0.58 -1.2 2,573,278 - ECD_02463 0.75 +0.5 2,573,278 - ECD_02463 0.75 +0.4 2,573,278 - ECD_02463 0.75 -0.5 2,573,656 - -0.7 2,573,696 - -0.0 2,573,710 - -0.7 2,573,730 - -0.3 2,573,736 - -0.1 2,573,820 + +1.6 2,573,821 - -0.8 2,573,825 + -0.7 2,573,852 + -0.6 2,573,852 + -0.9 2,574,023 + ECD_02464 0.21 +0.2 2,574,032 - ECD_02464 0.23 +0.3 2,574,081 + ECD_02464 0.33 -0.1 2,574,082 - ECD_02464 0.33 +0.1 2,574,156 - ECD_02464 0.49 -0.1 2,574,156 - ECD_02464 0.49 +0.3 2,574,156 - ECD_02464 0.49 -0.4 2,574,158 - ECD_02464 0.49 -0.3 2,574,177 - ECD_02464 0.53 -2.1 2,574,177 - ECD_02464 0.53 -1.2 2,574,255 - ECD_02464 0.69 -0.2 2,574,255 - ECD_02464 0.69 +0.4 2,574,278 + ECD_02464 0.74 -0.0 2,574,419 - -0.2 2,574,500 - ECD_02465 0.11 -0.6 2,574,500 - ECD_02465 0.11 -0.7 2,574,500 - ECD_02465 0.11 +0.7 2,574,500 - ECD_02465 0.11 -0.4 2,574,500 - ECD_02465 0.11 -1.4 2,574,595 - ECD_02465 0.21 -0.9 2,574,662 - ECD_02465 0.28 -0.1
Or see this region's nucleotide sequence