Strain Fitness in Escherichia coli BL21 around ECD_02210

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02209 and ECD_02210 overlap by 4 nucleotidesECD_02210 and ECD_02211 are separated by 2 nucleotides ECD_02209: ECD_02209 - NADH:ubiquinone oxidoreductase, chain F, at 2,287,470 to 2,288,807 _02209 ECD_02210: ECD_02210 - NADH:ubiquinone oxidoreductase, chain E, at 2,288,804 to 2,289,304 _02210 ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109 _02211 Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -3 -2 -1 0 1at 2287.967 kb on + strand, within ECD_02209at 2288.082 kb on - strand, within ECD_02209at 2288.082 kb on - strand, within ECD_02209at 2288.223 kb on - strand, within ECD_02209at 2288.399 kb on + strand, within ECD_02209at 2288.399 kb on + strand, within ECD_02209at 2288.402 kb on - strand, within ECD_02209at 2288.402 kb on - strand, within ECD_02209at 2288.420 kb on + strand, within ECD_02209at 2288.421 kb on - strand, within ECD_02209at 2288.422 kb on + strand, within ECD_02209at 2288.423 kb on - strand, within ECD_02209at 2288.423 kb on - strand, within ECD_02209at 2288.431 kb on + strand, within ECD_02209at 2288.512 kb on + strand, within ECD_02209at 2288.512 kb on + strand, within ECD_02209at 2288.541 kb on - strand, within ECD_02209at 2288.691 kb on - strandat 2288.809 kb on + strandat 2288.810 kb on - strandat 2288.811 kb on + strandat 2288.926 kb on + strand, within ECD_02210at 2288.927 kb on - strand, within ECD_02210at 2289.011 kb on - strand, within ECD_02210at 2289.078 kb on + strand, within ECD_02210at 2289.079 kb on - strand, within ECD_02210at 2289.079 kb on - strand, within ECD_02210at 2289.116 kb on - strand, within ECD_02210at 2289.220 kb on - strand, within ECD_02210at 2289.304 kb on + strandat 2289.305 kb on - strandat 2289.305 kb on - strandat 2289.305 kb on - strandat 2289.328 kb on - strandat 2289.339 kb on + strandat 2289.470 kb on + strandat 2289.474 kb on - strandat 2289.474 kb on - strandat 2289.474 kb on - strandat 2289.577 kb on - strand, within ECD_02211at 2289.577 kb on - strand, within ECD_02211at 2289.720 kb on - strand, within ECD_02211at 2289.780 kb on - strand, within ECD_02211at 2290.071 kb on - strand, within ECD_02211at 2290.089 kb on + strand, within ECD_02211at 2290.132 kb on - strand, within ECD_02211at 2290.132 kb on - strand, within ECD_02211at 2290.144 kb on - strand, within ECD_02211at 2290.145 kb on + strand, within ECD_02211at 2290.250 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.298 kb on + strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211at 2290.299 kb on - strand, within ECD_02211

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,287,967 + ECD_02209 0.37 -1.5
2,288,082 - ECD_02209 0.46 -2.2
2,288,082 - ECD_02209 0.46 -0.6
2,288,223 - ECD_02209 0.56 -1.2
2,288,399 + ECD_02209 0.69 -0.8
2,288,399 + ECD_02209 0.69 -0.4
2,288,402 - ECD_02209 0.70 +0.2
2,288,402 - ECD_02209 0.70 -1.3
2,288,420 + ECD_02209 0.71 +1.0
2,288,421 - ECD_02209 0.71 -1.7
2,288,422 + ECD_02209 0.71 -0.4
2,288,423 - ECD_02209 0.71 -0.2
2,288,423 - ECD_02209 0.71 -1.2
2,288,431 + ECD_02209 0.72 -0.3
2,288,512 + ECD_02209 0.78 -1.8
2,288,512 + ECD_02209 0.78 -2.2
2,288,541 - ECD_02209 0.80 -1.9
2,288,691 - -0.8
2,288,809 + -1.2
2,288,810 - -2.3
2,288,811 + +0.1
2,288,926 + ECD_02210 0.24 +0.2
2,288,927 - ECD_02210 0.25 -0.7
2,289,011 - ECD_02210 0.41 -2.8
2,289,078 + ECD_02210 0.55 -0.4
2,289,079 - ECD_02210 0.55 -1.6
2,289,079 - ECD_02210 0.55 -1.1
2,289,116 - ECD_02210 0.62 -1.7
2,289,220 - ECD_02210 0.83 -0.6
2,289,304 + -3.1
2,289,305 - -2.8
2,289,305 - -1.0
2,289,305 - -0.5
2,289,328 - -2.7
2,289,339 + -2.4
2,289,470 + -1.1
2,289,474 - -2.2
2,289,474 - -0.0
2,289,474 - -2.1
2,289,577 - ECD_02211 0.15 -1.4
2,289,577 - ECD_02211 0.15 -2.0
2,289,720 - ECD_02211 0.23 -1.7
2,289,780 - ECD_02211 0.26 -0.9
2,290,071 - ECD_02211 0.42 -1.3
2,290,089 + ECD_02211 0.43 -1.1
2,290,132 - ECD_02211 0.46 -1.1
2,290,132 - ECD_02211 0.46 -1.7
2,290,144 - ECD_02211 0.46 -2.1
2,290,145 + ECD_02211 0.46 -0.2
2,290,250 + ECD_02211 0.52 +0.1
2,290,298 + ECD_02211 0.55 +0.8
2,290,298 + ECD_02211 0.55 -0.0
2,290,298 + ECD_02211 0.55 -0.9
2,290,299 - ECD_02211 0.55 -0.4
2,290,299 - ECD_02211 0.55 +0.6

Or see this region's nucleotide sequence