Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02209 and ECD_02210 overlap by 4 nucleotides ECD_02210 and ECD_02211 are separated by 2 nucleotides
ECD_02209: ECD_02209 - NADH:ubiquinone oxidoreductase, chain F, at 2,287,470 to 2,288,807
_02209
ECD_02210: ECD_02210 - NADH:ubiquinone oxidoreductase, chain E, at 2,288,804 to 2,289,304
_02210
ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109
_02211
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2287.967 kb on + strand, within ECD_02209 at 2288.082 kb on - strand, within ECD_02209 at 2288.082 kb on - strand, within ECD_02209 at 2288.223 kb on - strand, within ECD_02209 at 2288.399 kb on + strand, within ECD_02209 at 2288.399 kb on + strand, within ECD_02209 at 2288.402 kb on - strand, within ECD_02209 at 2288.402 kb on - strand, within ECD_02209 at 2288.420 kb on + strand, within ECD_02209 at 2288.421 kb on - strand, within ECD_02209 at 2288.422 kb on + strand, within ECD_02209 at 2288.423 kb on - strand, within ECD_02209 at 2288.423 kb on - strand, within ECD_02209 at 2288.431 kb on + strand, within ECD_02209 at 2288.512 kb on + strand, within ECD_02209 at 2288.512 kb on + strand, within ECD_02209 at 2288.541 kb on - strand, within ECD_02209 at 2288.691 kb on - strand at 2288.809 kb on + strand at 2288.810 kb on - strand at 2288.811 kb on + strand at 2288.926 kb on + strand, within ECD_02210 at 2288.927 kb on - strand, within ECD_02210 at 2289.011 kb on - strand, within ECD_02210 at 2289.078 kb on + strand, within ECD_02210 at 2289.079 kb on - strand, within ECD_02210 at 2289.079 kb on - strand, within ECD_02210 at 2289.116 kb on - strand, within ECD_02210 at 2289.220 kb on - strand, within ECD_02210 at 2289.304 kb on + strand at 2289.305 kb on - strand at 2289.305 kb on - strand at 2289.305 kb on - strand at 2289.328 kb on - strand at 2289.339 kb on + strand at 2289.470 kb on + strand at 2289.474 kb on - strand at 2289.474 kb on - strand at 2289.474 kb on - strand at 2289.577 kb on - strand, within ECD_02211 at 2289.577 kb on - strand, within ECD_02211 at 2289.720 kb on - strand, within ECD_02211 at 2289.780 kb on - strand, within ECD_02211 at 2290.071 kb on - strand, within ECD_02211 at 2290.089 kb on + strand, within ECD_02211 at 2290.132 kb on - strand, within ECD_02211 at 2290.132 kb on - strand, within ECD_02211 at 2290.144 kb on - strand, within ECD_02211 at 2290.145 kb on + strand, within ECD_02211 at 2290.250 kb on + strand, within ECD_02211 at 2290.298 kb on + strand, within ECD_02211 at 2290.298 kb on + strand, within ECD_02211 at 2290.298 kb on + strand, within ECD_02211 at 2290.299 kb on - strand, within ECD_02211 at 2290.299 kb on - strand, within ECD_02211
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,287,967 + ECD_02209 0.37 -1.5 2,288,082 - ECD_02209 0.46 -2.2 2,288,082 - ECD_02209 0.46 -0.6 2,288,223 - ECD_02209 0.56 -1.2 2,288,399 + ECD_02209 0.69 -0.8 2,288,399 + ECD_02209 0.69 -0.4 2,288,402 - ECD_02209 0.70 +0.2 2,288,402 - ECD_02209 0.70 -1.3 2,288,420 + ECD_02209 0.71 +1.0 2,288,421 - ECD_02209 0.71 -1.7 2,288,422 + ECD_02209 0.71 -0.4 2,288,423 - ECD_02209 0.71 -0.2 2,288,423 - ECD_02209 0.71 -1.2 2,288,431 + ECD_02209 0.72 -0.3 2,288,512 + ECD_02209 0.78 -1.8 2,288,512 + ECD_02209 0.78 -2.2 2,288,541 - ECD_02209 0.80 -1.9 2,288,691 - -0.8 2,288,809 + -1.2 2,288,810 - -2.3 2,288,811 + +0.1 2,288,926 + ECD_02210 0.24 +0.2 2,288,927 - ECD_02210 0.25 -0.7 2,289,011 - ECD_02210 0.41 -2.8 2,289,078 + ECD_02210 0.55 -0.4 2,289,079 - ECD_02210 0.55 -1.6 2,289,079 - ECD_02210 0.55 -1.1 2,289,116 - ECD_02210 0.62 -1.7 2,289,220 - ECD_02210 0.83 -0.6 2,289,304 + -3.1 2,289,305 - -2.8 2,289,305 - -1.0 2,289,305 - -0.5 2,289,328 - -2.7 2,289,339 + -2.4 2,289,470 + -1.1 2,289,474 - -2.2 2,289,474 - -0.0 2,289,474 - -2.1 2,289,577 - ECD_02211 0.15 -1.4 2,289,577 - ECD_02211 0.15 -2.0 2,289,720 - ECD_02211 0.23 -1.7 2,289,780 - ECD_02211 0.26 -0.9 2,290,071 - ECD_02211 0.42 -1.3 2,290,089 + ECD_02211 0.43 -1.1 2,290,132 - ECD_02211 0.46 -1.1 2,290,132 - ECD_02211 0.46 -1.7 2,290,144 - ECD_02211 0.46 -2.1 2,290,145 + ECD_02211 0.46 -0.2 2,290,250 + ECD_02211 0.52 +0.1 2,290,298 + ECD_02211 0.55 +0.8 2,290,298 + ECD_02211 0.55 -0.0 2,290,298 + ECD_02211 0.55 -0.9 2,290,299 - ECD_02211 0.55 -0.4 2,290,299 - ECD_02211 0.55 +0.6
Or see this region's nucleotide sequence