Strain Fitness in Escherichia coli BL21 around ECD_02206

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02203 and ECD_02204 overlap by 4 nucleotidesECD_02204 and ECD_02205 overlap by 4 nucleotidesECD_02205 and ECD_02206 are separated by 11 nucleotidesECD_02206 and ECD_02207 are separated by 14 nucleotidesECD_02207 and ECD_02208 overlap by 4 nucleotides ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298 _02203 ECD_02204: ECD_02204 - NADH:ubiquinone oxidoreductase, membrane subunit K, at 2,282,295 to 2,282,597 _02204 ECD_02205: ECD_02205 - NADH:ubiquinone oxidoreductase, membrane subunit J, at 2,282,594 to 2,283,148 _02205 ECD_02206: ECD_02206 - NADH:ubiquinone oxidoreductase, chain I, at 2,283,160 to 2,283,702 _02206 ECD_02207: ECD_02207 - NADH:ubiquinone oxidoreductase, membrane subunit H, at 2,283,717 to 2,284,694 _02207 ECD_02208: ECD_02208 - NADH:ubiquinone oxidoreductase, chain G, at 2,284,691 to 2,287,417 _02208 Position (kb) 2283 2284Strain fitness (log2 ratio) -2 -1 0 1at 2282.414 kb on - strand, within ECD_02204at 2282.414 kb on - strand, within ECD_02204at 2282.713 kb on + strand, within ECD_02205at 2282.713 kb on + strand, within ECD_02205at 2282.713 kb on + strand, within ECD_02205at 2282.714 kb on - strand, within ECD_02205at 2282.714 kb on - strand, within ECD_02205at 2282.755 kb on + strand, within ECD_02205at 2282.759 kb on - strand, within ECD_02205at 2282.771 kb on - strand, within ECD_02205at 2283.004 kb on - strand, within ECD_02205at 2283.050 kb on - strand, within ECD_02205at 2283.110 kb on + strandat 2283.131 kb on - strandat 2283.258 kb on + strand, within ECD_02206at 2283.261 kb on - strand, within ECD_02206at 2283.309 kb on - strand, within ECD_02206at 2283.330 kb on - strand, within ECD_02206at 2283.561 kb on + strand, within ECD_02206at 2283.658 kb on - strandat 2283.695 kb on - strandat 2283.709 kb on - strandat 2283.805 kb on - strandat 2283.860 kb on + strand, within ECD_02207at 2283.861 kb on - strand, within ECD_02207at 2283.970 kb on + strand, within ECD_02207at 2283.970 kb on + strand, within ECD_02207at 2284.283 kb on + strand, within ECD_02207at 2284.283 kb on + strand, within ECD_02207at 2284.284 kb on - strand, within ECD_02207at 2284.421 kb on + strand, within ECD_02207at 2284.422 kb on - strand, within ECD_02207at 2284.422 kb on - strand, within ECD_02207at 2284.488 kb on - strand, within ECD_02207

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,282,414 - ECD_02204 0.39 -0.3
2,282,414 - ECD_02204 0.39 -1.9
2,282,713 + ECD_02205 0.21 -0.8
2,282,713 + ECD_02205 0.21 -1.4
2,282,713 + ECD_02205 0.21 -0.8
2,282,714 - ECD_02205 0.22 -0.9
2,282,714 - ECD_02205 0.22 -1.6
2,282,755 + ECD_02205 0.29 -0.3
2,282,759 - ECD_02205 0.30 -1.8
2,282,771 - ECD_02205 0.32 -1.7
2,283,004 - ECD_02205 0.74 -0.4
2,283,050 - ECD_02205 0.82 -2.7
2,283,110 + -0.7
2,283,131 - -1.0
2,283,258 + ECD_02206 0.18 -1.0
2,283,261 - ECD_02206 0.19 -1.0
2,283,309 - ECD_02206 0.27 -1.5
2,283,330 - ECD_02206 0.31 -2.2
2,283,561 + ECD_02206 0.74 -0.9
2,283,658 - -1.6
2,283,695 - -0.1
2,283,709 - -1.8
2,283,805 - -2.0
2,283,860 + ECD_02207 0.15 -0.0
2,283,861 - ECD_02207 0.15 -1.3
2,283,970 + ECD_02207 0.26 -1.5
2,283,970 + ECD_02207 0.26 -1.6
2,284,283 + ECD_02207 0.58 +0.4
2,284,283 + ECD_02207 0.58 -1.3
2,284,284 - ECD_02207 0.58 -1.0
2,284,421 + ECD_02207 0.72 +1.6
2,284,422 - ECD_02207 0.72 -2.0
2,284,422 - ECD_02207 0.72 +0.2
2,284,488 - ECD_02207 0.79 -1.0

Or see this region's nucleotide sequence