Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02203 and ECD_02204 overlap by 4 nucleotides ECD_02204 and ECD_02205 overlap by 4 nucleotides ECD_02205 and ECD_02206 are separated by 11 nucleotides
ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298
_02203
ECD_02204: ECD_02204 - NADH:ubiquinone oxidoreductase, membrane subunit K, at 2,282,295 to 2,282,597
_02204
ECD_02205: ECD_02205 - NADH:ubiquinone oxidoreductase, membrane subunit J, at 2,282,594 to 2,283,148
_02205
ECD_02206: ECD_02206 - NADH:ubiquinone oxidoreductase, chain I, at 2,283,160 to 2,283,702
_02206
Position (kb)
2282
2283 Strain fitness (log2 ratio)
-2
-1
0
1 at 2281.346 kb on + strand, within ECD_02203 at 2281.366 kb on - strand, within ECD_02203 at 2281.734 kb on - strand, within ECD_02203 at 2281.827 kb on - strand, within ECD_02203 at 2281.829 kb on + strand, within ECD_02203 at 2281.881 kb on - strand, within ECD_02203 at 2281.881 kb on - strand, within ECD_02203 at 2281.980 kb on + strand, within ECD_02203 at 2281.982 kb on + strand, within ECD_02203 at 2281.982 kb on + strand, within ECD_02203 at 2281.983 kb on - strand, within ECD_02203 at 2281.983 kb on - strand, within ECD_02203 at 2281.983 kb on - strand, within ECD_02203 at 2281.995 kb on - strand, within ECD_02203 at 2282.067 kb on + strand, within ECD_02203 at 2282.121 kb on - strand at 2282.121 kb on - strand at 2282.414 kb on - strand, within ECD_02204 at 2282.414 kb on - strand, within ECD_02204 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.713 kb on + strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.714 kb on - strand, within ECD_02205 at 2282.755 kb on + strand, within ECD_02205 at 2282.759 kb on - strand, within ECD_02205 at 2282.771 kb on - strand, within ECD_02205 at 2283.004 kb on - strand, within ECD_02205 at 2283.050 kb on - strand, within ECD_02205 at 2283.110 kb on + strand at 2283.131 kb on - strand at 2283.258 kb on + strand, within ECD_02206 at 2283.261 kb on - strand, within ECD_02206 at 2283.309 kb on - strand, within ECD_02206 at 2283.330 kb on - strand, within ECD_02206 at 2283.561 kb on + strand, within ECD_02206
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,281,346 + ECD_02203 0.48 -0.8 2,281,366 - ECD_02203 0.49 -0.8 2,281,734 - ECD_02203 0.69 -0.9 2,281,827 - ECD_02203 0.74 -1.6 2,281,829 + ECD_02203 0.74 -0.5 2,281,881 - ECD_02203 0.77 -0.5 2,281,881 - ECD_02203 0.77 +0.5 2,281,980 + ECD_02203 0.83 -1.0 2,281,982 + ECD_02203 0.83 -1.3 2,281,982 + ECD_02203 0.83 -1.1 2,281,983 - ECD_02203 0.83 -0.7 2,281,983 - ECD_02203 0.83 -1.1 2,281,983 - ECD_02203 0.83 -1.4 2,281,995 - ECD_02203 0.83 -0.1 2,282,067 + ECD_02203 0.87 +0.6 2,282,121 - +0.3 2,282,121 - -0.3 2,282,414 - ECD_02204 0.39 -0.3 2,282,414 - ECD_02204 0.39 -1.9 2,282,713 + ECD_02205 0.21 -0.8 2,282,713 + ECD_02205 0.21 -1.4 2,282,713 + ECD_02205 0.21 -0.8 2,282,714 - ECD_02205 0.22 -0.9 2,282,714 - ECD_02205 0.22 -1.6 2,282,755 + ECD_02205 0.29 -0.3 2,282,759 - ECD_02205 0.30 -1.8 2,282,771 - ECD_02205 0.32 -1.7 2,283,004 - ECD_02205 0.74 -0.4 2,283,050 - ECD_02205 0.82 -2.7 2,283,110 + -0.7 2,283,131 - -1.0 2,283,258 + ECD_02206 0.18 -1.0 2,283,261 - ECD_02206 0.19 -1.0 2,283,309 - ECD_02206 0.27 -1.5 2,283,330 - ECD_02206 0.31 -2.2 2,283,561 + ECD_02206 0.74 -0.9
Or see this region's nucleotide sequence