Strain Fitness in Escherichia coli BL21 around ECD_02203

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02202 and ECD_02203 are separated by 230 nucleotidesECD_02203 and ECD_02204 overlap by 4 nucleotidesECD_02204 and ECD_02205 overlap by 4 nucleotidesECD_02205 and ECD_02206 are separated by 11 nucleotides ECD_02202: ECD_02202 - NADH:ubiquinone oxidoreductase, membrane subunit M, at 2,278,697 to 2,280,226 _02202 ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298 _02203 ECD_02204: ECD_02204 - NADH:ubiquinone oxidoreductase, membrane subunit K, at 2,282,295 to 2,282,597 _02204 ECD_02205: ECD_02205 - NADH:ubiquinone oxidoreductase, membrane subunit J, at 2,282,594 to 2,283,148 _02205 ECD_02206: ECD_02206 - NADH:ubiquinone oxidoreductase, chain I, at 2,283,160 to 2,283,702 _02206 Position (kb) 2280 2281 2282 2283Strain fitness (log2 ratio) -3 -2 -1 0 1at 2279.565 kb on + strand, within ECD_02202at 2279.566 kb on - strand, within ECD_02202at 2279.590 kb on + strand, within ECD_02202at 2279.591 kb on - strand, within ECD_02202at 2279.637 kb on + strand, within ECD_02202at 2279.749 kb on + strand, within ECD_02202at 2279.749 kb on + strand, within ECD_02202at 2279.775 kb on + strand, within ECD_02202at 2279.776 kb on - strand, within ECD_02202at 2279.776 kb on - strand, within ECD_02202at 2279.992 kb on + strand, within ECD_02202at 2279.993 kb on - strand, within ECD_02202at 2280.204 kb on - strandat 2280.207 kb on - strandat 2280.207 kb on - strandat 2280.222 kb on - strandat 2280.226 kb on + strandat 2280.226 kb on + strandat 2280.226 kb on + strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.230 kb on + strandat 2280.230 kb on + strandat 2280.230 kb on + strandat 2280.231 kb on - strandat 2280.231 kb on - strandat 2280.234 kb on + strandat 2280.234 kb on + strandat 2280.235 kb on - strandat 2280.235 kb on - strandat 2280.244 kb on - strandat 2280.245 kb on + strandat 2280.245 kb on + strandat 2280.246 kb on - strandat 2280.249 kb on + strandat 2280.249 kb on + strandat 2280.249 kb on + strandat 2280.312 kb on - strandat 2280.312 kb on - strandat 2280.312 kb on - strandat 2280.315 kb on + strandat 2280.316 kb on - strandat 2280.316 kb on - strandat 2280.316 kb on - strandat 2280.376 kb on + strandat 2280.436 kb on + strandat 2280.438 kb on + strandat 2280.558 kb on + strandat 2280.703 kb on - strand, within ECD_02203at 2280.750 kb on + strand, within ECD_02203at 2280.751 kb on - strand, within ECD_02203at 2281.017 kb on - strand, within ECD_02203at 2281.066 kb on - strand, within ECD_02203at 2281.105 kb on - strand, within ECD_02203at 2281.346 kb on + strand, within ECD_02203at 2281.366 kb on - strand, within ECD_02203at 2281.734 kb on - strand, within ECD_02203at 2281.827 kb on - strand, within ECD_02203at 2281.829 kb on + strand, within ECD_02203at 2281.881 kb on - strand, within ECD_02203at 2281.881 kb on - strand, within ECD_02203at 2281.980 kb on + strand, within ECD_02203at 2281.982 kb on + strand, within ECD_02203at 2281.982 kb on + strand, within ECD_02203at 2281.983 kb on - strand, within ECD_02203at 2281.983 kb on - strand, within ECD_02203at 2281.983 kb on - strand, within ECD_02203at 2281.995 kb on - strand, within ECD_02203at 2282.067 kb on + strand, within ECD_02203at 2282.121 kb on - strandat 2282.121 kb on - strandat 2282.414 kb on - strand, within ECD_02204at 2282.414 kb on - strand, within ECD_02204at 2282.713 kb on + strand, within ECD_02205at 2282.713 kb on + strand, within ECD_02205at 2282.713 kb on + strand, within ECD_02205at 2282.714 kb on - strand, within ECD_02205at 2282.714 kb on - strand, within ECD_02205at 2282.755 kb on + strand, within ECD_02205at 2282.759 kb on - strand, within ECD_02205at 2282.771 kb on - strand, within ECD_02205at 2283.004 kb on - strand, within ECD_02205at 2283.050 kb on - strand, within ECD_02205at 2283.110 kb on + strandat 2283.131 kb on - strandat 2283.258 kb on + strand, within ECD_02206at 2283.261 kb on - strand, within ECD_02206

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,279,565 + ECD_02202 0.57 -1.5
2,279,566 - ECD_02202 0.57 -0.7
2,279,590 + ECD_02202 0.58 -1.7
2,279,591 - ECD_02202 0.58 +0.1
2,279,637 + ECD_02202 0.61 +0.2
2,279,749 + ECD_02202 0.69 +1.1
2,279,749 + ECD_02202 0.69 -2.7
2,279,775 + ECD_02202 0.70 -1.7
2,279,776 - ECD_02202 0.71 -2.0
2,279,776 - ECD_02202 0.71 -1.6
2,279,992 + ECD_02202 0.85 -2.5
2,279,993 - ECD_02202 0.85 -0.3
2,280,204 - -0.5
2,280,207 - -0.8
2,280,207 - -0.5
2,280,222 - +0.0
2,280,226 + -2.3
2,280,226 + -1.8
2,280,226 + -0.7
2,280,227 - -2.7
2,280,227 - -2.0
2,280,227 - -1.7
2,280,227 - -1.8
2,280,227 - -2.3
2,280,230 + -0.3
2,280,230 + -1.2
2,280,230 + +0.1
2,280,231 - -1.0
2,280,231 - -1.2
2,280,234 + -1.0
2,280,234 + -0.5
2,280,235 - -3.5
2,280,235 - -1.3
2,280,244 - -2.3
2,280,245 + -1.5
2,280,245 + -1.5
2,280,246 - -1.1
2,280,249 + -0.9
2,280,249 + -0.6
2,280,249 + -1.3
2,280,312 - -2.4
2,280,312 - -1.1
2,280,312 - -1.3
2,280,315 + -0.5
2,280,316 - -0.9
2,280,316 - -0.7
2,280,316 - -1.3
2,280,376 + +0.5
2,280,436 + -1.8
2,280,438 + -2.2
2,280,558 + +0.1
2,280,703 - ECD_02203 0.13 -0.5
2,280,750 + ECD_02203 0.16 -3.1
2,280,751 - ECD_02203 0.16 -1.7
2,281,017 - ECD_02203 0.30 -1.7
2,281,066 - ECD_02203 0.33 -1.9
2,281,105 - ECD_02203 0.35 -0.8
2,281,346 + ECD_02203 0.48 -0.8
2,281,366 - ECD_02203 0.49 -0.8
2,281,734 - ECD_02203 0.69 -0.9
2,281,827 - ECD_02203 0.74 -1.6
2,281,829 + ECD_02203 0.74 -0.5
2,281,881 - ECD_02203 0.77 -0.5
2,281,881 - ECD_02203 0.77 +0.5
2,281,980 + ECD_02203 0.83 -1.0
2,281,982 + ECD_02203 0.83 -1.3
2,281,982 + ECD_02203 0.83 -1.1
2,281,983 - ECD_02203 0.83 -0.7
2,281,983 - ECD_02203 0.83 -1.1
2,281,983 - ECD_02203 0.83 -1.4
2,281,995 - ECD_02203 0.83 -0.1
2,282,067 + ECD_02203 0.87 +0.6
2,282,121 - +0.3
2,282,121 - -0.3
2,282,414 - ECD_02204 0.39 -0.3
2,282,414 - ECD_02204 0.39 -1.9
2,282,713 + ECD_02205 0.21 -0.8
2,282,713 + ECD_02205 0.21 -1.4
2,282,713 + ECD_02205 0.21 -0.8
2,282,714 - ECD_02205 0.22 -0.9
2,282,714 - ECD_02205 0.22 -1.6
2,282,755 + ECD_02205 0.29 -0.3
2,282,759 - ECD_02205 0.30 -1.8
2,282,771 - ECD_02205 0.32 -1.7
2,283,004 - ECD_02205 0.74 -0.4
2,283,050 - ECD_02205 0.82 -2.7
2,283,110 + -0.7
2,283,131 - -1.0
2,283,258 + ECD_02206 0.18 -1.0
2,283,261 - ECD_02206 0.19 -1.0

Or see this region's nucleotide sequence