Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02201 and ECD_02202 are separated by 6 nucleotides ECD_02202 and ECD_02203 are separated by 230 nucleotides
ECD_02201: ECD_02201 - NADH:ubiquinone oxidoreductase, membrane subunit N, at 2,277,233 to 2,278,690
_02201
ECD_02202: ECD_02202 - NADH:ubiquinone oxidoreductase, membrane subunit M, at 2,278,697 to 2,280,226
_02202
ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298
_02203
Position (kb)
2278
2279
2280
2281 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2277.784 kb on + strand, within ECD_02201 at 2277.784 kb on + strand, within ECD_02201 at 2277.784 kb on + strand, within ECD_02201 at 2277.785 kb on - strand, within ECD_02201 at 2278.000 kb on - strand, within ECD_02201 at 2278.001 kb on + strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.102 kb on + strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.362 kb on - strand, within ECD_02201 at 2278.374 kb on + strand, within ECD_02201 at 2278.375 kb on - strand, within ECD_02201 at 2278.398 kb on + strand, within ECD_02201 at 2278.399 kb on - strand, within ECD_02201 at 2278.451 kb on + strand, within ECD_02201 at 2278.502 kb on - strand, within ECD_02201 at 2278.577 kb on - strand at 2278.682 kb on + strand at 2278.683 kb on - strand at 2278.683 kb on - strand at 2278.708 kb on + strand at 2278.712 kb on - strand at 2278.712 kb on - strand at 2279.236 kb on - strand, within ECD_02202 at 2279.239 kb on + strand, within ECD_02202 at 2279.356 kb on + strand, within ECD_02202 at 2279.357 kb on - strand, within ECD_02202 at 2279.565 kb on + strand, within ECD_02202 at 2279.566 kb on - strand, within ECD_02202 at 2279.590 kb on + strand, within ECD_02202 at 2279.591 kb on - strand, within ECD_02202 at 2279.637 kb on + strand, within ECD_02202 at 2279.749 kb on + strand, within ECD_02202 at 2279.749 kb on + strand, within ECD_02202 at 2279.775 kb on + strand, within ECD_02202 at 2279.776 kb on - strand, within ECD_02202 at 2279.776 kb on - strand, within ECD_02202 at 2279.992 kb on + strand, within ECD_02202 at 2279.993 kb on - strand, within ECD_02202 at 2280.204 kb on - strand at 2280.207 kb on - strand at 2280.207 kb on - strand at 2280.222 kb on - strand at 2280.226 kb on + strand at 2280.226 kb on + strand at 2280.226 kb on + strand at 2280.227 kb on - strand at 2280.227 kb on - strand at 2280.227 kb on - strand at 2280.227 kb on - strand at 2280.227 kb on - strand at 2280.230 kb on + strand at 2280.230 kb on + strand at 2280.230 kb on + strand at 2280.231 kb on - strand at 2280.231 kb on - strand at 2280.234 kb on + strand at 2280.234 kb on + strand at 2280.235 kb on - strand at 2280.235 kb on - strand at 2280.244 kb on - strand at 2280.245 kb on + strand at 2280.245 kb on + strand at 2280.246 kb on - strand at 2280.249 kb on + strand at 2280.249 kb on + strand at 2280.249 kb on + strand at 2280.312 kb on - strand at 2280.312 kb on - strand at 2280.312 kb on - strand at 2280.315 kb on + strand at 2280.316 kb on - strand at 2280.316 kb on - strand at 2280.316 kb on - strand at 2280.376 kb on + strand at 2280.436 kb on + strand at 2280.438 kb on + strand at 2280.558 kb on + strand at 2280.703 kb on - strand, within ECD_02203 at 2280.750 kb on + strand, within ECD_02203 at 2280.751 kb on - strand, within ECD_02203 at 2281.017 kb on - strand, within ECD_02203 at 2281.066 kb on - strand, within ECD_02203 at 2281.105 kb on - strand, within ECD_02203
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,277,784 + ECD_02201 0.38 -1.0 2,277,784 + ECD_02201 0.38 -1.0 2,277,784 + ECD_02201 0.38 -1.8 2,277,785 - ECD_02201 0.38 -1.4 2,278,000 - ECD_02201 0.53 -1.0 2,278,001 + ECD_02201 0.53 -0.0 2,278,002 - ECD_02201 0.53 -2.0 2,278,002 - ECD_02201 0.53 -0.5 2,278,002 - ECD_02201 0.53 -0.3 2,278,002 - ECD_02201 0.53 -2.6 2,278,102 + ECD_02201 0.60 -1.1 2,278,159 - ECD_02201 0.64 -0.5 2,278,159 - ECD_02201 0.64 -1.0 2,278,159 - ECD_02201 0.64 -0.7 2,278,362 - ECD_02201 0.77 +0.0 2,278,374 + ECD_02201 0.78 -0.3 2,278,375 - ECD_02201 0.78 -1.8 2,278,398 + ECD_02201 0.80 -0.8 2,278,399 - ECD_02201 0.80 -1.3 2,278,451 + ECD_02201 0.84 -0.6 2,278,502 - ECD_02201 0.87 -2.5 2,278,577 - -0.8 2,278,682 + -0.6 2,278,683 - -0.8 2,278,683 - -0.0 2,278,708 + -1.2 2,278,712 - -0.7 2,278,712 - -2.4 2,279,236 - ECD_02202 0.35 -0.7 2,279,239 + ECD_02202 0.35 -0.4 2,279,356 + ECD_02202 0.43 -1.8 2,279,357 - ECD_02202 0.43 -0.5 2,279,565 + ECD_02202 0.57 -1.5 2,279,566 - ECD_02202 0.57 -0.7 2,279,590 + ECD_02202 0.58 -1.7 2,279,591 - ECD_02202 0.58 +0.1 2,279,637 + ECD_02202 0.61 +0.2 2,279,749 + ECD_02202 0.69 +1.1 2,279,749 + ECD_02202 0.69 -2.7 2,279,775 + ECD_02202 0.70 -1.7 2,279,776 - ECD_02202 0.71 -2.0 2,279,776 - ECD_02202 0.71 -1.6 2,279,992 + ECD_02202 0.85 -2.5 2,279,993 - ECD_02202 0.85 -0.3 2,280,204 - -0.5 2,280,207 - -0.8 2,280,207 - -0.5 2,280,222 - +0.0 2,280,226 + -2.3 2,280,226 + -1.8 2,280,226 + -0.7 2,280,227 - -2.7 2,280,227 - -2.0 2,280,227 - -1.7 2,280,227 - -1.8 2,280,227 - -2.3 2,280,230 + -0.3 2,280,230 + -1.2 2,280,230 + +0.1 2,280,231 - -1.0 2,280,231 - -1.2 2,280,234 + -1.0 2,280,234 + -0.5 2,280,235 - -3.5 2,280,235 - -1.3 2,280,244 - -2.3 2,280,245 + -1.5 2,280,245 + -1.5 2,280,246 - -1.1 2,280,249 + -0.9 2,280,249 + -0.6 2,280,249 + -1.3 2,280,312 - -2.4 2,280,312 - -1.1 2,280,312 - -1.3 2,280,315 + -0.5 2,280,316 - -0.9 2,280,316 - -0.7 2,280,316 - -1.3 2,280,376 + +0.5 2,280,436 + -1.8 2,280,438 + -2.2 2,280,558 + +0.1 2,280,703 - ECD_02203 0.13 -0.5 2,280,750 + ECD_02203 0.16 -3.1 2,280,751 - ECD_02203 0.16 -1.7 2,281,017 - ECD_02203 0.30 -1.7 2,281,066 - ECD_02203 0.33 -1.9 2,281,105 - ECD_02203 0.35 -0.8
Or see this region's nucleotide sequence