Strain Fitness in Escherichia coli BL21 around ECD_02202

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02201 and ECD_02202 are separated by 6 nucleotidesECD_02202 and ECD_02203 are separated by 230 nucleotides ECD_02201: ECD_02201 - NADH:ubiquinone oxidoreductase, membrane subunit N, at 2,277,233 to 2,278,690 _02201 ECD_02202: ECD_02202 - NADH:ubiquinone oxidoreductase, membrane subunit M, at 2,278,697 to 2,280,226 _02202 ECD_02203: ECD_02203 - NADH:ubiquinone oxidoreductase, membrane subunit L, at 2,280,457 to 2,282,298 _02203 Position (kb) 2278 2279 2280 2281Strain fitness (log2 ratio) -3 -2 -1 0 1at 2277.784 kb on + strand, within ECD_02201at 2277.784 kb on + strand, within ECD_02201at 2277.784 kb on + strand, within ECD_02201at 2277.785 kb on - strand, within ECD_02201at 2278.000 kb on - strand, within ECD_02201at 2278.001 kb on + strand, within ECD_02201at 2278.002 kb on - strand, within ECD_02201at 2278.002 kb on - strand, within ECD_02201at 2278.002 kb on - strand, within ECD_02201at 2278.002 kb on - strand, within ECD_02201at 2278.102 kb on + strand, within ECD_02201at 2278.159 kb on - strand, within ECD_02201at 2278.159 kb on - strand, within ECD_02201at 2278.159 kb on - strand, within ECD_02201at 2278.362 kb on - strand, within ECD_02201at 2278.374 kb on + strand, within ECD_02201at 2278.375 kb on - strand, within ECD_02201at 2278.398 kb on + strand, within ECD_02201at 2278.399 kb on - strand, within ECD_02201at 2278.451 kb on + strand, within ECD_02201at 2278.502 kb on - strand, within ECD_02201at 2278.577 kb on - strandat 2278.682 kb on + strandat 2278.683 kb on - strandat 2278.683 kb on - strandat 2278.708 kb on + strandat 2278.712 kb on - strandat 2278.712 kb on - strandat 2279.236 kb on - strand, within ECD_02202at 2279.239 kb on + strand, within ECD_02202at 2279.356 kb on + strand, within ECD_02202at 2279.357 kb on - strand, within ECD_02202at 2279.565 kb on + strand, within ECD_02202at 2279.566 kb on - strand, within ECD_02202at 2279.590 kb on + strand, within ECD_02202at 2279.591 kb on - strand, within ECD_02202at 2279.637 kb on + strand, within ECD_02202at 2279.749 kb on + strand, within ECD_02202at 2279.749 kb on + strand, within ECD_02202at 2279.775 kb on + strand, within ECD_02202at 2279.776 kb on - strand, within ECD_02202at 2279.776 kb on - strand, within ECD_02202at 2279.992 kb on + strand, within ECD_02202at 2279.993 kb on - strand, within ECD_02202at 2280.204 kb on - strandat 2280.207 kb on - strandat 2280.207 kb on - strandat 2280.222 kb on - strandat 2280.226 kb on + strandat 2280.226 kb on + strandat 2280.226 kb on + strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.227 kb on - strandat 2280.230 kb on + strandat 2280.230 kb on + strandat 2280.230 kb on + strandat 2280.231 kb on - strandat 2280.231 kb on - strandat 2280.234 kb on + strandat 2280.234 kb on + strandat 2280.235 kb on - strandat 2280.235 kb on - strandat 2280.244 kb on - strandat 2280.245 kb on + strandat 2280.245 kb on + strandat 2280.246 kb on - strandat 2280.249 kb on + strandat 2280.249 kb on + strandat 2280.249 kb on + strandat 2280.312 kb on - strandat 2280.312 kb on - strandat 2280.312 kb on - strandat 2280.315 kb on + strandat 2280.316 kb on - strandat 2280.316 kb on - strandat 2280.316 kb on - strandat 2280.376 kb on + strandat 2280.436 kb on + strandat 2280.438 kb on + strandat 2280.558 kb on + strandat 2280.703 kb on - strand, within ECD_02203at 2280.750 kb on + strand, within ECD_02203at 2280.751 kb on - strand, within ECD_02203at 2281.017 kb on - strand, within ECD_02203at 2281.066 kb on - strand, within ECD_02203at 2281.105 kb on - strand, within ECD_02203

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,277,784 + ECD_02201 0.38 -1.0
2,277,784 + ECD_02201 0.38 -1.0
2,277,784 + ECD_02201 0.38 -1.8
2,277,785 - ECD_02201 0.38 -1.4
2,278,000 - ECD_02201 0.53 -1.0
2,278,001 + ECD_02201 0.53 -0.0
2,278,002 - ECD_02201 0.53 -2.0
2,278,002 - ECD_02201 0.53 -0.5
2,278,002 - ECD_02201 0.53 -0.3
2,278,002 - ECD_02201 0.53 -2.6
2,278,102 + ECD_02201 0.60 -1.1
2,278,159 - ECD_02201 0.64 -0.5
2,278,159 - ECD_02201 0.64 -1.0
2,278,159 - ECD_02201 0.64 -0.7
2,278,362 - ECD_02201 0.77 +0.0
2,278,374 + ECD_02201 0.78 -0.3
2,278,375 - ECD_02201 0.78 -1.8
2,278,398 + ECD_02201 0.80 -0.8
2,278,399 - ECD_02201 0.80 -1.3
2,278,451 + ECD_02201 0.84 -0.6
2,278,502 - ECD_02201 0.87 -2.5
2,278,577 - -0.8
2,278,682 + -0.6
2,278,683 - -0.8
2,278,683 - -0.0
2,278,708 + -1.2
2,278,712 - -0.7
2,278,712 - -2.4
2,279,236 - ECD_02202 0.35 -0.7
2,279,239 + ECD_02202 0.35 -0.4
2,279,356 + ECD_02202 0.43 -1.8
2,279,357 - ECD_02202 0.43 -0.5
2,279,565 + ECD_02202 0.57 -1.5
2,279,566 - ECD_02202 0.57 -0.7
2,279,590 + ECD_02202 0.58 -1.7
2,279,591 - ECD_02202 0.58 +0.1
2,279,637 + ECD_02202 0.61 +0.2
2,279,749 + ECD_02202 0.69 +1.1
2,279,749 + ECD_02202 0.69 -2.7
2,279,775 + ECD_02202 0.70 -1.7
2,279,776 - ECD_02202 0.71 -2.0
2,279,776 - ECD_02202 0.71 -1.6
2,279,992 + ECD_02202 0.85 -2.5
2,279,993 - ECD_02202 0.85 -0.3
2,280,204 - -0.5
2,280,207 - -0.8
2,280,207 - -0.5
2,280,222 - +0.0
2,280,226 + -2.3
2,280,226 + -1.8
2,280,226 + -0.7
2,280,227 - -2.7
2,280,227 - -2.0
2,280,227 - -1.7
2,280,227 - -1.8
2,280,227 - -2.3
2,280,230 + -0.3
2,280,230 + -1.2
2,280,230 + +0.1
2,280,231 - -1.0
2,280,231 - -1.2
2,280,234 + -1.0
2,280,234 + -0.5
2,280,235 - -3.5
2,280,235 - -1.3
2,280,244 - -2.3
2,280,245 + -1.5
2,280,245 + -1.5
2,280,246 - -1.1
2,280,249 + -0.9
2,280,249 + -0.6
2,280,249 + -1.3
2,280,312 - -2.4
2,280,312 - -1.1
2,280,312 - -1.3
2,280,315 + -0.5
2,280,316 - -0.9
2,280,316 - -0.7
2,280,316 - -1.3
2,280,376 + +0.5
2,280,436 + -1.8
2,280,438 + -2.2
2,280,558 + +0.1
2,280,703 - ECD_02203 0.13 -0.5
2,280,750 + ECD_02203 0.16 -3.1
2,280,751 - ECD_02203 0.16 -1.7
2,281,017 - ECD_02203 0.30 -1.7
2,281,066 - ECD_02203 0.33 -1.9
2,281,105 - ECD_02203 0.35 -0.8

Or see this region's nucleotide sequence