Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02199 and ECD_02200 overlap by 4 nucleotides ECD_02200 and ECD_02201 are separated by 67 nucleotides ECD_02201 and ECD_02202 are separated by 6 nucleotides
ECD_02199: ECD_02199 - putative ISRSO11-transposase OrfA protein, at 2,275,808 to 2,276,329
_02199
ECD_02200: ECD_02200 - YadA protein, at 2,276,326 to 2,277,165
_02200
ECD_02201: ECD_02201 - NADH:ubiquinone oxidoreductase, membrane subunit N, at 2,277,233 to 2,278,690
_02201
ECD_02202: ECD_02202 - NADH:ubiquinone oxidoreductase, membrane subunit M, at 2,278,697 to 2,280,226
_02202
Position (kb)
2277
2278
2279 Strain fitness (log2 ratio)
-2
-1
0
1 at 2277.168 kb on + strand at 2277.168 kb on + strand at 2277.220 kb on - strand at 2277.234 kb on + strand at 2277.234 kb on + strand at 2277.234 kb on + strand at 2277.235 kb on - strand at 2277.262 kb on + strand at 2277.265 kb on + strand at 2277.266 kb on - strand at 2277.284 kb on + strand at 2277.300 kb on - strand at 2277.417 kb on + strand, within ECD_02201 at 2277.417 kb on + strand, within ECD_02201 at 2277.424 kb on - strand, within ECD_02201 at 2277.502 kb on - strand, within ECD_02201 at 2277.784 kb on + strand, within ECD_02201 at 2277.784 kb on + strand, within ECD_02201 at 2277.784 kb on + strand, within ECD_02201 at 2277.785 kb on - strand, within ECD_02201 at 2278.000 kb on - strand, within ECD_02201 at 2278.001 kb on + strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.002 kb on - strand, within ECD_02201 at 2278.102 kb on + strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.159 kb on - strand, within ECD_02201 at 2278.362 kb on - strand, within ECD_02201 at 2278.374 kb on + strand, within ECD_02201 at 2278.375 kb on - strand, within ECD_02201 at 2278.398 kb on + strand, within ECD_02201 at 2278.399 kb on - strand, within ECD_02201 at 2278.451 kb on + strand, within ECD_02201 at 2278.502 kb on - strand, within ECD_02201 at 2278.577 kb on - strand at 2278.682 kb on + strand at 2278.683 kb on - strand at 2278.683 kb on - strand at 2278.708 kb on + strand at 2278.712 kb on - strand at 2278.712 kb on - strand at 2279.236 kb on - strand, within ECD_02202 at 2279.239 kb on + strand, within ECD_02202 at 2279.356 kb on + strand, within ECD_02202 at 2279.357 kb on - strand, within ECD_02202 at 2279.565 kb on + strand, within ECD_02202 at 2279.566 kb on - strand, within ECD_02202 at 2279.590 kb on + strand, within ECD_02202 at 2279.591 kb on - strand, within ECD_02202 at 2279.637 kb on + strand, within ECD_02202
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,277,168 + -1.5 2,277,168 + -0.6 2,277,220 - -0.5 2,277,234 + +0.1 2,277,234 + -0.0 2,277,234 + -0.2 2,277,235 - +0.1 2,277,262 + +0.1 2,277,265 + +0.7 2,277,266 - -0.4 2,277,284 + +0.5 2,277,300 - -0.9 2,277,417 + ECD_02201 0.13 +0.2 2,277,417 + ECD_02201 0.13 -2.4 2,277,424 - ECD_02201 0.13 -1.2 2,277,502 - ECD_02201 0.18 -1.6 2,277,784 + ECD_02201 0.38 -1.0 2,277,784 + ECD_02201 0.38 -1.0 2,277,784 + ECD_02201 0.38 -1.8 2,277,785 - ECD_02201 0.38 -1.4 2,278,000 - ECD_02201 0.53 -1.0 2,278,001 + ECD_02201 0.53 -0.0 2,278,002 - ECD_02201 0.53 -2.0 2,278,002 - ECD_02201 0.53 -0.5 2,278,002 - ECD_02201 0.53 -0.3 2,278,002 - ECD_02201 0.53 -2.6 2,278,102 + ECD_02201 0.60 -1.1 2,278,159 - ECD_02201 0.64 -0.5 2,278,159 - ECD_02201 0.64 -1.0 2,278,159 - ECD_02201 0.64 -0.7 2,278,362 - ECD_02201 0.77 +0.0 2,278,374 + ECD_02201 0.78 -0.3 2,278,375 - ECD_02201 0.78 -1.8 2,278,398 + ECD_02201 0.80 -0.8 2,278,399 - ECD_02201 0.80 -1.3 2,278,451 + ECD_02201 0.84 -0.6 2,278,502 - ECD_02201 0.87 -2.5 2,278,577 - -0.8 2,278,682 + -0.6 2,278,683 - -0.8 2,278,683 - -0.0 2,278,708 + -1.2 2,278,712 - -0.7 2,278,712 - -2.4 2,279,236 - ECD_02202 0.35 -0.7 2,279,239 + ECD_02202 0.35 -0.4 2,279,356 + ECD_02202 0.43 -1.8 2,279,357 - ECD_02202 0.43 -0.5 2,279,565 + ECD_02202 0.57 -1.5 2,279,566 - ECD_02202 0.57 -0.7 2,279,590 + ECD_02202 0.58 -1.7 2,279,591 - ECD_02202 0.58 +0.1 2,279,637 + ECD_02202 0.61 +0.2
Or see this region's nucleotide sequence