Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02143 and ECD_02144 overlap by 82 nucleotides ECD_02144 and ECD_02145 are separated by 274 nucleotides ECD_02145 and ECD_02146 are separated by 166 nucleotides
ECD_02143: ECD_02143 - IS1 protein InsB, at 2,206,416 to 2,206,919
_02143
ECD_02144: ECD_02144 - IS1 protein InsA, at 2,206,838 to 2,207,113
_02144
ECD_02145: ECD_02145 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN, at 2,207,388 to 2,210,237
_02145
ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230
_02146
Position (kb)
2207
2208
2209
2210
2211 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2207.180 kb on - strand at 2207.187 kb on - strand at 2207.224 kb on - strand at 2207.319 kb on + strand at 2207.423 kb on - strand at 2207.425 kb on - strand at 2207.425 kb on - strand at 2207.597 kb on + strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.598 kb on - strand at 2207.645 kb on + strand at 2207.646 kb on - strand at 2207.650 kb on - strand at 2207.774 kb on + strand, within ECD_02145 at 2207.893 kb on - strand, within ECD_02145 at 2207.983 kb on - strand, within ECD_02145 at 2207.994 kb on - strand, within ECD_02145 at 2208.031 kb on + strand, within ECD_02145 at 2208.031 kb on + strand, within ECD_02145 at 2208.032 kb on - strand, within ECD_02145 at 2208.225 kb on - strand, within ECD_02145 at 2208.445 kb on - strand, within ECD_02145 at 2208.536 kb on - strand, within ECD_02145 at 2208.544 kb on - strand, within ECD_02145 at 2208.544 kb on - strand, within ECD_02145 at 2208.568 kb on - strand, within ECD_02145 at 2208.572 kb on - strand, within ECD_02145 at 2208.666 kb on - strand, within ECD_02145 at 2209.023 kb on - strand, within ECD_02145 at 2209.056 kb on - strand, within ECD_02145 at 2209.056 kb on - strand, within ECD_02145 at 2209.070 kb on - strand, within ECD_02145 at 2209.074 kb on - strand, within ECD_02145 at 2209.074 kb on - strand, within ECD_02145 at 2209.228 kb on + strand, within ECD_02145 at 2209.401 kb on - strand, within ECD_02145 at 2209.701 kb on - strand, within ECD_02145 at 2210.014 kb on + strand at 2210.192 kb on - strand at 2210.192 kb on - strand at 2210.378 kb on - strand at 2210.411 kb on - strand at 2210.490 kb on + strand at 2210.493 kb on + strand at 2210.507 kb on + strand at 2210.713 kb on + strand, within ECD_02146 at 2210.759 kb on + strand, within ECD_02146 at 2210.826 kb on + strand, within ECD_02146 at 2211.154 kb on - strand, within ECD_02146 at 2211.192 kb on + strand, within ECD_02146
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,207,180 - +1.6 2,207,187 - -0.4 2,207,224 - -1.9 2,207,319 + -0.1 2,207,423 - -0.2 2,207,425 - -0.2 2,207,425 - +0.0 2,207,597 + +1.4 2,207,598 - +0.4 2,207,598 - -0.4 2,207,598 - +0.8 2,207,598 - +0.0 2,207,598 - -0.7 2,207,645 + +1.6 2,207,646 - -0.4 2,207,650 - +0.5 2,207,774 + ECD_02145 0.14 +2.1 2,207,893 - ECD_02145 0.18 -0.2 2,207,983 - ECD_02145 0.21 +0.1 2,207,994 - ECD_02145 0.21 -0.0 2,208,031 + ECD_02145 0.23 +0.8 2,208,031 + ECD_02145 0.23 -0.2 2,208,032 - ECD_02145 0.23 -0.1 2,208,225 - ECD_02145 0.29 +0.6 2,208,445 - ECD_02145 0.37 -0.3 2,208,536 - ECD_02145 0.40 +0.1 2,208,544 - ECD_02145 0.41 -0.4 2,208,544 - ECD_02145 0.41 +1.0 2,208,568 - ECD_02145 0.41 -0.1 2,208,572 - ECD_02145 0.42 +0.6 2,208,666 - ECD_02145 0.45 -0.3 2,209,023 - ECD_02145 0.57 +0.8 2,209,056 - ECD_02145 0.59 +0.1 2,209,056 - ECD_02145 0.59 +0.9 2,209,070 - ECD_02145 0.59 +0.1 2,209,074 - ECD_02145 0.59 +0.3 2,209,074 - ECD_02145 0.59 -0.0 2,209,228 + ECD_02145 0.65 +0.6 2,209,401 - ECD_02145 0.71 -1.8 2,209,701 - ECD_02145 0.81 -0.2 2,210,014 + +1.3 2,210,192 - +0.1 2,210,192 - -0.0 2,210,378 - -0.7 2,210,411 - -0.3 2,210,490 + -0.7 2,210,493 + -0.4 2,210,507 + -0.3 2,210,713 + ECD_02146 0.17 +0.5 2,210,759 + ECD_02146 0.19 -0.5 2,210,826 + ECD_02146 0.23 +0.2 2,211,154 - ECD_02146 0.41 -0.1 2,211,192 + ECD_02146 0.43 +0.6
Or see this region's nucleotide sequence