Strain Fitness in Escherichia coli BL21 around ECD_01975

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01974 and ECD_01975 are separated by 133 nucleotidesECD_01975 and ECD_01976 are separated by 12 nucleotides ECD_01974: ECD_01974 - 3-methyl-adenine DNA glycosylase II, at 2,045,691 to 2,046,539 _01974 ECD_01975: ECD_01975 - Hsp70 chaperone family protein, at 2,046,673 to 2,048,025 _01975 ECD_01976: ECD_01976 - protein kinase-related putative non-specific DNA-binding protein, at 2,048,038 to 2,049,978 _01976 Position (kb) 2046 2047 2048 2049Strain fitness (log2 ratio) -1 0 1 2at 2045.744 kb on - strandat 2045.958 kb on + strand, within ECD_01974at 2045.959 kb on - strand, within ECD_01974at 2046.021 kb on - strand, within ECD_01974at 2046.086 kb on - strand, within ECD_01974at 2046.116 kb on - strand, within ECD_01974at 2046.174 kb on + strand, within ECD_01974at 2046.437 kb on - strand, within ECD_01974at 2046.437 kb on - strand, within ECD_01974at 2046.536 kb on - strandat 2046.536 kb on - strandat 2046.691 kb on + strandat 2046.691 kb on + strandat 2046.823 kb on + strand, within ECD_01975at 2046.824 kb on - strand, within ECD_01975at 2047.554 kb on - strand, within ECD_01975at 2047.573 kb on + strand, within ECD_01975at 2047.573 kb on + strand, within ECD_01975at 2047.579 kb on - strand, within ECD_01975at 2047.883 kb on - strand, within ECD_01975at 2048.050 kb on + strandat 2048.419 kb on - strand, within ECD_01976at 2048.619 kb on - strand, within ECD_01976at 2048.828 kb on - strand, within ECD_01976

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,045,744 - -0.1
2,045,958 + ECD_01974 0.31 +1.7
2,045,959 - ECD_01974 0.32 +0.9
2,046,021 - ECD_01974 0.39 -0.9
2,046,086 - ECD_01974 0.47 +0.5
2,046,116 - ECD_01974 0.50 +2.1
2,046,174 + ECD_01974 0.57 +0.5
2,046,437 - ECD_01974 0.88 -0.9
2,046,437 - ECD_01974 0.88 +1.1
2,046,536 - -0.7
2,046,536 - +0.8
2,046,691 + +2.0
2,046,691 + +1.7
2,046,823 + ECD_01975 0.11 +1.1
2,046,824 - ECD_01975 0.11 -0.1
2,047,554 - ECD_01975 0.65 +0.4
2,047,573 + ECD_01975 0.67 +0.7
2,047,573 + ECD_01975 0.67 +0.6
2,047,579 - ECD_01975 0.67 +0.9
2,047,883 - ECD_01975 0.89 +0.4
2,048,050 + +0.8
2,048,419 - ECD_01976 0.20 -1.0
2,048,619 - ECD_01976 0.30 +0.0
2,048,828 - ECD_01976 0.41 -0.9

Or see this region's nucleotide sequence