Strain Fitness in Escherichia coli BL21 around ECD_01954

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01953 and ECD_01954 are separated by 54 nucleotidesECD_01954 and ECD_01955 are separated by 192 nucleotides ECD_01953: ECD_01953 - colanic biosynthesis UDP-glucose lipid carrier transferase, at 2,019,078 to 2,020,472 _01953 ECD_01954: ECD_01954 - phosphomannomutase, at 2,020,527 to 2,021,897 _01954 ECD_01955: ECD_01955 - mannose-1-phosphate guanyltransferase, at 2,022,090 to 2,023,526 _01955 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -2 -1 0 1at 2019.914 kb on + strand, within ECD_01953at 2020.085 kb on + strand, within ECD_01953at 2020.337 kb on - strandat 2020.374 kb on + strandat 2020.375 kb on - strandat 2021.004 kb on - strand, within ECD_01954at 2021.613 kb on - strand, within ECD_01954at 2021.951 kb on + strandat 2021.965 kb on + strandat 2022.012 kb on + strandat 2022.222 kb on - strandat 2022.255 kb on - strand, within ECD_01955at 2022.400 kb on + strand, within ECD_01955at 2022.400 kb on + strand, within ECD_01955at 2022.432 kb on + strand, within ECD_01955at 2022.592 kb on + strand, within ECD_01955at 2022.592 kb on + strand, within ECD_01955at 2022.593 kb on - strand, within ECD_01955

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,019,914 + ECD_01953 0.60 -0.3
2,020,085 + ECD_01953 0.72 +0.1
2,020,337 - +0.3
2,020,374 + -1.3
2,020,375 - +0.5
2,021,004 - ECD_01954 0.35 -1.5
2,021,613 - ECD_01954 0.79 -0.3
2,021,951 + +1.4
2,021,965 + +0.9
2,022,012 + +1.3
2,022,222 - +1.5
2,022,255 - ECD_01955 0.11 +0.4
2,022,400 + ECD_01955 0.22 +0.5
2,022,400 + ECD_01955 0.22 +0.1
2,022,432 + ECD_01955 0.24 -0.3
2,022,592 + ECD_01955 0.35 +0.3
2,022,592 + ECD_01955 0.35 -1.8
2,022,593 - ECD_01955 0.35 +1.1

Or see this region's nucleotide sequence