Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01878 and ECD_01879 overlap by 4 nucleotides ECD_01879 and ECD_01880 are separated by 121 nucleotides ECD_01880 and ECD_01881 overlap by 82 nucleotides ECD_01881 and ECD_01882 are separated by 1 nucleotides
ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847
_01878
ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353
_01879
ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750
_01880
ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172
_01881
ECD_01882: ECD_01882 - glyoxalase III and Hsp31 molecular chaperone, at 1,941,174 to 1,941,833
_01882
Position (kb)
1939
1940
1941 Strain fitness (log2 ratio)
-2
-1
0
1 at 1938.961 kb on - strand, within ECD_01878 at 1939.003 kb on + strand, within ECD_01878 at 1939.209 kb on - strand, within ECD_01878 at 1939.435 kb on - strand, within ECD_01878 at 1939.466 kb on - strand, within ECD_01878 at 1939.597 kb on + strand, within ECD_01878 at 1939.598 kb on - strand, within ECD_01878 at 1939.644 kb on + strand, within ECD_01878 at 1939.777 kb on + strand at 1940.131 kb on - strand, within ECD_01879 at 1940.332 kb on + strand at 1940.333 kb on - strand at 1940.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 1,938,961 - ECD_01878 0.52 +0.1 1,939,003 + ECD_01878 0.54 +0.4 1,939,209 - ECD_01878 0.65 +0.1 1,939,435 - ECD_01878 0.77 -0.6 1,939,466 - ECD_01878 0.79 +0.1 1,939,597 + ECD_01878 0.86 +0.5 1,939,598 - ECD_01878 0.86 +0.1 1,939,644 + ECD_01878 0.89 -1.1 1,939,777 + -1.9 1,940,131 - ECD_01879 0.56 -1.1 1,940,332 + +0.6 1,940,333 - +1.0 1,940,346 - -0.5
Or see this region's nucleotide sequence