Strain Fitness in Escherichia coli BL21 around ECD_01879

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01878 and ECD_01879 overlap by 4 nucleotidesECD_01879 and ECD_01880 are separated by 121 nucleotidesECD_01880 and ECD_01881 overlap by 82 nucleotidesECD_01881 and ECD_01882 are separated by 1 nucleotides ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847 _01878 ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353 _01879 ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750 _01880 ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172 _01881 ECD_01882: ECD_01882 - glyoxalase III and Hsp31 molecular chaperone, at 1,941,174 to 1,941,833 _01882 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -2 -1 0 1at 1938.961 kb on - strand, within ECD_01878at 1939.003 kb on + strand, within ECD_01878at 1939.209 kb on - strand, within ECD_01878at 1939.435 kb on - strand, within ECD_01878at 1939.466 kb on - strand, within ECD_01878at 1939.597 kb on + strand, within ECD_01878at 1939.598 kb on - strand, within ECD_01878at 1939.644 kb on + strand, within ECD_01878at 1939.777 kb on + strandat 1940.131 kb on - strand, within ECD_01879at 1940.332 kb on + strandat 1940.333 kb on - strandat 1940.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,938,961 - ECD_01878 0.52 +0.1
1,939,003 + ECD_01878 0.54 +0.4
1,939,209 - ECD_01878 0.65 +0.1
1,939,435 - ECD_01878 0.77 -0.6
1,939,466 - ECD_01878 0.79 +0.1
1,939,597 + ECD_01878 0.86 +0.5
1,939,598 - ECD_01878 0.86 +0.1
1,939,644 + ECD_01878 0.89 -1.1
1,939,777 + -1.9
1,940,131 - ECD_01879 0.56 -1.1
1,940,332 + +0.6
1,940,333 - +1.0
1,940,346 - -0.5

Or see this region's nucleotide sequence