Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01186 and ECD_01187 overlap by 1 nucleotides ECD_01187 and ECD_01188 overlap by 4 nucleotides ECD_01188 and ECD_01189 are separated by 3 nucleotides ECD_01189 and ECD_01190 are separated by 35 nucleotides
ECD_01186: ECD_01186 - peptide chain release factor RF-1, at 1,253,160 to 1,254,242
_01186
ECD_01187: ECD_01187 - RF-1 and RF-2 N5-glutamine methyltransferase, at 1,254,242 to 1,255,075
_01187
ECD_01188: ECD_01188 - SIRB family inner membrane protein, at 1,255,072 to 1,255,464
_01188
ECD_01189: ECD_01189 - transglutaminase-like TPR-repeat protein, at 1,255,468 to 1,256,277
_01189
ECD_01190: ECD_01190 - 3-deoxy-D-manno-octulosonate 8-phosphate synthase, at 1,256,313 to 1,257,167
_01190
Position (kb) 1255
1256 Strain fitness (log2 ratio) -1
0
1 at 1255.232 kb on + strand, within ECD_01188 at 1255.341 kb on + strand, within ECD_01188 at 1255.631 kb on + strand, within ECD_01189 at 1255.631 kb on + strand, within ECD_01189 at 1255.631 kb on + strand, within ECD_01189 at 1255.917 kb on + strand, within ECD_01189 at 1256.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 1,255,232 + ECD_01188 0.41 -1.0 1,255,341 + ECD_01188 0.68 -0.2 1,255,631 + ECD_01189 0.20 +0.2 1,255,631 + ECD_01189 0.20 +0.4 1,255,631 + ECD_01189 0.20 +0.3 1,255,917 + ECD_01189 0.55 +0.9 1,256,244 + -0.8
Or see this region's nucleotide sequence