Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01032 and ECD_01033 are separated by 101 nucleotides ECD_01033 and ECD_01034 are separated by 63 nucleotides ECD_01034 and ECD_01035 are separated by 26 nucleotides ECD_01035 and ECD_01036 are separated by 24 nucleotides ECD_01036 and ECD_01037 are separated by 4 nucleotides
ECD_01032: ECD_01032 - redox enzyme maturation protein (REMP) chaperone for YcdX, at 1,102,207 to 1,102,761
_01032
ECD_01033: ECD_01033 - DUF1097 family inner membrane protein, at 1,102,863 to 1,103,354
_01033
ECD_01034: ECD_01034 - curli production assembly/transport outer membrane lipoprotein, at 1,103,418 to 1,104,251
_01034
ECD_01035: ECD_01035 - curli nucleation outer membrane protein, at 1,104,278 to 1,104,694
_01035
ECD_01036: ECD_01036 - curlin secretion specificity factor, at 1,104,719 to 1,105,108
_01036
ECD_01037: ECD_01037 - csgBAC operon transcriptional regulator, at 1,105,113 to 1,105,763
_01037
Position (kb)
1103
1104
1105 Strain fitness (log2 ratio)
-1
0
1 at 1102.621 kb on + strand, within ECD_01032 at 1102.809 kb on + strand at 1102.870 kb on + strand at 1102.870 kb on + strand at 1102.880 kb on + strand at 1103.067 kb on + strand, within ECD_01033 at 1103.067 kb on + strand, within ECD_01033 at 1103.072 kb on + strand, within ECD_01033 at 1103.141 kb on + strand, within ECD_01033 at 1103.571 kb on - strand, within ECD_01034 at 1103.571 kb on - strand, within ECD_01034
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 1,102,621 + ECD_01032 0.75 +0.4 1,102,809 + +1.7 1,102,870 + -1.3 1,102,870 + +0.4 1,102,880 + +0.3 1,103,067 + ECD_01033 0.41 +0.2 1,103,067 + ECD_01033 0.41 +0.2 1,103,072 + ECD_01033 0.42 -0.9 1,103,141 + ECD_01033 0.57 -0.6 1,103,571 - ECD_01034 0.18 +0.2 1,103,571 - ECD_01034 0.18 -1.2
Or see this region's nucleotide sequence