Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00991 and ECD_00992 are separated by 285 nucleotides ECD_00992 and ECD_00993 are separated by 173 nucleotides ECD_00993 and ECD_00994 overlap by 11 nucleotides ECD_00994 and ECD_00995 are separated by 47 nucleotides
ECD_00991: ECD_00991 - stress protein, member of the CspA-family, at 1,055,252 to 1,055,464
_00991
ECD_00992: ECD_00992 - cold shock protein-like protein, cold-inducible, at 1,055,750 to 1,055,962
_00992
ECD_00993: ECD_00993 - cold shock gene, at 1,056,136 to 1,056,366
_00993
ECD_00994: ECD_00994 - putative phosphatidylethanolamine synthesis regulator, at 1,056,356 to 1,056,529
_00994
ECD_00995: ECD_00995 - putative 4Fe-4S membrane protein, at 1,056,577 to 1,057,650
_00995
Position (kb) 1056
1057 Strain fitness (log2 ratio) -1
0
1 at 1055.617 kb on + strand at 1055.960 kb on + strand at 1055.961 kb on - strand at 1055.972 kb on + strand at 1056.026 kb on + strand at 1056.026 kb on + strand at 1056.068 kb on + strand at 1056.124 kb on + strand at 1056.223 kb on - strand, within ECD_00993 at 1056.503 kb on + strand, within ECD_00994 at 1056.816 kb on + strand, within ECD_00995 at 1057.054 kb on - strand, within ECD_00995
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 1,055,617 + +0.2 1,055,960 + +0.3 1,055,961 - -0.3 1,055,972 + +0.2 1,056,026 + -0.9 1,056,026 + -0.1 1,056,068 + -0.4 1,056,124 + +0.9 1,056,223 - ECD_00993 0.38 -0.9 1,056,503 + ECD_00994 0.84 -0.3 1,056,816 + ECD_00995 0.22 +0.3 1,057,054 - ECD_00995 0.44 +0.6
Or see this region's nucleotide sequence