Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00983 and ECD_00984 are separated by 114 nucleotides ECD_00984 and ECD_00985 are separated by 19 nucleotides ECD_00985 and ECD_00986 overlap by 13 nucleotides
ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004
_00983
ECD_00984: ECD_00984 - tyrosine-protein kinase, role in O-antigen capsule formation, at 1,047,119 to 1,049,299
_00984
ECD_00985: ECD_00985 - O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase, at 1,049,319 to 1,049,765
_00985
ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892
_00986
Position (kb)
1047
1048
1049
1050 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1046.122 kb on + strand, within ECD_00983 at 1046.146 kb on + strand, within ECD_00983 at 1046.147 kb on - strand, within ECD_00983 at 1046.308 kb on + strand, within ECD_00983 at 1046.636 kb on + strand, within ECD_00983 at 1046.668 kb on + strand, within ECD_00983 at 1046.879 kb on - strand at 1047.150 kb on + strand at 1047.154 kb on + strand at 1047.154 kb on + strand at 1047.215 kb on - strand at 1047.725 kb on - strand, within ECD_00984 at 1048.130 kb on - strand, within ECD_00984 at 1048.145 kb on + strand, within ECD_00984 at 1048.279 kb on - strand, within ECD_00984 at 1048.300 kb on - strand, within ECD_00984 at 1048.574 kb on - strand, within ECD_00984 at 1048.724 kb on - strand, within ECD_00984 at 1048.778 kb on - strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1048.812 kb on + strand, within ECD_00984 at 1049.122 kb on + strand at 1049.308 kb on - strand at 1049.495 kb on + strand, within ECD_00985 at 1049.665 kb on - strand, within ECD_00985
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 1,046,122 + ECD_00983 0.32 +0.4 1,046,146 + ECD_00983 0.34 -1.6 1,046,147 - ECD_00983 0.34 +0.4 1,046,308 + ECD_00983 0.46 +0.7 1,046,636 + ECD_00983 0.72 +1.1 1,046,668 + ECD_00983 0.74 +1.8 1,046,879 - +0.7 1,047,150 + -0.3 1,047,154 + +1.4 1,047,154 + +0.8 1,047,215 - +0.8 1,047,725 - ECD_00984 0.28 -0.7 1,048,130 - ECD_00984 0.46 -0.4 1,048,145 + ECD_00984 0.47 +0.4 1,048,279 - ECD_00984 0.53 -0.2 1,048,300 - ECD_00984 0.54 -0.0 1,048,574 - ECD_00984 0.67 +0.2 1,048,724 - ECD_00984 0.74 -0.8 1,048,778 - ECD_00984 0.76 -0.8 1,048,812 + ECD_00984 0.78 -0.4 1,048,812 + ECD_00984 0.78 -1.6 1,049,122 + -1.2 1,049,308 - -2.0 1,049,495 + ECD_00985 0.39 -0.2 1,049,665 - ECD_00985 0.77 -0.1
Or see this region's nucleotide sequence