Strain Fitness in Escherichia coli BL21 around ECD_00975

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00974 and ECD_t00023 are separated by 206 nucleotidesECD_t00023 and ECD_00975 are separated by 426 nucleotidesECD_00975 and ECD_00976 overlap by 4 nucleotides ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507 _00974 ECD_t00023: ECD_t00023 - tRNA-Ser, at 1,036,714 to 1,036,801 _t00023 ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346 _00975 ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136 _00976 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.435 kb on - strand, within ECD_00974at 1036.439 kb on - strand, within ECD_00974at 1036.463 kb on - strandat 1036.475 kb on - strandat 1036.475 kb on - strandat 1036.475 kb on - strandat 1036.555 kb on - strandat 1036.645 kb on - strandat 1036.694 kb on - strandat 1036.694 kb on - strandat 1036.711 kb on - strandat 1036.711 kb on - strandat 1036.711 kb on - strandat 1036.995 kb on - strandat 1037.070 kb on + strandat 1037.076 kb on + strandat 1037.076 kb on + strandat 1037.297 kb on + strandat 1037.298 kb on - strandat 1037.391 kb on + strand, within ECD_00975at 1037.501 kb on - strand, within ECD_00975at 1037.562 kb on - strand, within ECD_00975at 1037.593 kb on + strand, within ECD_00975at 1037.842 kb on + strand, within ECD_00975at 1037.843 kb on - strand, within ECD_00975at 1037.843 kb on - strand, within ECD_00975at 1037.846 kb on + strand, within ECD_00975at 1037.846 kb on + strand, within ECD_00975at 1037.847 kb on - strand, within ECD_00975at 1037.847 kb on - strand, within ECD_00975at 1037.906 kb on + strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1037.907 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.042 kb on - strand, within ECD_00975at 1038.290 kb on - strandat 1038.301 kb on + strandat 1038.522 kb on - strandat 1038.579 kb on + strand, within ECD_00976at 1038.630 kb on + strand, within ECD_00976at 1038.633 kb on + strand, within ECD_00976at 1038.634 kb on - strand, within ECD_00976at 1038.655 kb on - strand, within ECD_00976at 1038.669 kb on + strand, within ECD_00976at 1038.746 kb on + strand, within ECD_00976at 1038.747 kb on - strand, within ECD_00976at 1039.131 kb on + strand, within ECD_00976at 1039.237 kb on - strand, within ECD_00976at 1039.252 kb on + strand, within ECD_00976

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,036,435 - ECD_00974 0.89 +0.1
1,036,439 - ECD_00974 0.90 -0.7
1,036,463 - +0.4
1,036,475 - -0.2
1,036,475 - +0.7
1,036,475 - +0.1
1,036,555 - -0.1
1,036,645 - +0.3
1,036,694 - +0.5
1,036,694 - -0.4
1,036,711 - +0.2
1,036,711 - -0.8
1,036,711 - +0.0
1,036,995 - -0.2
1,037,070 + -0.3
1,037,076 + +0.6
1,037,076 + +0.9
1,037,297 + +0.7
1,037,298 - -0.5
1,037,391 + ECD_00975 0.15 +0.6
1,037,501 - ECD_00975 0.24 -2.2
1,037,562 - ECD_00975 0.30 -1.4
1,037,593 + ECD_00975 0.33 +0.2
1,037,842 + ECD_00975 0.55 +0.5
1,037,843 - ECD_00975 0.55 +1.4
1,037,843 - ECD_00975 0.55 -0.0
1,037,846 + ECD_00975 0.55 -0.9
1,037,846 + ECD_00975 0.55 -0.5
1,037,847 - ECD_00975 0.55 +0.2
1,037,847 - ECD_00975 0.55 +0.2
1,037,906 + ECD_00975 0.61 -1.6
1,037,907 - ECD_00975 0.61 +0.2
1,037,907 - ECD_00975 0.61 -1.4
1,037,907 - ECD_00975 0.61 +0.6
1,038,042 - ECD_00975 0.73 +0.4
1,038,042 - ECD_00975 0.73 -1.9
1,038,042 - ECD_00975 0.73 +0.6
1,038,290 - +0.4
1,038,301 + +0.5
1,038,522 - +1.0
1,038,579 + ECD_00976 0.13 +0.9
1,038,630 + ECD_00976 0.16 +1.1
1,038,633 + ECD_00976 0.16 +0.4
1,038,634 - ECD_00976 0.16 +1.4
1,038,655 - ECD_00976 0.17 -0.4
1,038,669 + ECD_00976 0.18 +0.4
1,038,746 + ECD_00976 0.22 -0.9
1,038,747 - ECD_00976 0.23 +2.5
1,039,131 + ECD_00976 0.44 -0.1
1,039,237 - ECD_00976 0.50 +0.2
1,039,252 + ECD_00976 0.51 +0.4

Or see this region's nucleotide sequence