Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00830 and ECD_00831 are separated by 162 nucleotides ECD_00831 and ECD_00832 are separated by 17 nucleotides
ECD_00830: ECD_00830 - hypothetical protein, at 877,889 to 878,812
_00830
ECD_00831: ECD_00831 - retron EC86 RNA-directed DNA polymerase-like protein, at 878,975 to 879,937
_00831
ECD_00832: ECD_00832 - putative capsid portal protein, at 879,955 to 880,983
_00832
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 878.693 kb on + strand, within ECD_00830 at 878.698 kb on + strand, within ECD_00830 at 878.779 kb on + strand at 878.779 kb on + strand at 878.828 kb on + strand at 878.877 kb on + strand at 878.877 kb on + strand at 878.957 kb on + strand at 879.125 kb on + strand, within ECD_00831 at 879.198 kb on + strand, within ECD_00831 at 879.655 kb on + strand, within ECD_00831 at 880.346 kb on + strand, within ECD_00832 at 880.346 kb on + strand, within ECD_00832 at 880.346 kb on + strand, within ECD_00832 at 880.347 kb on - strand, within ECD_00832 at 880.382 kb on + strand, within ECD_00832 at 880.539 kb on - strand, within ECD_00832 at 880.558 kb on - strand, within ECD_00832 at 880.561 kb on + strand, within ECD_00832 at 880.562 kb on - strand, within ECD_00832 at 880.721 kb on + strand, within ECD_00832 at 880.721 kb on + strand, within ECD_00832 at 880.810 kb on + strand, within ECD_00832
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 878,693 + ECD_00830 0.87 +0.1 878,698 + ECD_00830 0.88 +0.0 878,779 + +0.3 878,779 + -0.5 878,828 + -0.4 878,877 + -0.1 878,877 + -0.6 878,957 + -0.6 879,125 + ECD_00831 0.16 -0.4 879,198 + ECD_00831 0.23 -0.3 879,655 + ECD_00831 0.71 -1.5 880,346 + ECD_00832 0.38 +0.6 880,346 + ECD_00832 0.38 -0.9 880,346 + ECD_00832 0.38 +0.3 880,347 - ECD_00832 0.38 -1.1 880,382 + ECD_00832 0.41 +1.1 880,539 - ECD_00832 0.57 +0.4 880,558 - ECD_00832 0.59 -0.5 880,561 + ECD_00832 0.59 -0.6 880,562 - ECD_00832 0.59 -0.4 880,721 + ECD_00832 0.74 -2.0 880,721 + ECD_00832 0.74 +0.4 880,810 + ECD_00832 0.83 +0.4
Or see this region's nucleotide sequence