Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00685 and ECD_00686 are separated by 14 nucleotides ECD_00686 and ECD_00687 are separated by 365 nucleotides
ECD_00685: ECD_00685 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding, at 717,276 to 720,077
_00685
ECD_00686: ECD_00686 - dihydrolipoyltranssuccinase, at 720,092 to 721,309
_00686
ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841
_00687
Position (kb) 720
721
722 Strain fitness (log2 ratio) -1
0
1 at 721.307 kb on + strand at 721.307 kb on + strand at 721.308 kb on - strand at 721.310 kb on + strand at 721.310 kb on + strand at 721.311 kb on - strand at 721.316 kb on - strand at 721.333 kb on + strand at 721.398 kb on - strand at 721.422 kb on + strand at 721.488 kb on - strand at 721.513 kb on + strand at 721.514 kb on - strand at 721.624 kb on - strand at 721.633 kb on - strand at 721.749 kb on + strand at 721.753 kb on - strand at 721.925 kb on - strand, within ECD_00687 at 721.999 kb on + strand, within ECD_00687 at 722.022 kb on + strand, within ECD_00687 at 722.146 kb on + strand, within ECD_00687 at 722.187 kb on + strand, within ECD_00687
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 721,307 + +0.5 721,307 + -0.6 721,308 - +0.5 721,310 + -0.1 721,310 + +0.0 721,311 - +1.0 721,316 - +0.1 721,333 + +1.5 721,398 - -0.3 721,422 + +1.2 721,488 - -1.4 721,513 + +0.4 721,514 - -1.2 721,624 - +0.5 721,633 - -0.6 721,749 + -0.4 721,753 - -0.0 721,925 - ECD_00687 0.21 -0.2 721,999 + ECD_00687 0.28 +0.1 722,022 + ECD_00687 0.30 +0.3 722,146 + ECD_00687 0.40 -0.5 722,187 + ECD_00687 0.44 +0.3
Or see this region's nucleotide sequence