Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00632 and ECD_00633 are separated by 47 nucleotides ECD_00633 and ECD_00634 are separated by 8 nucleotides
ECD_00632: ECD_00632 - UMP phosphatase, at 659,448 to 660,200
_00632
ECD_00633: ECD_00633 - N-acetylglucosamine-inducible nag divergent operon transcriptional repressor, at 660,248 to 661,468
_00633
ECD_00634: ECD_00634 - N-acetylglucosamine-6-phosphate deacetylase, at 661,477 to 662,625
_00634
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1 at 659.354 kb on - strand at 659.446 kb on - strand at 659.446 kb on - strand at 659.454 kb on - strand at 659.480 kb on - strand at 659.683 kb on + strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.806 kb on + strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.817 kb on - strand, within ECD_00632 at 659.836 kb on + strand, within ECD_00632 at 659.837 kb on - strand, within ECD_00632 at 659.885 kb on + strand, within ECD_00632 at 659.938 kb on + strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.996 kb on - strand, within ECD_00632 at 660.013 kb on - strand, within ECD_00632 at 660.071 kb on - strand, within ECD_00632 at 660.149 kb on + strand at 660.227 kb on - strand at 660.348 kb on - strand at 660.362 kb on - strand at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.911 kb on - strand, within ECD_00633 at 660.933 kb on - strand, within ECD_00633 at 661.050 kb on + strand, within ECD_00633 at 661.055 kb on - strand, within ECD_00633 at 661.150 kb on + strand, within ECD_00633 at 661.313 kb on - strand, within ECD_00633 at 661.415 kb on - strand at 661.415 kb on - strand at 661.443 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.561 kb on - strand at 661.672 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.751 kb on - strand, within ECD_00634 at 661.891 kb on - strand, within ECD_00634 at 661.902 kb on - strand, within ECD_00634 at 661.974 kb on - strand, within ECD_00634 at 662.329 kb on - strand, within ECD_00634 at 662.347 kb on - strand, within ECD_00634 at 662.396 kb on - strand, within ECD_00634
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 659,354 - -1.7 659,446 - -0.5 659,446 - -0.4 659,454 - -0.7 659,480 - +0.6 659,683 + ECD_00632 0.31 +0.4 659,684 - ECD_00632 0.31 -0.3 659,684 - ECD_00632 0.31 -0.2 659,684 - ECD_00632 0.31 +0.0 659,806 + ECD_00632 0.48 -0.4 659,807 - ECD_00632 0.48 +0.3 659,807 - ECD_00632 0.48 +0.3 659,817 - ECD_00632 0.49 +0.7 659,836 + ECD_00632 0.52 +0.5 659,837 - ECD_00632 0.52 -0.3 659,885 + ECD_00632 0.58 +0.0 659,938 + ECD_00632 0.65 +0.6 659,994 - ECD_00632 0.73 -1.4 659,994 - ECD_00632 0.73 -0.4 659,996 - ECD_00632 0.73 -1.0 660,013 - ECD_00632 0.75 -0.1 660,071 - ECD_00632 0.83 +1.2 660,149 + -0.5 660,227 - -0.3 660,348 - -0.9 660,362 - -0.3 660,519 + ECD_00633 0.22 -0.5 660,519 + ECD_00633 0.22 +0.6 660,519 + ECD_00633 0.22 -0.8 660,911 - ECD_00633 0.54 -1.7 660,933 - ECD_00633 0.56 -0.7 661,050 + ECD_00633 0.66 -0.5 661,055 - ECD_00633 0.66 +0.4 661,150 + ECD_00633 0.74 +0.5 661,313 - ECD_00633 0.87 -0.9 661,415 - +0.1 661,415 - -1.2 661,443 - -1.4 661,469 - -0.7 661,469 - -0.1 661,469 - -1.3 661,561 - -0.6 661,672 - ECD_00634 0.17 -1.4 661,749 - ECD_00634 0.24 -0.9 661,749 - ECD_00634 0.24 -1.1 661,751 - ECD_00634 0.24 -1.0 661,891 - ECD_00634 0.36 -2.2 661,902 - ECD_00634 0.37 -0.1 661,974 - ECD_00634 0.43 -1.9 662,329 - ECD_00634 0.74 -0.5 662,347 - ECD_00634 0.76 -1.5 662,396 - ECD_00634 0.80 -0.6
Or see this region's nucleotide sequence