Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00573 and ECD_00574 are separated by 371 nucleotides ECD_00574 and ECD_00575 are separated by 244 nucleotides
ECD_00573: ECD_00573 - thiol:disulfide interchange protein, periplasmic, at 597,642 to 598,403
_00573
ECD_00574: ECD_00574 - alkyl hydroperoxide reductase, C22 subunit, at 598,775 to 599,338
_00574
ECD_00575: ECD_00575 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding, at 599,583 to 601,148
_00575
Position (kb) 598
599
600 Strain fitness (log2 ratio) -2
-1
0
1 at 597.819 kb on - strand, within ECD_00573 at 597.822 kb on + strand, within ECD_00573 at 597.823 kb on - strand, within ECD_00573 at 597.840 kb on + strand, within ECD_00573 at 597.963 kb on + strand, within ECD_00573 at 597.964 kb on - strand, within ECD_00573 at 597.964 kb on - strand, within ECD_00573 at 598.049 kb on - strand, within ECD_00573 at 598.186 kb on + strand, within ECD_00573 at 598.193 kb on - strand, within ECD_00573 at 598.193 kb on - strand, within ECD_00573 at 598.211 kb on + strand, within ECD_00573 at 598.229 kb on - strand, within ECD_00573 at 598.252 kb on + strand, within ECD_00573 at 598.265 kb on - strand, within ECD_00573 at 598.405 kb on - strand at 598.452 kb on + strand at 598.452 kb on + strand at 598.464 kb on - strand at 598.475 kb on + strand at 598.475 kb on + strand at 598.475 kb on + strand at 598.500 kb on - strand at 598.512 kb on + strand at 598.512 kb on + strand at 598.536 kb on + strand at 598.585 kb on - strand at 598.623 kb on + strand at 598.678 kb on + strand at 598.683 kb on + strand at 598.743 kb on + strand at 598.743 kb on + strand at 598.744 kb on - strand at 598.772 kb on + strand at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.977 kb on + strand, within ECD_00574 at 598.986 kb on + strand, within ECD_00574 at 598.990 kb on + strand, within ECD_00574 at 599.092 kb on + strand, within ECD_00574 at 599.243 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.247 kb on + strand, within ECD_00574 at 599.329 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.397 kb on + strand at 599.405 kb on + strand at 599.405 kb on + strand at 599.676 kb on - strand at 599.747 kb on + strand, within ECD_00575 at 599.748 kb on - strand, within ECD_00575 at 599.766 kb on - strand, within ECD_00575 at 599.972 kb on + strand, within ECD_00575 at 599.973 kb on - strand, within ECD_00575 at 600.013 kb on + strand, within ECD_00575 at 600.219 kb on + strand, within ECD_00575 at 600.220 kb on - strand, within ECD_00575 at 600.282 kb on - strand, within ECD_00575
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 597,819 - ECD_00573 0.23 -0.4 597,822 + ECD_00573 0.24 +0.3 597,823 - ECD_00573 0.24 +0.6 597,840 + ECD_00573 0.26 +0.8 597,963 + ECD_00573 0.42 +0.3 597,964 - ECD_00573 0.42 +0.6 597,964 - ECD_00573 0.42 +0.8 598,049 - ECD_00573 0.53 +0.8 598,186 + ECD_00573 0.71 -0.4 598,193 - ECD_00573 0.72 -0.4 598,193 - ECD_00573 0.72 -0.1 598,211 + ECD_00573 0.75 -0.1 598,229 - ECD_00573 0.77 +0.3 598,252 + ECD_00573 0.80 -1.4 598,265 - ECD_00573 0.82 +0.7 598,405 - +0.5 598,452 + +0.9 598,452 + -0.3 598,464 - -0.3 598,475 + -0.1 598,475 + +0.1 598,475 + -0.0 598,500 - -0.7 598,512 + +0.6 598,512 + +0.3 598,536 + +0.3 598,585 - +1.0 598,623 + +0.1 598,678 + +0.1 598,683 + -0.3 598,743 + +0.5 598,743 + +0.4 598,744 - -0.2 598,772 + -0.3 598,977 + ECD_00574 0.36 -2.1 598,977 + ECD_00574 0.36 +1.2 598,977 + ECD_00574 0.36 -0.9 598,977 + ECD_00574 0.36 -0.1 598,986 + ECD_00574 0.37 -1.2 598,990 + ECD_00574 0.38 -2.0 599,092 + ECD_00574 0.56 -2.0 599,243 + ECD_00574 0.83 -0.3 599,247 + ECD_00574 0.84 -1.1 599,247 + ECD_00574 0.84 -0.2 599,329 + +0.5 599,397 + -0.6 599,397 + +0.5 599,397 + -0.5 599,405 + -0.6 599,405 + -0.7 599,676 - -0.6 599,747 + ECD_00575 0.10 +0.2 599,748 - ECD_00575 0.11 -0.1 599,766 - ECD_00575 0.12 +0.2 599,972 + ECD_00575 0.25 +0.5 599,973 - ECD_00575 0.25 +0.5 600,013 + ECD_00575 0.27 -0.2 600,219 + ECD_00575 0.41 -0.7 600,220 - ECD_00575 0.41 -0.2 600,282 - ECD_00575 0.45 -0.9
Or see this region's nucleotide sequence