Strain Fitness in Escherichia coli BL21 around ECD_00560

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00559 and ECD_00560 are separated by 374 nucleotidesECD_00560 and ECD_00561 are separated by 9 nucleotides ECD_00559: ECD_00559 - ferrienterobactin ABC transporter periplasmic binding protein, at 584,041 to 584,997 _00559 ECD_00560: ECD_00560 - isochorismate synthase 1, at 585,372 to 586,547 _00560 ECD_00561: ECD_00561 - 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, at 586,557 to 588,167 _00561 Position (kb) 585 586 587Strain fitness (log2 ratio) -2 -1 0 1 2at 584.402 kb on + strand, within ECD_00559at 584.559 kb on - strand, within ECD_00559at 584.693 kb on + strand, within ECD_00559at 584.694 kb on - strand, within ECD_00559at 584.853 kb on + strand, within ECD_00559at 584.878 kb on - strand, within ECD_00559at 584.963 kb on - strandat 585.017 kb on - strandat 585.289 kb on - strandat 585.377 kb on + strandat 585.377 kb on + strandat 585.378 kb on - strandat 585.440 kb on + strandat 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.636 kb on + strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.637 kb on - strand, within ECD_00560at 585.639 kb on - strand, within ECD_00560at 585.789 kb on - strand, within ECD_00560at 585.971 kb on - strand, within ECD_00560at 586.151 kb on - strand, within ECD_00560at 586.179 kb on - strand, within ECD_00560at 586.221 kb on - strand, within ECD_00560at 586.517 kb on + strandat 586.745 kb on + strand, within ECD_00561at 586.789 kb on + strand, within ECD_00561at 586.790 kb on - strand, within ECD_00561at 586.816 kb on - strand, within ECD_00561at 586.817 kb on + strand, within ECD_00561at 587.175 kb on + strand, within ECD_00561at 587.176 kb on - strand, within ECD_00561at 587.178 kb on + strand, within ECD_00561at 587.179 kb on - strand, within ECD_00561at 587.181 kb on + strand, within ECD_00561at 587.182 kb on - strand, within ECD_00561at 587.182 kb on - strand, within ECD_00561at 587.195 kb on + strand, within ECD_00561at 587.259 kb on - strand, within ECD_00561at 587.262 kb on + strand, within ECD_00561at 587.262 kb on + strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.263 kb on - strand, within ECD_00561at 587.471 kb on - strand, within ECD_00561

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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584,402 + ECD_00559 0.38 +0.7
584,559 - ECD_00559 0.54 +0.3
584,693 + ECD_00559 0.68 +1.1
584,694 - ECD_00559 0.68 +0.8
584,853 + ECD_00559 0.85 +0.5
584,878 - ECD_00559 0.87 +0.1
584,963 - +0.8
585,017 - +0.1
585,289 - -0.8
585,377 + -0.5
585,377 + -0.6
585,378 - -0.3
585,440 + +0.6
585,636 + ECD_00560 0.22 -1.9
585,636 + ECD_00560 0.22 +0.1
585,636 + ECD_00560 0.22 +0.5
585,636 + ECD_00560 0.22 -0.4
585,637 - ECD_00560 0.23 -1.8
585,637 - ECD_00560 0.23 -1.8
585,637 - ECD_00560 0.23 -0.8
585,639 - ECD_00560 0.23 +0.4
585,789 - ECD_00560 0.35 +0.0
585,971 - ECD_00560 0.51 -0.7
586,151 - ECD_00560 0.66 +0.5
586,179 - ECD_00560 0.69 -0.8
586,221 - ECD_00560 0.72 -1.4
586,517 + -0.7
586,745 + ECD_00561 0.12 +0.3
586,789 + ECD_00561 0.14 -0.4
586,790 - ECD_00561 0.14 -1.0
586,816 - ECD_00561 0.16 -1.2
586,817 + ECD_00561 0.16 -0.5
587,175 + ECD_00561 0.38 +1.0
587,176 - ECD_00561 0.38 +0.3
587,178 + ECD_00561 0.39 -1.0
587,179 - ECD_00561 0.39 +0.3
587,181 + ECD_00561 0.39 -0.1
587,182 - ECD_00561 0.39 -0.8
587,182 - ECD_00561 0.39 +0.4
587,195 + ECD_00561 0.40 +0.8
587,259 - ECD_00561 0.44 +2.0
587,262 + ECD_00561 0.44 +0.4
587,262 + ECD_00561 0.44 -0.6
587,263 - ECD_00561 0.44 -0.8
587,263 - ECD_00561 0.44 -0.0
587,263 - ECD_00561 0.44 -0.6
587,471 - ECD_00561 0.57 -2.0

Or see this region's nucleotide sequence