Strain Fitness in Escherichia coli BL21 around ECD_00484

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00483 and ECD_00484 are separated by 10 nucleotidesECD_00484 and ECD_00485 are separated by 2 nucleotidesECD_00485 and ECD_t00007 are separated by 242 nucleotidesECD_t00007 and ECD_00486 are separated by 15 nucleotides ECD_00483: ECD_00483 - FimA-like protein, at 531,435 to 532,412 _00483 ECD_00484: ECD_00484 - FimA-like protein, at 532,423 to 532,938 _00484 ECD_00485: ECD_00485 - response regulator family protein, at 532,941 to 533,573 _00485 ECD_t00007: ECD_t00007 - tRNA-Arg, at 533,816 to 533,892 _t00007 ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071 _00486 Position (kb) 532 533Strain fitness (log2 ratio) -1 0 1at 531.915 kb on + strand, within ECD_00483at 531.959 kb on + strand, within ECD_00483at 531.959 kb on + strand, within ECD_00483at 532.274 kb on + strand, within ECD_00483at 532.493 kb on + strand, within ECD_00484at 532.547 kb on + strand, within ECD_00484at 532.604 kb on + strand, within ECD_00484at 532.865 kb on - strand, within ECD_00484at 533.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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531,915 + ECD_00483 0.49 -0.0
531,959 + ECD_00483 0.54 +0.6
531,959 + ECD_00483 0.54 -0.1
532,274 + ECD_00483 0.86 -1.0
532,493 + ECD_00484 0.14 -0.5
532,547 + ECD_00484 0.24 -0.4
532,604 + ECD_00484 0.35 -1.0
532,865 - ECD_00484 0.86 -0.7
533,534 + +0.0

Or see this region's nucleotide sequence