Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00190 and ECD_00191 are separated by 13 nucleotides ECD_00191 and ECD_00192 are separated by 199 nucleotides ECD_00192 and ECD_00193 are separated by 52 nucleotides
ECD_00190: ECD_00190 - alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase, ribosome-attached, at 217,676 to 218,098
_00190
ECD_00191: ECD_00191 - lipoprotein involved with copper homeostasis and adhesion, at 218,112 to 218,822
_00191
ECD_00192: ECD_00192 - putative lipoprotein, at 219,022 to 219,846
_00192
ECD_00193: ECD_00193 - prolyl-tRNA synthetase, at 219,899 to 221,617
_00193
Position (kb) 219
220 Strain fitness (log2 ratio) -1
0
1 at 218.159 kb on + strand at 218.159 kb on + strand at 218.174 kb on + strand at 218.177 kb on + strand at 218.373 kb on + strand, within ECD_00191 at 218.378 kb on + strand, within ECD_00191 at 218.508 kb on + strand, within ECD_00191 at 218.509 kb on - strand, within ECD_00191 at 218.511 kb on - strand, within ECD_00191 at 218.536 kb on + strand, within ECD_00191 at 218.536 kb on + strand, within ECD_00191 at 218.537 kb on - strand, within ECD_00191 at 218.540 kb on + strand, within ECD_00191 at 218.568 kb on + strand, within ECD_00191 at 218.574 kb on + strand, within ECD_00191 at 218.575 kb on - strand, within ECD_00191 at 218.576 kb on + strand, within ECD_00191 at 218.695 kb on + strand, within ECD_00191 at 218.704 kb on + strand, within ECD_00191 at 218.718 kb on - strand, within ECD_00191 at 218.759 kb on - strand at 218.969 kb on + strand at 218.970 kb on - strand at 218.978 kb on + strand at 218.978 kb on + strand at 218.993 kb on - strand at 219.015 kb on + strand at 219.016 kb on - strand at 219.059 kb on + strand at 219.059 kb on + strand at 219.060 kb on - strand at 219.086 kb on + strand at 219.087 kb on - strand at 219.135 kb on + strand, within ECD_00192 at 219.135 kb on + strand, within ECD_00192 at 219.136 kb on - strand, within ECD_00192 at 219.180 kb on + strand, within ECD_00192 at 219.381 kb on - strand, within ECD_00192 at 219.384 kb on + strand, within ECD_00192 at 219.394 kb on - strand, within ECD_00192 at 219.480 kb on + strand, within ECD_00192 at 219.743 kb on - strand, within ECD_00192 at 219.774 kb on + strand at 219.778 kb on + strand at 219.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 218,159 + -0.4 218,159 + +0.2 218,174 + -0.9 218,177 + -0.4 218,373 + ECD_00191 0.37 -0.5 218,378 + ECD_00191 0.37 +0.8 218,508 + ECD_00191 0.56 -0.7 218,509 - ECD_00191 0.56 +0.8 218,511 - ECD_00191 0.56 +0.9 218,536 + ECD_00191 0.60 +0.3 218,536 + ECD_00191 0.60 +0.4 218,537 - ECD_00191 0.60 -0.1 218,540 + ECD_00191 0.60 +0.9 218,568 + ECD_00191 0.64 +1.0 218,574 + ECD_00191 0.65 +0.4 218,575 - ECD_00191 0.65 +1.1 218,576 + ECD_00191 0.65 -0.0 218,695 + ECD_00191 0.82 +0.7 218,704 + ECD_00191 0.83 -0.9 218,718 - ECD_00191 0.85 +0.7 218,759 - +0.6 218,969 + -0.1 218,970 - -0.4 218,978 + +0.0 218,978 + -1.2 218,993 - +0.5 219,015 + +0.3 219,016 - +0.8 219,059 + -0.3 219,059 + -0.8 219,060 - +0.9 219,086 + +0.0 219,087 - +0.1 219,135 + ECD_00192 0.14 -1.6 219,135 + ECD_00192 0.14 +0.8 219,136 - ECD_00192 0.14 -1.0 219,180 + ECD_00192 0.19 -0.4 219,381 - ECD_00192 0.44 +0.4 219,384 + ECD_00192 0.44 +0.3 219,394 - ECD_00192 0.45 -0.9 219,480 + ECD_00192 0.56 +0.7 219,743 - ECD_00192 0.87 -1.1 219,774 + -0.0 219,778 + +0.9 219,778 + +0.4
Or see this region's nucleotide sequence