Strain Fitness in Escherichia coli BL21 around ECD_00100

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00099 and ECD_00100 are separated by 59 nucleotidesECD_00100 and ECD_00101 are separated by 215 nucleotidesECD_00101 and ECD_00102 are separated by 9 nucleotides ECD_00099: ECD_00099 - preprotein translocase subunit, ATPase, at 111,084 to 113,789 _00099 ECD_00100: ECD_00100 - dGTP-preferring nucleoside triphosphate pyrophosphohydrolase, at 113,849 to 114,238 _00100 ECD_00101: ECD_00101 - DNA gyrase inhibitor, at 114,454 to 114,651 _00101 ECD_00102: ECD_00102 - FtsZ stabilizer, at 114,661 to 115,404 _00102 Position (kb) 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1at 113.575 kb on + strandat 113.575 kb on + strandat 113.575 kb on + strandat 113.575 kb on + strandat 113.576 kb on - strandat 113.579 kb on + strandat 113.579 kb on + strandat 113.579 kb on + strandat 113.579 kb on + strandat 113.580 kb on - strandat 113.654 kb on + strandat 113.719 kb on + strandat 113.719 kb on + strandat 113.719 kb on + strandat 113.794 kb on + strandat 113.836 kb on + strandat 113.875 kb on + strandat 113.875 kb on + strandat 113.876 kb on - strandat 113.905 kb on + strand, within ECD_00100at 114.087 kb on + strand, within ECD_00100at 114.087 kb on + strand, within ECD_00100at 114.087 kb on + strand, within ECD_00100at 114.088 kb on - strand, within ECD_00100at 114.178 kb on + strand, within ECD_00100at 114.226 kb on + strandat 114.237 kb on - strandat 114.246 kb on - strandat 114.432 kb on + strandat 114.433 kb on - strandat 114.640 kb on - strandat 114.640 kb on - strandat 114.640 kb on - strandat 114.663 kb on - strandat 114.663 kb on - strandat 114.751 kb on - strand, within ECD_00102at 114.751 kb on - strand, within ECD_00102at 114.751 kb on - strand, within ECD_00102at 114.751 kb on - strand, within ECD_00102at 114.900 kb on + strand, within ECD_00102at 114.900 kb on + strand, within ECD_00102at 114.901 kb on - strand, within ECD_00102at 114.901 kb on - strand, within ECD_00102at 114.901 kb on - strand, within ECD_00102at 114.901 kb on - strand, within ECD_00102at 114.944 kb on - strand, within ECD_00102at 114.998 kb on - strand, within ECD_00102at 115.100 kb on - strand, within ECD_00102at 115.102 kb on + strand, within ECD_00102at 115.143 kb on + strand, within ECD_00102at 115.189 kb on - strand, within ECD_00102

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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113,575 + -0.1
113,575 + -0.4
113,575 + +0.1
113,575 + +0.1
113,576 - +0.2
113,579 + +0.8
113,579 + +1.4
113,579 + +0.7
113,579 + +0.4
113,580 - +0.1
113,654 + +0.0
113,719 + -0.7
113,719 + -0.7
113,719 + +1.2
113,794 + +0.2
113,836 + +0.6
113,875 + +0.4
113,875 + +0.0
113,876 - -0.3
113,905 + ECD_00100 0.14 -0.9
114,087 + ECD_00100 0.61 -0.6
114,087 + ECD_00100 0.61 -0.4
114,087 + ECD_00100 0.61 -0.2
114,088 - ECD_00100 0.61 -1.1
114,178 + ECD_00100 0.84 -0.7
114,226 + +0.7
114,237 - +0.5
114,246 - +0.4
114,432 + -0.4
114,433 - -0.7
114,640 - -0.5
114,640 - -0.3
114,640 - +0.0
114,663 - -0.2
114,663 - -0.5
114,751 - ECD_00102 0.12 -0.3
114,751 - ECD_00102 0.12 -0.2
114,751 - ECD_00102 0.12 +0.8
114,751 - ECD_00102 0.12 -0.5
114,900 + ECD_00102 0.32 +0.2
114,900 + ECD_00102 0.32 -0.9
114,901 - ECD_00102 0.32 -0.2
114,901 - ECD_00102 0.32 +0.3
114,901 - ECD_00102 0.32 -0.4
114,901 - ECD_00102 0.32 +0.3
114,944 - ECD_00102 0.38 +0.4
114,998 - ECD_00102 0.45 -1.8
115,100 - ECD_00102 0.59 +0.1
115,102 + ECD_00102 0.59 +0.5
115,143 + ECD_00102 0.65 -2.1
115,189 - ECD_00102 0.71 -2.8

Or see this region's nucleotide sequence