Strain Fitness in Escherichia coli BL21 around ECD_00048

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00047 and ECD_00048 overlap by 4 nucleotidesECD_00048 and ECD_00049 are separated by 56 nucleotides ECD_00047: ECD_00047 - putative oxidoreductase, at 48,376 to 49,662 _00047 ECD_00048: ECD_00048 - putative 4Fe-4S ferredoxin-type protein, at 49,659 to 49,946 _00048 ECD_00049: ECD_00049 - putative MFS sugar transporter; membrane protein, at 50,003 to 51,334 _00049 Position (kb) 49 50Strain fitness (log2 ratio) -1 0 1at 48.683 kb on - strand, within ECD_00047at 48.947 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.056 kb on + strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.297 kb on - strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.458 kb on + strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.459 kb on - strand, within ECD_00047at 49.800 kb on + strand, within ECD_00048at 49.800 kb on + strand, within ECD_00048at 49.801 kb on - strand, within ECD_00048at 49.801 kb on - strand, within ECD_00048at 49.958 kb on + strandat 49.958 kb on + strandat 50.096 kb on + strandat 50.097 kb on - strandat 50.100 kb on + strandat 50.101 kb on - strandat 50.101 kb on - strandat 50.107 kb on - strandat 50.228 kb on - strand, within ECD_00049at 50.347 kb on + strand, within ECD_00049at 50.456 kb on + strand, within ECD_00049at 50.457 kb on - strand, within ECD_00049at 50.457 kb on - strand, within ECD_00049at 50.643 kb on + strand, within ECD_00049at 50.644 kb on - strand, within ECD_00049at 50.866 kb on + strand, within ECD_00049at 50.878 kb on + strand, within ECD_00049at 50.878 kb on + strand, within ECD_00049at 50.890 kb on + strand, within ECD_00049

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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48,683 - ECD_00047 0.24 +1.4
48,947 + ECD_00047 0.44 +1.1
49,056 + ECD_00047 0.53 +0.9
49,056 + ECD_00047 0.53 -0.4
49,056 + ECD_00047 0.53 +0.4
49,056 + ECD_00047 0.53 -0.1
49,297 - ECD_00047 0.72 +0.9
49,297 - ECD_00047 0.72 +0.6
49,297 - ECD_00047 0.72 +0.4
49,458 + ECD_00047 0.84 -0.5
49,458 + ECD_00047 0.84 +0.3
49,458 + ECD_00047 0.84 -1.7
49,458 + ECD_00047 0.84 -0.4
49,458 + ECD_00047 0.84 +0.1
49,458 + ECD_00047 0.84 -1.7
49,459 - ECD_00047 0.84 -0.1
49,459 - ECD_00047 0.84 -0.6
49,459 - ECD_00047 0.84 -0.3
49,459 - ECD_00047 0.84 -0.6
49,800 + ECD_00048 0.49 -0.6
49,800 + ECD_00048 0.49 +0.1
49,801 - ECD_00048 0.49 -0.6
49,801 - ECD_00048 0.49 -0.4
49,958 + +0.6
49,958 + +0.1
50,096 + +0.1
50,097 - -0.1
50,100 + +0.0
50,101 - -0.2
50,101 - +0.5
50,107 - -0.6
50,228 - ECD_00049 0.17 +0.3
50,347 + ECD_00049 0.26 -0.3
50,456 + ECD_00049 0.34 +0.1
50,457 - ECD_00049 0.34 -0.7
50,457 - ECD_00049 0.34 +0.8
50,643 + ECD_00049 0.48 -0.8
50,644 - ECD_00049 0.48 +0.6
50,866 + ECD_00049 0.65 -0.2
50,878 + ECD_00049 0.66 -0.0
50,878 + ECD_00049 0.66 -1.7
50,890 + ECD_00049 0.67 +1.1

Or see this region's nucleotide sequence