Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04141 and ECD_04142 are separated by 11 nucleotides ECD_04142 and ECD_04145 are separated by 791 nucleotides
ECD_04141: ECD_04141 - putative MFS transporter, membrane protein, at 4,414,315 to 4,415,532
_04141
ECD_04142: ECD_04142 - GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent, at 4,415,544 to 4,416,662
_04142
ECD_04145: ECD_04145 - IS911 protein, at 4,417,454 to 4,417,726
_04145
Position (kb)
4415
4416
4417 Strain fitness (log2 ratio)
-1
0
1 at 4414.623 kb on - strand, within ECD_04141 at 4414.626 kb on + strand, within ECD_04141 at 4414.913 kb on - strand, within ECD_04141 at 4416.181 kb on + strand, within ECD_04142 at 4416.223 kb on + strand, within ECD_04142 at 4416.259 kb on - strand, within ECD_04142 at 4416.430 kb on - strand, within ECD_04142 at 4416.500 kb on + strand, within ECD_04142 at 4416.578 kb on + strand at 4416.985 kb on + strand at 4416.985 kb on + strand at 4417.002 kb on - strand at 4417.038 kb on + strand at 4417.074 kb on + strand at 4417.090 kb on - strand at 4417.168 kb on + strand at 4417.172 kb on - strand at 4417.172 kb on - strand at 4417.181 kb on + strand at 4417.181 kb on + strand at 4417.182 kb on - strand at 4417.258 kb on + strand at 4417.259 kb on - strand at 4417.296 kb on - strand at 4417.296 kb on - strand at 4417.318 kb on + strand at 4417.326 kb on + strand at 4417.326 kb on + strand at 4417.326 kb on + strand at 4417.365 kb on - strand at 4417.520 kb on + strand, within ECD_04145 at 4417.520 kb on + strand, within ECD_04145 at 4417.653 kb on + strand, within ECD_04145 at 4417.654 kb on - strand, within ECD_04145 at 4417.658 kb on - strand, within ECD_04145
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 4,414,623 - ECD_04141 0.25 +0.3 4,414,626 + ECD_04141 0.26 -0.0 4,414,913 - ECD_04141 0.49 +0.9 4,416,181 + ECD_04142 0.57 +0.6 4,416,223 + ECD_04142 0.61 +0.7 4,416,259 - ECD_04142 0.64 -0.0 4,416,430 - ECD_04142 0.79 -0.3 4,416,500 + ECD_04142 0.85 +0.8 4,416,578 + +0.3 4,416,985 + +0.4 4,416,985 + -0.1 4,417,002 - +0.4 4,417,038 + -0.4 4,417,074 + -0.4 4,417,090 - +0.3 4,417,168 + +0.3 4,417,172 - -0.2 4,417,172 - +0.1 4,417,181 + +0.4 4,417,181 + +0.2 4,417,182 - +0.3 4,417,258 + +0.3 4,417,259 - -0.2 4,417,296 - -0.1 4,417,296 - -0.0 4,417,318 + +0.3 4,417,326 + +0.5 4,417,326 + +0.7 4,417,326 + +0.2 4,417,365 - -0.6 4,417,520 + ECD_04145 0.24 -0.8 4,417,520 + ECD_04145 0.24 +0.1 4,417,653 + ECD_04145 0.73 -0.1 4,417,654 - ECD_04145 0.73 +0.7 4,417,658 - ECD_04145 0.75 -0.7
Or see this region's nucleotide sequence