Strain Fitness in Escherichia coli BL21 around ECD_03433

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03432 and ECD_03433 overlap by 4 nucleotidesECD_03433 and ECD_03434 overlap by 8 nucleotidesECD_03434 and ECD_03435 overlap by 7 nucleotides ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732 _03432 ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391 _03433 ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244 _03434 ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933 _03435 Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -1 0 1at 3609.735 kb on + strand, within ECD_03432at 3609.766 kb on + strand, within ECD_03432at 3609.766 kb on + strand, within ECD_03432at 3609.767 kb on - strand, within ECD_03432at 3609.806 kb on + strand, within ECD_03432at 3609.807 kb on - strand, within ECD_03432at 3610.006 kb on + strand, within ECD_03432at 3610.063 kb on - strand, within ECD_03432at 3610.063 kb on - strand, within ECD_03432at 3610.085 kb on + strand, within ECD_03432at 3610.085 kb on + strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.100 kb on + strand, within ECD_03432at 3610.100 kb on + strand, within ECD_03432at 3610.141 kb on + strand, within ECD_03432at 3610.265 kb on + strand, within ECD_03432at 3610.265 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.352 kb on + strand, within ECD_03432at 3610.353 kb on - strand, within ECD_03432at 3610.353 kb on - strand, within ECD_03432at 3610.353 kb on - strand, within ECD_03432at 3610.375 kb on + strand, within ECD_03432at 3610.376 kb on - strand, within ECD_03432at 3610.376 kb on - strand, within ECD_03432at 3610.425 kb on + strand, within ECD_03432at 3610.631 kb on - strandat 3610.631 kb on - strandat 3610.631 kb on - strandat 3610.631 kb on - strandat 3610.714 kb on + strandat 3610.728 kb on + strandat 3610.728 kb on + strandat 3610.728 kb on + strandat 3610.729 kb on - strandat 3610.729 kb on - strandat 3610.803 kb on - strand, within ECD_03433at 3610.803 kb on - strand, within ECD_03433at 3611.109 kb on + strand, within ECD_03433at 3611.131 kb on + strand, within ECD_03433at 3611.132 kb on - strand, within ECD_03433at 3611.132 kb on - strand, within ECD_03433at 3611.132 kb on - strand, within ECD_03433at 3611.212 kb on - strand, within ECD_03433at 3611.367 kb on + strandat 3611.368 kb on - strandat 3611.368 kb on - strandat 3611.408 kb on + strandat 3611.409 kb on - strandat 3611.709 kb on + strand, within ECD_03434at 3611.741 kb on + strand, within ECD_03434at 3611.875 kb on + strand, within ECD_03434at 3611.875 kb on + strand, within ECD_03434at 3611.876 kb on - strand, within ECD_03434at 3612.116 kb on - strand, within ECD_03434at 3612.126 kb on - strand, within ECD_03434at 3612.236 kb on - strandat 3612.237 kb on + strandat 3612.237 kb on + strandat 3612.238 kb on - strandat 3612.242 kb on + strandat 3612.242 kb on + strandat 3612.242 kb on + strandat 3612.243 kb on - strandat 3612.332 kb on + strand, within ECD_03435at 3612.356 kb on + strand, within ECD_03435at 3612.357 kb on - strand, within ECD_03435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
3,609,735 + ECD_03432 0.33 -0.2
3,609,766 + ECD_03432 0.35 +0.4
3,609,766 + ECD_03432 0.35 +0.4
3,609,767 - ECD_03432 0.35 +0.8
3,609,806 + ECD_03432 0.38 +0.3
3,609,807 - ECD_03432 0.38 +0.2
3,610,006 + ECD_03432 0.51 -0.9
3,610,063 - ECD_03432 0.55 +0.0
3,610,063 - ECD_03432 0.55 +0.8
3,610,085 + ECD_03432 0.57 -1.1
3,610,085 + ECD_03432 0.57 +0.1
3,610,086 - ECD_03432 0.57 +0.2
3,610,086 - ECD_03432 0.57 -0.0
3,610,086 - ECD_03432 0.57 -0.3
3,610,086 - ECD_03432 0.57 -0.3
3,610,086 - ECD_03432 0.57 +0.1
3,610,086 - ECD_03432 0.57 +0.5
3,610,092 - ECD_03432 0.57 +0.1
3,610,092 - ECD_03432 0.57 +0.2
3,610,092 - ECD_03432 0.57 -0.0
3,610,100 + ECD_03432 0.58 -0.1
3,610,100 + ECD_03432 0.58 +0.6
3,610,141 + ECD_03432 0.60 +0.1
3,610,265 + ECD_03432 0.69 -0.5
3,610,265 + ECD_03432 0.69 +0.3
3,610,352 + ECD_03432 0.75 +0.4
3,610,352 + ECD_03432 0.75 +0.1
3,610,352 + ECD_03432 0.75 +0.4
3,610,352 + ECD_03432 0.75 -0.6
3,610,352 + ECD_03432 0.75 -0.3
3,610,352 + ECD_03432 0.75 +0.2
3,610,353 - ECD_03432 0.75 -0.1
3,610,353 - ECD_03432 0.75 +0.3
3,610,353 - ECD_03432 0.75 +0.7
3,610,375 + ECD_03432 0.76 -1.1
3,610,376 - ECD_03432 0.76 -0.7
3,610,376 - ECD_03432 0.76 +0.6
3,610,425 + ECD_03432 0.79 -0.0
3,610,631 - -0.3
3,610,631 - -0.1
3,610,631 - +0.1
3,610,631 - +0.2
3,610,714 + +0.3
3,610,728 + -0.1
3,610,728 + +1.3
3,610,728 + -0.3
3,610,729 - +0.2
3,610,729 - +0.3
3,610,803 - ECD_03433 0.11 +0.1
3,610,803 - ECD_03433 0.11 +0.7
3,611,109 + ECD_03433 0.57 +0.7
3,611,131 + ECD_03433 0.61 +0.5
3,611,132 - ECD_03433 0.61 +0.1
3,611,132 - ECD_03433 0.61 +0.2
3,611,132 - ECD_03433 0.61 -0.7
3,611,212 - ECD_03433 0.73 +0.1
3,611,367 + +0.2
3,611,368 - -0.2
3,611,368 - +0.6
3,611,408 + +0.4
3,611,409 - +0.3
3,611,709 + ECD_03434 0.38 -1.7
3,611,741 + ECD_03434 0.41 -0.8
3,611,875 + ECD_03434 0.57 -0.4
3,611,875 + ECD_03434 0.57 -0.2
3,611,876 - ECD_03434 0.57 -0.7
3,612,116 - ECD_03434 0.85 -1.1
3,612,126 - ECD_03434 0.86 +0.5
3,612,236 - +0.6
3,612,237 + +0.0
3,612,237 + +0.3
3,612,238 - +0.7
3,612,242 + -0.1
3,612,242 + +0.2
3,612,242 + +0.3
3,612,243 - -0.3
3,612,332 + ECD_03435 0.14 +0.5
3,612,356 + ECD_03435 0.17 +0.6
3,612,357 - ECD_03435 0.17 +0.2

Or see this region's nucleotide sequence