Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03432 and ECD_03433 overlap by 4 nucleotides ECD_03433 and ECD_03434 overlap by 8 nucleotides ECD_03434 and ECD_03435 overlap by 7 nucleotides
ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732
_03432
ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391
_03433
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
ECD_03435: ECD_03435 - L-ribulose-5-phosphate 4-epimerase, at 3,612,238 to 3,612,933
_03435
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1 at 3609.735 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.767 kb on - strand, within ECD_03432 at 3609.806 kb on + strand, within ECD_03432 at 3609.807 kb on - strand, within ECD_03432 at 3610.006 kb on + strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.141 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.375 kb on + strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.425 kb on + strand, within ECD_03432 at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.714 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.729 kb on - strand at 3610.729 kb on - strand at 3610.803 kb on - strand, within ECD_03433 at 3610.803 kb on - strand, within ECD_03433 at 3611.109 kb on + strand, within ECD_03433 at 3611.131 kb on + strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.212 kb on - strand, within ECD_03433 at 3611.367 kb on + strand at 3611.368 kb on - strand at 3611.368 kb on - strand at 3611.408 kb on + strand at 3611.409 kb on - strand at 3611.709 kb on + strand, within ECD_03434 at 3611.741 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.875 kb on + strand, within ECD_03434 at 3611.876 kb on - strand, within ECD_03434 at 3612.116 kb on - strand, within ECD_03434 at 3612.126 kb on - strand, within ECD_03434 at 3612.236 kb on - strand at 3612.237 kb on + strand at 3612.237 kb on + strand at 3612.238 kb on - strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.242 kb on + strand at 3612.243 kb on - strand at 3612.332 kb on + strand, within ECD_03435 at 3612.356 kb on + strand, within ECD_03435 at 3612.357 kb on - strand, within ECD_03435
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,609,735 + ECD_03432 0.33 -0.2 3,609,766 + ECD_03432 0.35 +0.4 3,609,766 + ECD_03432 0.35 +0.4 3,609,767 - ECD_03432 0.35 +0.8 3,609,806 + ECD_03432 0.38 +0.3 3,609,807 - ECD_03432 0.38 +0.2 3,610,006 + ECD_03432 0.51 -0.9 3,610,063 - ECD_03432 0.55 +0.0 3,610,063 - ECD_03432 0.55 +0.8 3,610,085 + ECD_03432 0.57 -1.1 3,610,085 + ECD_03432 0.57 +0.1 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 -0.0 3,610,086 - ECD_03432 0.57 -0.3 3,610,086 - ECD_03432 0.57 -0.3 3,610,086 - ECD_03432 0.57 +0.1 3,610,086 - ECD_03432 0.57 +0.5 3,610,092 - ECD_03432 0.57 +0.1 3,610,092 - ECD_03432 0.57 +0.2 3,610,092 - ECD_03432 0.57 -0.0 3,610,100 + ECD_03432 0.58 -0.1 3,610,100 + ECD_03432 0.58 +0.6 3,610,141 + ECD_03432 0.60 +0.1 3,610,265 + ECD_03432 0.69 -0.5 3,610,265 + ECD_03432 0.69 +0.3 3,610,352 + ECD_03432 0.75 +0.4 3,610,352 + ECD_03432 0.75 +0.1 3,610,352 + ECD_03432 0.75 +0.4 3,610,352 + ECD_03432 0.75 -0.6 3,610,352 + ECD_03432 0.75 -0.3 3,610,352 + ECD_03432 0.75 +0.2 3,610,353 - ECD_03432 0.75 -0.1 3,610,353 - ECD_03432 0.75 +0.3 3,610,353 - ECD_03432 0.75 +0.7 3,610,375 + ECD_03432 0.76 -1.1 3,610,376 - ECD_03432 0.76 -0.7 3,610,376 - ECD_03432 0.76 +0.6 3,610,425 + ECD_03432 0.79 -0.0 3,610,631 - -0.3 3,610,631 - -0.1 3,610,631 - +0.1 3,610,631 - +0.2 3,610,714 + +0.3 3,610,728 + -0.1 3,610,728 + +1.3 3,610,728 + -0.3 3,610,729 - +0.2 3,610,729 - +0.3 3,610,803 - ECD_03433 0.11 +0.1 3,610,803 - ECD_03433 0.11 +0.7 3,611,109 + ECD_03433 0.57 +0.7 3,611,131 + ECD_03433 0.61 +0.5 3,611,132 - ECD_03433 0.61 +0.1 3,611,132 - ECD_03433 0.61 +0.2 3,611,132 - ECD_03433 0.61 -0.7 3,611,212 - ECD_03433 0.73 +0.1 3,611,367 + +0.2 3,611,368 - -0.2 3,611,368 - +0.6 3,611,408 + +0.4 3,611,409 - +0.3 3,611,709 + ECD_03434 0.38 -1.7 3,611,741 + ECD_03434 0.41 -0.8 3,611,875 + ECD_03434 0.57 -0.4 3,611,875 + ECD_03434 0.57 -0.2 3,611,876 - ECD_03434 0.57 -0.7 3,612,116 - ECD_03434 0.85 -1.1 3,612,126 - ECD_03434 0.86 +0.5 3,612,236 - +0.6 3,612,237 + +0.0 3,612,237 + +0.3 3,612,238 - +0.7 3,612,242 + -0.1 3,612,242 + +0.2 3,612,242 + +0.3 3,612,243 - -0.3 3,612,332 + ECD_03435 0.14 +0.5 3,612,356 + ECD_03435 0.17 +0.6 3,612,357 - ECD_03435 0.17 +0.2
Or see this region's nucleotide sequence