Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03293 and ECD_03294 overlap by 1 nucleotides ECD_03294 and ECD_03295 are separated by 449 nucleotides ECD_03295 and ECD_03296 are separated by 37 nucleotides
ECD_03293: ECD_03293 - putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity, at 3,445,012 to 3,446,190
_03293
ECD_03294: ECD_03294 - hypothetical protein, at 3,446,190 to 3,446,681
_03294
ECD_03295: ECD_03295 - stable heat shock chaperone, at 3,447,131 to 3,447,415
_03295
ECD_03296: ECD_03296 - gamma-glutamyltranspeptidase, at 3,447,453 to 3,449,195
_03296
Position (kb)
3447
3448 Strain fitness (log2 ratio)
-2
-1
0
1 at 3447.202 kb on + strand, within ECD_03295 at 3447.203 kb on - strand, within ECD_03295 at 3447.207 kb on + strand, within ECD_03295 at 3447.234 kb on - strand, within ECD_03295 at 3447.307 kb on + strand, within ECD_03295 at 3447.380 kb on + strand, within ECD_03295 at 3447.421 kb on + strand at 3447.454 kb on + strand at 3447.539 kb on + strand at 3447.600 kb on - strand at 3447.776 kb on + strand, within ECD_03296 at 3447.912 kb on - strand, within ECD_03296 at 3447.914 kb on + strand, within ECD_03296 at 3447.914 kb on + strand, within ECD_03296 at 3447.971 kb on + strand, within ECD_03296 at 3447.971 kb on + strand, within ECD_03296 at 3447.973 kb on + strand, within ECD_03296 at 3448.015 kb on + strand, within ECD_03296 at 3448.023 kb on - strand, within ECD_03296 at 3448.032 kb on - strand, within ECD_03296 at 3448.032 kb on - strand, within ECD_03296 at 3448.128 kb on - strand, within ECD_03296 at 3448.177 kb on + strand, within ECD_03296 at 3448.202 kb on - strand, within ECD_03296 at 3448.293 kb on + strand, within ECD_03296 at 3448.294 kb on - strand, within ECD_03296 at 3448.334 kb on - strand, within ECD_03296 at 3448.386 kb on - strand, within ECD_03296
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,447,202 + ECD_03295 0.25 -0.2 3,447,203 - ECD_03295 0.25 -0.5 3,447,207 + ECD_03295 0.27 -0.1 3,447,234 - ECD_03295 0.36 -0.7 3,447,307 + ECD_03295 0.62 -0.1 3,447,380 + ECD_03295 0.87 +0.2 3,447,421 + -2.4 3,447,454 + +0.6 3,447,539 + +0.6 3,447,600 - -0.7 3,447,776 + ECD_03296 0.19 +0.1 3,447,912 - ECD_03296 0.26 -1.3 3,447,914 + ECD_03296 0.26 -0.7 3,447,914 + ECD_03296 0.26 -0.5 3,447,971 + ECD_03296 0.30 +0.6 3,447,971 + ECD_03296 0.30 -0.5 3,447,973 + ECD_03296 0.30 -0.0 3,448,015 + ECD_03296 0.32 -0.3 3,448,023 - ECD_03296 0.33 +0.7 3,448,032 - ECD_03296 0.33 +0.1 3,448,032 - ECD_03296 0.33 +0.2 3,448,128 - ECD_03296 0.39 -0.6 3,448,177 + ECD_03296 0.42 -0.2 3,448,202 - ECD_03296 0.43 +0.0 3,448,293 + ECD_03296 0.48 +0.4 3,448,294 - ECD_03296 0.48 +0.3 3,448,334 - ECD_03296 0.51 +0.6 3,448,386 - ECD_03296 0.54 +0.5
Or see this region's nucleotide sequence