Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03257 and ECD_03258 are separated by 227 nucleotides ECD_03258 and ECD_03259 are separated by 96 nucleotides ECD_03259 and ECD_03260 are separated by 437 nucleotides ECD_03260 and ECD_03261 are separated by 16 nucleotides
ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964
_03257
ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668
_03258
ECD_03259: ECD_03259 - putative transcriptional accessory protein, at 3,397,765 to 3,400,086
_03259
ECD_03260: ECD_03260 - ferrous iron transporter, protein A, at 3,400,524 to 3,400,751
_03260
ECD_03261: ECD_03261 - ferrous iron transporter protein B and GTP-binding protein; membrane protein, at 3,400,768 to 3,403,089
_03261
Position (kb)
3397
3398
3399
3400
3401 Strain fitness (log2 ratio)
-2
-1
0
1 at 3396.797 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.811 kb on + strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.812 kb on - strand, within ECD_03257 at 3396.897 kb on + strand at 3396.952 kb on - strand at 3396.952 kb on - strand at 3396.998 kb on - strand at 3397.005 kb on + strand at 3397.038 kb on - strand at 3397.061 kb on - strand at 3397.080 kb on + strand at 3397.093 kb on - strand at 3397.135 kb on + strand at 3397.147 kb on - strand at 3397.148 kb on + strand at 3397.148 kb on + strand at 3397.245 kb on + strand, within ECD_03258 at 3397.245 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.249 kb on + strand, within ECD_03258 at 3397.333 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.339 kb on + strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.340 kb on - strand, within ECD_03258 at 3397.390 kb on - strand, within ECD_03258 at 3397.420 kb on + strand, within ECD_03258 at 3397.503 kb on + strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.541 kb on - strand, within ECD_03258 at 3397.612 kb on - strand, within ECD_03258 at 3397.636 kb on + strand at 3397.636 kb on + strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.637 kb on - strand at 3397.641 kb on + strand at 3397.642 kb on - strand at 3397.680 kb on - strand at 3397.722 kb on + strand at 3397.722 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.726 kb on + strand at 3397.860 kb on + strand at 3397.861 kb on - strand at 3397.861 kb on - strand at 3397.882 kb on + strand at 3397.926 kb on + strand at 3397.926 kb on + strand at 3397.927 kb on - strand at 3397.948 kb on + strand at 3397.948 kb on + strand at 3398.197 kb on + strand, within ECD_03259 at 3398.197 kb on + strand, within ECD_03259 at 3398.197 kb on + strand, within ECD_03259 at 3398.197 kb on + strand, within ECD_03259 at 3398.254 kb on + strand, within ECD_03259 at 3398.255 kb on - strand, within ECD_03259 at 3398.255 kb on - strand, within ECD_03259 at 3398.311 kb on + strand, within ECD_03259 at 3398.312 kb on - strand, within ECD_03259 at 3398.312 kb on - strand, within ECD_03259 at 3398.312 kb on - strand, within ECD_03259 at 3398.465 kb on + strand, within ECD_03259 at 3398.465 kb on + strand, within ECD_03259 at 3398.466 kb on - strand, within ECD_03259 at 3398.521 kb on + strand, within ECD_03259 at 3398.521 kb on + strand, within ECD_03259 at 3398.521 kb on + strand, within ECD_03259 at 3398.522 kb on - strand, within ECD_03259 at 3398.555 kb on + strand, within ECD_03259 at 3398.580 kb on + strand, within ECD_03259 at 3398.597 kb on + strand, within ECD_03259 at 3398.784 kb on - strand, within ECD_03259 at 3398.837 kb on - strand, within ECD_03259 at 3398.898 kb on + strand, within ECD_03259 at 3398.898 kb on + strand, within ECD_03259 at 3398.899 kb on - strand, within ECD_03259 at 3398.899 kb on - strand, within ECD_03259 at 3398.928 kb on + strand, within ECD_03259 at 3398.929 kb on - strand, within ECD_03259 at 3399.032 kb on - strand, within ECD_03259 at 3399.164 kb on + strand, within ECD_03259 at 3399.165 kb on - strand, within ECD_03259 at 3399.165 kb on - strand, within ECD_03259 at 3399.221 kb on + strand, within ECD_03259 at 3399.224 kb on + strand, within ECD_03259 at 3399.225 kb on - strand, within ECD_03259 at 3399.225 kb on - strand, within ECD_03259 at 3399.225 kb on - strand, within ECD_03259 at 3399.579 kb on + strand, within ECD_03259 at 3399.609 kb on - strand, within ECD_03259 at 3399.900 kb on + strand at 3399.906 kb on + strand at 3399.918 kb on + strand at 3400.161 kb on + strand at 3400.162 kb on - strand at 3400.162 kb on - strand at 3400.178 kb on - strand at 3400.212 kb on - strand at 3400.215 kb on - strand at 3400.215 kb on - strand at 3400.216 kb on + strand at 3400.217 kb on - strand at 3400.232 kb on - strand at 3400.300 kb on + strand at 3400.317 kb on - strand at 3400.317 kb on - strand at 3400.351 kb on + strand at 3400.429 kb on + strand at 3400.429 kb on + strand at 3400.489 kb on + strand at 3400.490 kb on - strand at 3400.490 kb on - strand at 3400.493 kb on + strand at 3400.501 kb on + strand at 3400.515 kb on + strand at 3400.515 kb on + strand at 3400.515 kb on + strand at 3400.516 kb on - strand at 3400.516 kb on - strand at 3400.516 kb on - strand at 3400.530 kb on + strand at 3400.530 kb on + strand at 3400.530 kb on + strand at 3400.530 kb on + strand at 3400.531 kb on - strand at 3400.531 kb on - strand at 3400.531 kb on - strand at 3400.531 kb on - strand at 3400.541 kb on + strand at 3400.542 kb on - strand at 3400.587 kb on + strand, within ECD_03260 at 3400.618 kb on + strand, within ECD_03260 at 3400.618 kb on + strand, within ECD_03260 at 3400.619 kb on - strand, within ECD_03260 at 3400.619 kb on - strand, within ECD_03260 at 3400.634 kb on + strand, within ECD_03260 at 3400.634 kb on + strand, within ECD_03260 at 3400.699 kb on + strand, within ECD_03260 at 3400.700 kb on - strand, within ECD_03260 at 3400.702 kb on + strand, within ECD_03260 at 3400.726 kb on + strand, within ECD_03260 at 3400.727 kb on - strand, within ECD_03260 at 3400.727 kb on - strand, within ECD_03260 at 3400.749 kb on + strand at 3400.750 kb on - strand at 3400.752 kb on + strand at 3400.753 kb on - strand at 3400.753 kb on - strand at 3400.753 kb on - strand at 3400.785 kb on - strand at 3400.790 kb on + strand at 3400.790 kb on + strand at 3400.791 kb on - strand at 3400.823 kb on + strand at 3400.823 kb on + strand at 3400.823 kb on + strand at 3400.823 kb on + strand at 3400.856 kb on + strand at 3400.860 kb on + strand at 3400.860 kb on + strand at 3400.861 kb on - strand at 3400.861 kb on - strand at 3400.861 kb on - strand at 3400.888 kb on - strand at 3400.948 kb on + strand at 3400.948 kb on + strand at 3400.949 kb on - strand at 3400.949 kb on - strand at 3400.949 kb on - strand at 3401.005 kb on + strand, within ECD_03261 at 3401.006 kb on - strand, within ECD_03261 at 3401.055 kb on + strand, within ECD_03261 at 3401.056 kb on - strand, within ECD_03261 at 3401.074 kb on + strand, within ECD_03261 at 3401.075 kb on - strand, within ECD_03261 at 3401.084 kb on + strand, within ECD_03261
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,396,797 + ECD_03257 0.77 -1.3 3,396,811 + ECD_03257 0.79 -0.3 3,396,811 + ECD_03257 0.79 +0.4 3,396,812 - ECD_03257 0.79 +0.5 3,396,812 - ECD_03257 0.79 -0.7 3,396,897 + +0.1 3,396,952 - -1.5 3,396,952 - -0.6 3,396,998 - +0.3 3,397,005 + -0.3 3,397,038 - -0.1 3,397,061 - -0.6 3,397,080 + -0.3 3,397,093 - +0.2 3,397,135 + +0.5 3,397,147 - +0.8 3,397,148 + +0.3 3,397,148 + +0.2 3,397,245 + ECD_03258 0.11 -0.2 3,397,245 + ECD_03258 0.11 +1.2 3,397,249 + ECD_03258 0.12 +0.4 3,397,249 + ECD_03258 0.12 -0.8 3,397,333 + ECD_03258 0.30 -0.0 3,397,339 + ECD_03258 0.31 -1.2 3,397,339 + ECD_03258 0.31 +0.4 3,397,339 + ECD_03258 0.31 +0.8 3,397,339 + ECD_03258 0.31 -0.6 3,397,340 - ECD_03258 0.31 -0.1 3,397,340 - ECD_03258 0.31 +0.5 3,397,390 - ECD_03258 0.42 -0.4 3,397,420 + ECD_03258 0.48 -0.3 3,397,503 + ECD_03258 0.65 +0.9 3,397,541 - ECD_03258 0.73 -2.3 3,397,541 - ECD_03258 0.73 +0.5 3,397,541 - ECD_03258 0.73 +0.4 3,397,612 - ECD_03258 0.88 -0.2 3,397,636 + -1.1 3,397,636 + -0.1 3,397,637 - -0.6 3,397,637 - +0.7 3,397,637 - +0.2 3,397,641 + -2.3 3,397,642 - -0.1 3,397,680 - -0.2 3,397,722 + -0.1 3,397,722 + -0.4 3,397,726 + +0.1 3,397,726 + +0.5 3,397,726 + -0.5 3,397,726 + +0.7 3,397,726 + -0.1 3,397,860 + +0.4 3,397,861 - -2.6 3,397,861 - +0.9 3,397,882 + +0.4 3,397,926 + -0.4 3,397,926 + -0.2 3,397,927 - -0.2 3,397,948 + -0.0 3,397,948 + +0.6 3,398,197 + ECD_03259 0.19 +0.2 3,398,197 + ECD_03259 0.19 +1.3 3,398,197 + ECD_03259 0.19 +1.0 3,398,197 + ECD_03259 0.19 -0.5 3,398,254 + ECD_03259 0.21 -0.5 3,398,255 - ECD_03259 0.21 -0.6 3,398,255 - ECD_03259 0.21 -0.1 3,398,311 + ECD_03259 0.24 +1.0 3,398,312 - ECD_03259 0.24 -0.3 3,398,312 - ECD_03259 0.24 +0.5 3,398,312 - ECD_03259 0.24 +0.6 3,398,465 + ECD_03259 0.30 +0.4 3,398,465 + ECD_03259 0.30 -0.6 3,398,466 - ECD_03259 0.30 +0.0 3,398,521 + ECD_03259 0.33 +0.3 3,398,521 + ECD_03259 0.33 -0.4 3,398,521 + ECD_03259 0.33 -0.1 3,398,522 - ECD_03259 0.33 +0.3 3,398,555 + ECD_03259 0.34 -0.1 3,398,580 + ECD_03259 0.35 +0.1 3,398,597 + ECD_03259 0.36 -0.5 3,398,784 - ECD_03259 0.44 +1.1 3,398,837 - ECD_03259 0.46 +0.0 3,398,898 + ECD_03259 0.49 +0.4 3,398,898 + ECD_03259 0.49 +1.0 3,398,899 - ECD_03259 0.49 +0.5 3,398,899 - ECD_03259 0.49 +0.6 3,398,928 + ECD_03259 0.50 +0.8 3,398,929 - ECD_03259 0.50 +0.5 3,399,032 - ECD_03259 0.55 +0.3 3,399,164 + ECD_03259 0.60 -0.5 3,399,165 - ECD_03259 0.60 +0.6 3,399,165 - ECD_03259 0.60 -0.3 3,399,221 + ECD_03259 0.63 +0.8 3,399,224 + ECD_03259 0.63 +1.5 3,399,225 - ECD_03259 0.63 -0.4 3,399,225 - ECD_03259 0.63 +0.5 3,399,225 - ECD_03259 0.63 -0.1 3,399,579 + ECD_03259 0.78 +0.1 3,399,609 - ECD_03259 0.79 +0.1 3,399,900 + -0.7 3,399,906 + +0.9 3,399,918 + -0.1 3,400,161 + +0.8 3,400,162 - +0.9 3,400,162 - -0.4 3,400,178 - -0.1 3,400,212 - +0.5 3,400,215 - -0.3 3,400,215 - +0.8 3,400,216 + +0.1 3,400,217 - -0.2 3,400,232 - +0.2 3,400,300 + +0.3 3,400,317 - +0.2 3,400,317 - -0.9 3,400,351 + -1.1 3,400,429 + -0.9 3,400,429 + -0.2 3,400,489 + -1.1 3,400,490 - +0.0 3,400,490 - -0.2 3,400,493 + +0.3 3,400,501 + -0.2 3,400,515 + +0.6 3,400,515 + +0.0 3,400,515 + -0.1 3,400,516 - +0.1 3,400,516 - +0.3 3,400,516 - +0.0 3,400,530 + -0.4 3,400,530 + +0.1 3,400,530 + +0.9 3,400,530 + +0.6 3,400,531 - +0.0 3,400,531 - -0.3 3,400,531 - +0.8 3,400,531 - -0.0 3,400,541 + -0.7 3,400,542 - +0.1 3,400,587 + ECD_03260 0.28 +0.5 3,400,618 + ECD_03260 0.41 -0.5 3,400,618 + ECD_03260 0.41 +0.2 3,400,619 - ECD_03260 0.42 +0.3 3,400,619 - ECD_03260 0.42 +0.1 3,400,634 + ECD_03260 0.48 -0.7 3,400,634 + ECD_03260 0.48 +0.2 3,400,699 + ECD_03260 0.77 +0.1 3,400,700 - ECD_03260 0.77 +0.5 3,400,702 + ECD_03260 0.78 +0.2 3,400,726 + ECD_03260 0.89 +0.8 3,400,727 - ECD_03260 0.89 +0.1 3,400,727 - ECD_03260 0.89 +0.6 3,400,749 + -0.3 3,400,750 - +0.7 3,400,752 + +0.3 3,400,753 - +0.1 3,400,753 - -0.4 3,400,753 - -0.3 3,400,785 - +0.6 3,400,790 + +0.1 3,400,790 + -0.6 3,400,791 - -0.3 3,400,823 + +0.0 3,400,823 + -0.7 3,400,823 + +0.5 3,400,823 + +1.1 3,400,856 + -0.1 3,400,860 + -0.7 3,400,860 + +0.3 3,400,861 - -0.0 3,400,861 - +0.1 3,400,861 - -0.4 3,400,888 - +0.8 3,400,948 + +0.6 3,400,948 + -0.3 3,400,949 - -0.3 3,400,949 - +0.5 3,400,949 - +0.8 3,401,005 + ECD_03261 0.10 +0.3 3,401,006 - ECD_03261 0.10 +0.4 3,401,055 + ECD_03261 0.12 -0.2 3,401,056 - ECD_03261 0.12 -0.8 3,401,074 + ECD_03261 0.13 +0.6 3,401,075 - ECD_03261 0.13 +0.6 3,401,084 + ECD_03261 0.14 -0.0
Or see this region's nucleotide sequence