Strain Fitness in Escherichia coli BL21 around ECD_03259

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03257 and ECD_03258 are separated by 227 nucleotidesECD_03258 and ECD_03259 are separated by 96 nucleotidesECD_03259 and ECD_03260 are separated by 437 nucleotidesECD_03260 and ECD_03261 are separated by 16 nucleotides ECD_03257: ECD_03257 - response regulator in two-component regulatory system with EnvZ, at 3,396,245 to 3,396,964 _03257 ECD_03258: ECD_03258 - transcript cleavage factor, at 3,397,192 to 3,397,668 _03258 ECD_03259: ECD_03259 - putative transcriptional accessory protein, at 3,397,765 to 3,400,086 _03259 ECD_03260: ECD_03260 - ferrous iron transporter, protein A, at 3,400,524 to 3,400,751 _03260 ECD_03261: ECD_03261 - ferrous iron transporter protein B and GTP-binding protein; membrane protein, at 3,400,768 to 3,403,089 _03261 Position (kb) 3397 3398 3399 3400 3401Strain fitness (log2 ratio) -2 -1 0 1at 3396.797 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.811 kb on + strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.812 kb on - strand, within ECD_03257at 3396.897 kb on + strandat 3396.952 kb on - strandat 3396.952 kb on - strandat 3396.998 kb on - strandat 3397.005 kb on + strandat 3397.038 kb on - strandat 3397.061 kb on - strandat 3397.080 kb on + strandat 3397.093 kb on - strandat 3397.135 kb on + strandat 3397.147 kb on - strandat 3397.148 kb on + strandat 3397.148 kb on + strandat 3397.245 kb on + strand, within ECD_03258at 3397.245 kb on + strand, within ECD_03258at 3397.249 kb on + strand, within ECD_03258at 3397.249 kb on + strand, within ECD_03258at 3397.333 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.339 kb on + strand, within ECD_03258at 3397.340 kb on - strand, within ECD_03258at 3397.340 kb on - strand, within ECD_03258at 3397.390 kb on - strand, within ECD_03258at 3397.420 kb on + strand, within ECD_03258at 3397.503 kb on + strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.541 kb on - strand, within ECD_03258at 3397.612 kb on - strand, within ECD_03258at 3397.636 kb on + strandat 3397.636 kb on + strandat 3397.637 kb on - strandat 3397.637 kb on - strandat 3397.637 kb on - strandat 3397.641 kb on + strandat 3397.642 kb on - strandat 3397.680 kb on - strandat 3397.722 kb on + strandat 3397.722 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.726 kb on + strandat 3397.860 kb on + strandat 3397.861 kb on - strandat 3397.861 kb on - strandat 3397.882 kb on + strandat 3397.926 kb on + strandat 3397.926 kb on + strandat 3397.927 kb on - strandat 3397.948 kb on + strandat 3397.948 kb on + strandat 3398.197 kb on + strand, within ECD_03259at 3398.197 kb on + strand, within ECD_03259at 3398.197 kb on + strand, within ECD_03259at 3398.197 kb on + strand, within ECD_03259at 3398.254 kb on + strand, within ECD_03259at 3398.255 kb on - strand, within ECD_03259at 3398.255 kb on - strand, within ECD_03259at 3398.311 kb on + strand, within ECD_03259at 3398.312 kb on - strand, within ECD_03259at 3398.312 kb on - strand, within ECD_03259at 3398.312 kb on - strand, within ECD_03259at 3398.465 kb on + strand, within ECD_03259at 3398.465 kb on + strand, within ECD_03259at 3398.466 kb on - strand, within ECD_03259at 3398.521 kb on + strand, within ECD_03259at 3398.521 kb on + strand, within ECD_03259at 3398.521 kb on + strand, within ECD_03259at 3398.522 kb on - strand, within ECD_03259at 3398.555 kb on + strand, within ECD_03259at 3398.580 kb on + strand, within ECD_03259at 3398.597 kb on + strand, within ECD_03259at 3398.784 kb on - strand, within ECD_03259at 3398.837 kb on - strand, within ECD_03259at 3398.898 kb on + strand, within ECD_03259at 3398.898 kb on + strand, within ECD_03259at 3398.899 kb on - strand, within ECD_03259at 3398.899 kb on - strand, within ECD_03259at 3398.928 kb on + strand, within ECD_03259at 3398.929 kb on - strand, within ECD_03259at 3399.032 kb on - strand, within ECD_03259at 3399.164 kb on + strand, within ECD_03259at 3399.165 kb on - strand, within ECD_03259at 3399.165 kb on - strand, within ECD_03259at 3399.221 kb on + strand, within ECD_03259at 3399.224 kb on + strand, within ECD_03259at 3399.225 kb on - strand, within ECD_03259at 3399.225 kb on - strand, within ECD_03259at 3399.225 kb on - strand, within ECD_03259at 3399.579 kb on + strand, within ECD_03259at 3399.609 kb on - strand, within ECD_03259at 3399.900 kb on + strandat 3399.906 kb on + strandat 3399.918 kb on + strandat 3400.161 kb on + strandat 3400.162 kb on - strandat 3400.162 kb on - strandat 3400.178 kb on - strandat 3400.212 kb on - strandat 3400.215 kb on - strandat 3400.215 kb on - strandat 3400.216 kb on + strandat 3400.217 kb on - strandat 3400.232 kb on - strandat 3400.300 kb on + strandat 3400.317 kb on - strandat 3400.317 kb on - strandat 3400.351 kb on + strandat 3400.429 kb on + strandat 3400.429 kb on + strandat 3400.489 kb on + strandat 3400.490 kb on - strandat 3400.490 kb on - strandat 3400.493 kb on + strandat 3400.501 kb on + strandat 3400.515 kb on + strandat 3400.515 kb on + strandat 3400.515 kb on + strandat 3400.516 kb on - strandat 3400.516 kb on - strandat 3400.516 kb on - strandat 3400.530 kb on + strandat 3400.530 kb on + strandat 3400.530 kb on + strandat 3400.530 kb on + strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.531 kb on - strandat 3400.541 kb on + strandat 3400.542 kb on - strandat 3400.587 kb on + strand, within ECD_03260at 3400.618 kb on + strand, within ECD_03260at 3400.618 kb on + strand, within ECD_03260at 3400.619 kb on - strand, within ECD_03260at 3400.619 kb on - strand, within ECD_03260at 3400.634 kb on + strand, within ECD_03260at 3400.634 kb on + strand, within ECD_03260at 3400.699 kb on + strand, within ECD_03260at 3400.700 kb on - strand, within ECD_03260at 3400.702 kb on + strand, within ECD_03260at 3400.726 kb on + strand, within ECD_03260at 3400.727 kb on - strand, within ECD_03260at 3400.727 kb on - strand, within ECD_03260at 3400.749 kb on + strandat 3400.750 kb on - strandat 3400.752 kb on + strandat 3400.753 kb on - strandat 3400.753 kb on - strandat 3400.753 kb on - strandat 3400.785 kb on - strandat 3400.790 kb on + strandat 3400.790 kb on + strandat 3400.791 kb on - strandat 3400.823 kb on + strandat 3400.823 kb on + strandat 3400.823 kb on + strandat 3400.823 kb on + strandat 3400.856 kb on + strandat 3400.860 kb on + strandat 3400.860 kb on + strandat 3400.861 kb on - strandat 3400.861 kb on - strandat 3400.861 kb on - strandat 3400.888 kb on - strandat 3400.948 kb on + strandat 3400.948 kb on + strandat 3400.949 kb on - strandat 3400.949 kb on - strandat 3400.949 kb on - strandat 3401.005 kb on + strand, within ECD_03261at 3401.006 kb on - strand, within ECD_03261at 3401.055 kb on + strand, within ECD_03261at 3401.056 kb on - strand, within ECD_03261at 3401.074 kb on + strand, within ECD_03261at 3401.075 kb on - strand, within ECD_03261at 3401.084 kb on + strand, within ECD_03261

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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3,396,797 + ECD_03257 0.77 -1.3
3,396,811 + ECD_03257 0.79 -0.3
3,396,811 + ECD_03257 0.79 +0.4
3,396,812 - ECD_03257 0.79 +0.5
3,396,812 - ECD_03257 0.79 -0.7
3,396,897 + +0.1
3,396,952 - -1.5
3,396,952 - -0.6
3,396,998 - +0.3
3,397,005 + -0.3
3,397,038 - -0.1
3,397,061 - -0.6
3,397,080 + -0.3
3,397,093 - +0.2
3,397,135 + +0.5
3,397,147 - +0.8
3,397,148 + +0.3
3,397,148 + +0.2
3,397,245 + ECD_03258 0.11 -0.2
3,397,245 + ECD_03258 0.11 +1.2
3,397,249 + ECD_03258 0.12 +0.4
3,397,249 + ECD_03258 0.12 -0.8
3,397,333 + ECD_03258 0.30 -0.0
3,397,339 + ECD_03258 0.31 -1.2
3,397,339 + ECD_03258 0.31 +0.4
3,397,339 + ECD_03258 0.31 +0.8
3,397,339 + ECD_03258 0.31 -0.6
3,397,340 - ECD_03258 0.31 -0.1
3,397,340 - ECD_03258 0.31 +0.5
3,397,390 - ECD_03258 0.42 -0.4
3,397,420 + ECD_03258 0.48 -0.3
3,397,503 + ECD_03258 0.65 +0.9
3,397,541 - ECD_03258 0.73 -2.3
3,397,541 - ECD_03258 0.73 +0.5
3,397,541 - ECD_03258 0.73 +0.4
3,397,612 - ECD_03258 0.88 -0.2
3,397,636 + -1.1
3,397,636 + -0.1
3,397,637 - -0.6
3,397,637 - +0.7
3,397,637 - +0.2
3,397,641 + -2.3
3,397,642 - -0.1
3,397,680 - -0.2
3,397,722 + -0.1
3,397,722 + -0.4
3,397,726 + +0.1
3,397,726 + +0.5
3,397,726 + -0.5
3,397,726 + +0.7
3,397,726 + -0.1
3,397,860 + +0.4
3,397,861 - -2.6
3,397,861 - +0.9
3,397,882 + +0.4
3,397,926 + -0.4
3,397,926 + -0.2
3,397,927 - -0.2
3,397,948 + -0.0
3,397,948 + +0.6
3,398,197 + ECD_03259 0.19 +0.2
3,398,197 + ECD_03259 0.19 +1.3
3,398,197 + ECD_03259 0.19 +1.0
3,398,197 + ECD_03259 0.19 -0.5
3,398,254 + ECD_03259 0.21 -0.5
3,398,255 - ECD_03259 0.21 -0.6
3,398,255 - ECD_03259 0.21 -0.1
3,398,311 + ECD_03259 0.24 +1.0
3,398,312 - ECD_03259 0.24 -0.3
3,398,312 - ECD_03259 0.24 +0.5
3,398,312 - ECD_03259 0.24 +0.6
3,398,465 + ECD_03259 0.30 +0.4
3,398,465 + ECD_03259 0.30 -0.6
3,398,466 - ECD_03259 0.30 +0.0
3,398,521 + ECD_03259 0.33 +0.3
3,398,521 + ECD_03259 0.33 -0.4
3,398,521 + ECD_03259 0.33 -0.1
3,398,522 - ECD_03259 0.33 +0.3
3,398,555 + ECD_03259 0.34 -0.1
3,398,580 + ECD_03259 0.35 +0.1
3,398,597 + ECD_03259 0.36 -0.5
3,398,784 - ECD_03259 0.44 +1.1
3,398,837 - ECD_03259 0.46 +0.0
3,398,898 + ECD_03259 0.49 +0.4
3,398,898 + ECD_03259 0.49 +1.0
3,398,899 - ECD_03259 0.49 +0.5
3,398,899 - ECD_03259 0.49 +0.6
3,398,928 + ECD_03259 0.50 +0.8
3,398,929 - ECD_03259 0.50 +0.5
3,399,032 - ECD_03259 0.55 +0.3
3,399,164 + ECD_03259 0.60 -0.5
3,399,165 - ECD_03259 0.60 +0.6
3,399,165 - ECD_03259 0.60 -0.3
3,399,221 + ECD_03259 0.63 +0.8
3,399,224 + ECD_03259 0.63 +1.5
3,399,225 - ECD_03259 0.63 -0.4
3,399,225 - ECD_03259 0.63 +0.5
3,399,225 - ECD_03259 0.63 -0.1
3,399,579 + ECD_03259 0.78 +0.1
3,399,609 - ECD_03259 0.79 +0.1
3,399,900 + -0.7
3,399,906 + +0.9
3,399,918 + -0.1
3,400,161 + +0.8
3,400,162 - +0.9
3,400,162 - -0.4
3,400,178 - -0.1
3,400,212 - +0.5
3,400,215 - -0.3
3,400,215 - +0.8
3,400,216 + +0.1
3,400,217 - -0.2
3,400,232 - +0.2
3,400,300 + +0.3
3,400,317 - +0.2
3,400,317 - -0.9
3,400,351 + -1.1
3,400,429 + -0.9
3,400,429 + -0.2
3,400,489 + -1.1
3,400,490 - +0.0
3,400,490 - -0.2
3,400,493 + +0.3
3,400,501 + -0.2
3,400,515 + +0.6
3,400,515 + +0.0
3,400,515 + -0.1
3,400,516 - +0.1
3,400,516 - +0.3
3,400,516 - +0.0
3,400,530 + -0.4
3,400,530 + +0.1
3,400,530 + +0.9
3,400,530 + +0.6
3,400,531 - +0.0
3,400,531 - -0.3
3,400,531 - +0.8
3,400,531 - -0.0
3,400,541 + -0.7
3,400,542 - +0.1
3,400,587 + ECD_03260 0.28 +0.5
3,400,618 + ECD_03260 0.41 -0.5
3,400,618 + ECD_03260 0.41 +0.2
3,400,619 - ECD_03260 0.42 +0.3
3,400,619 - ECD_03260 0.42 +0.1
3,400,634 + ECD_03260 0.48 -0.7
3,400,634 + ECD_03260 0.48 +0.2
3,400,699 + ECD_03260 0.77 +0.1
3,400,700 - ECD_03260 0.77 +0.5
3,400,702 + ECD_03260 0.78 +0.2
3,400,726 + ECD_03260 0.89 +0.8
3,400,727 - ECD_03260 0.89 +0.1
3,400,727 - ECD_03260 0.89 +0.6
3,400,749 + -0.3
3,400,750 - +0.7
3,400,752 + +0.3
3,400,753 - +0.1
3,400,753 - -0.4
3,400,753 - -0.3
3,400,785 - +0.6
3,400,790 + +0.1
3,400,790 + -0.6
3,400,791 - -0.3
3,400,823 + +0.0
3,400,823 + -0.7
3,400,823 + +0.5
3,400,823 + +1.1
3,400,856 + -0.1
3,400,860 + -0.7
3,400,860 + +0.3
3,400,861 - -0.0
3,400,861 - +0.1
3,400,861 - -0.4
3,400,888 - +0.8
3,400,948 + +0.6
3,400,948 + -0.3
3,400,949 - -0.3
3,400,949 - +0.5
3,400,949 - +0.8
3,401,005 + ECD_03261 0.10 +0.3
3,401,006 - ECD_03261 0.10 +0.4
3,401,055 + ECD_03261 0.12 -0.2
3,401,056 - ECD_03261 0.12 -0.8
3,401,074 + ECD_03261 0.13 +0.6
3,401,075 - ECD_03261 0.13 +0.6
3,401,084 + ECD_03261 0.14 -0.0

Or see this region's nucleotide sequence