Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03061 and ECD_03062 are separated by 13 nucleotides ECD_03062 and ECD_03063 are separated by 20 nucleotides ECD_03063 and ECD_03064 overlap by 4 nucleotides
ECD_03061: ECD_03061 - putative calcium/sodium:proton antiporter, at 3,208,775 to 3,209,752
_03061
ECD_03062: ECD_03062 - D-arabinose 5-phosphate isomerase, at 3,209,766 to 3,210,752
_03062
ECD_03063: ECD_03063 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 3,210,773 to 3,211,339
_03063
ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911
_03064
Position (kb)
3209
3210
3211 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3208.772 kb on + strand at 3208.772 kb on + strand at 3208.773 kb on - strand at 3208.782 kb on + strand at 3208.782 kb on + strand at 3208.782 kb on + strand at 3208.782 kb on + strand at 3208.798 kb on - strand at 3208.823 kb on + strand at 3208.913 kb on - strand, within ECD_03061 at 3208.918 kb on + strand, within ECD_03061 at 3208.918 kb on + strand, within ECD_03061 at 3208.918 kb on + strand, within ECD_03061 at 3209.008 kb on + strand, within ECD_03061 at 3209.014 kb on + strand, within ECD_03061 at 3209.014 kb on + strand, within ECD_03061 at 3209.014 kb on + strand, within ECD_03061 at 3209.014 kb on + strand, within ECD_03061 at 3209.014 kb on + strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.015 kb on - strand, within ECD_03061 at 3209.016 kb on + strand, within ECD_03061 at 3209.016 kb on + strand, within ECD_03061 at 3209.017 kb on - strand, within ECD_03061 at 3209.056 kb on + strand, within ECD_03061 at 3209.076 kb on + strand, within ECD_03061 at 3209.077 kb on - strand, within ECD_03061 at 3209.088 kb on + strand, within ECD_03061 at 3209.095 kb on - strand, within ECD_03061 at 3209.127 kb on + strand, within ECD_03061 at 3209.127 kb on + strand, within ECD_03061 at 3209.133 kb on - strand, within ECD_03061 at 3209.133 kb on - strand, within ECD_03061 at 3209.146 kb on + strand, within ECD_03061 at 3209.161 kb on + strand, within ECD_03061 at 3209.162 kb on - strand, within ECD_03061 at 3209.187 kb on + strand, within ECD_03061 at 3209.187 kb on + strand, within ECD_03061 at 3209.187 kb on + strand, within ECD_03061 at 3209.187 kb on + strand, within ECD_03061 at 3209.188 kb on - strand, within ECD_03061 at 3209.188 kb on - strand, within ECD_03061 at 3209.206 kb on + strand, within ECD_03061 at 3209.323 kb on + strand, within ECD_03061 at 3209.323 kb on + strand, within ECD_03061 at 3209.323 kb on + strand, within ECD_03061 at 3209.324 kb on - strand, within ECD_03061 at 3209.381 kb on + strand, within ECD_03061 at 3209.381 kb on + strand, within ECD_03061 at 3209.460 kb on + strand, within ECD_03061 at 3209.504 kb on - strand, within ECD_03061 at 3209.524 kb on + strand, within ECD_03061 at 3209.525 kb on - strand, within ECD_03061 at 3209.527 kb on + strand, within ECD_03061 at 3209.588 kb on + strand, within ECD_03061 at 3209.589 kb on - strand, within ECD_03061 at 3209.600 kb on + strand, within ECD_03061 at 3209.601 kb on - strand, within ECD_03061 at 3209.676 kb on + strand at 3209.676 kb on + strand at 3209.677 kb on - strand at 3209.682 kb on + strand at 3209.683 kb on - strand at 3209.683 kb on - strand at 3209.685 kb on + strand at 3209.685 kb on + strand at 3209.688 kb on + strand at 3209.688 kb on + strand at 3209.689 kb on - strand at 3209.706 kb on + strand at 3209.707 kb on - strand at 3209.707 kb on - strand at 3209.724 kb on - strand at 3209.750 kb on + strand at 3209.750 kb on + strand at 3209.765 kb on + strand at 3209.765 kb on + strand at 3209.765 kb on + strand at 3209.765 kb on + strand at 3209.765 kb on + strand at 3209.765 kb on + strand at 3209.776 kb on + strand at 3209.776 kb on + strand at 3209.783 kb on - strand at 3209.862 kb on + strand at 3209.862 kb on + strand at 3209.863 kb on - strand at 3210.077 kb on + strand, within ECD_03062 at 3210.109 kb on + strand, within ECD_03062 at 3210.110 kb on - strand, within ECD_03062 at 3210.122 kb on + strand, within ECD_03062 at 3210.122 kb on + strand, within ECD_03062 at 3210.122 kb on + strand, within ECD_03062 at 3210.137 kb on - strand, within ECD_03062 at 3210.392 kb on + strand, within ECD_03062 at 3210.392 kb on + strand, within ECD_03062 at 3210.393 kb on - strand, within ECD_03062 at 3210.422 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.610 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.730 kb on + strand at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3211.058 kb on + strand, within ECD_03063 at 3211.136 kb on + strand, within ECD_03063 at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,208,772 + +1.1 3,208,772 + +0.1 3,208,773 - -0.1 3,208,782 + +0.6 3,208,782 + +0.8 3,208,782 + +0.0 3,208,782 + -0.1 3,208,798 - +0.2 3,208,823 + +1.0 3,208,913 - ECD_03061 0.14 -0.3 3,208,918 + ECD_03061 0.15 +0.1 3,208,918 + ECD_03061 0.15 -0.6 3,208,918 + ECD_03061 0.15 +0.1 3,209,008 + ECD_03061 0.24 -0.2 3,209,014 + ECD_03061 0.24 +0.3 3,209,014 + ECD_03061 0.24 -0.3 3,209,014 + ECD_03061 0.24 -0.1 3,209,014 + ECD_03061 0.24 +0.9 3,209,014 + ECD_03061 0.24 +0.9 3,209,015 - ECD_03061 0.25 +0.3 3,209,015 - ECD_03061 0.25 +0.3 3,209,015 - ECD_03061 0.25 -0.2 3,209,015 - ECD_03061 0.25 +0.4 3,209,015 - ECD_03061 0.25 -1.2 3,209,015 - ECD_03061 0.25 -0.1 3,209,016 + ECD_03061 0.25 +0.5 3,209,016 + ECD_03061 0.25 +0.0 3,209,017 - ECD_03061 0.25 -0.3 3,209,056 + ECD_03061 0.29 -0.4 3,209,076 + ECD_03061 0.31 -0.8 3,209,077 - ECD_03061 0.31 -0.1 3,209,088 + ECD_03061 0.32 -0.2 3,209,095 - ECD_03061 0.33 -0.6 3,209,127 + ECD_03061 0.36 +0.1 3,209,127 + ECD_03061 0.36 -0.4 3,209,133 - ECD_03061 0.37 -0.3 3,209,133 - ECD_03061 0.37 -0.2 3,209,146 + ECD_03061 0.38 -0.5 3,209,161 + ECD_03061 0.39 +0.1 3,209,162 - ECD_03061 0.40 -1.0 3,209,187 + ECD_03061 0.42 +0.1 3,209,187 + ECD_03061 0.42 +0.0 3,209,187 + ECD_03061 0.42 -0.0 3,209,187 + ECD_03061 0.42 +0.1 3,209,188 - ECD_03061 0.42 +0.1 3,209,188 - ECD_03061 0.42 -1.0 3,209,206 + ECD_03061 0.44 -0.6 3,209,323 + ECD_03061 0.56 +1.1 3,209,323 + ECD_03061 0.56 +0.7 3,209,323 + ECD_03061 0.56 -0.1 3,209,324 - ECD_03061 0.56 +0.3 3,209,381 + ECD_03061 0.62 -0.2 3,209,381 + ECD_03061 0.62 +0.1 3,209,460 + ECD_03061 0.70 +0.5 3,209,504 - ECD_03061 0.75 +0.5 3,209,524 + ECD_03061 0.77 +0.1 3,209,525 - ECD_03061 0.77 -0.0 3,209,527 + ECD_03061 0.77 +0.6 3,209,588 + ECD_03061 0.83 +0.1 3,209,589 - ECD_03061 0.83 +0.1 3,209,600 + ECD_03061 0.84 -0.1 3,209,601 - ECD_03061 0.84 -0.6 3,209,676 + +1.3 3,209,676 + -1.3 3,209,677 - +0.2 3,209,682 + +0.1 3,209,683 - -0.6 3,209,683 - +0.6 3,209,685 + +0.2 3,209,685 + -0.9 3,209,688 + -0.0 3,209,688 + +0.3 3,209,689 - +0.1 3,209,706 + +0.7 3,209,707 - +0.8 3,209,707 - +1.3 3,209,724 - +1.8 3,209,750 + -1.8 3,209,750 + -0.1 3,209,765 + -0.1 3,209,765 + -0.1 3,209,765 + -1.1 3,209,765 + +0.3 3,209,765 + -0.4 3,209,765 + -0.5 3,209,776 + +0.2 3,209,776 + +0.3 3,209,783 - +0.2 3,209,862 + +0.7 3,209,862 + +0.5 3,209,863 - -0.1 3,210,077 + ECD_03062 0.32 +0.2 3,210,109 + ECD_03062 0.35 -0.6 3,210,110 - ECD_03062 0.35 +1.0 3,210,122 + ECD_03062 0.36 +0.7 3,210,122 + ECD_03062 0.36 -0.3 3,210,122 + ECD_03062 0.36 -0.4 3,210,137 - ECD_03062 0.38 +0.2 3,210,392 + ECD_03062 0.63 -0.1 3,210,392 + ECD_03062 0.63 -0.6 3,210,393 - ECD_03062 0.64 +0.1 3,210,422 + ECD_03062 0.66 -0.0 3,210,503 + ECD_03062 0.75 +0.3 3,210,503 + ECD_03062 0.75 -0.2 3,210,503 + ECD_03062 0.75 -0.0 3,210,503 + ECD_03062 0.75 -2.1 3,210,577 + ECD_03062 0.82 +0.7 3,210,577 + ECD_03062 0.82 +0.5 3,210,610 + ECD_03062 0.86 +0.5 3,210,652 + ECD_03062 0.90 -0.1 3,210,652 + ECD_03062 0.90 -1.1 3,210,652 + ECD_03062 0.90 -0.0 3,210,715 + +0.5 3,210,715 + +0.4 3,210,715 + +0.2 3,210,715 + -0.0 3,210,715 + +0.1 3,210,715 + +0.2 3,210,715 + -0.2 3,210,715 + +0.1 3,210,719 + +0.2 3,210,719 + +0.2 3,210,719 + -0.0 3,210,719 + -0.4 3,210,719 + -0.2 3,210,719 + -0.3 3,210,719 + -0.2 3,210,719 + -0.1 3,210,719 + +0.1 3,210,719 + -0.3 3,210,719 + -0.0 3,210,719 + -0.8 3,210,719 + +0.3 3,210,719 + +0.2 3,210,730 + -0.3 3,210,899 + ECD_03063 0.22 -0.1 3,210,899 + ECD_03063 0.22 -0.4 3,210,899 + ECD_03063 0.22 -0.1 3,210,899 + ECD_03063 0.22 -0.7 3,211,058 + ECD_03063 0.50 -0.6 3,211,136 + ECD_03063 0.64 +1.2 3,211,287 + +0.2 3,211,287 + -0.5 3,211,287 + -0.2 3,211,287 + -0.5 3,211,287 + +0.1
Or see this region's nucleotide sequence