Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02958 and ECD_02959 are separated by 4 nucleotides ECD_02959 and ECD_02960 are separated by 82 nucleotides
ECD_02958: ECD_02958 - sodium:serine/threonine symporter, at 3,106,243 to 3,107,487
_02958
ECD_02959: ECD_02959 - Imp-YgjV family inner membrane protein, at 3,107,492 to 3,108,043
_02959
ECD_02960: ECD_02960 - altronate hydrolase, at 3,108,126 to 3,109,613
_02960
Position (kb)
3107
3108
3109 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3106.504 kb on + strand, within ECD_02958 at 3106.541 kb on + strand, within ECD_02958 at 3106.541 kb on + strand, within ECD_02958 at 3106.597 kb on - strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.688 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.791 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.922 kb on + strand, within ECD_02958 at 3107.020 kb on + strand, within ECD_02958 at 3107.020 kb on + strand, within ECD_02958 at 3107.021 kb on - strand, within ECD_02958 at 3107.021 kb on - strand, within ECD_02958 at 3107.065 kb on - strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.105 kb on - strand, within ECD_02958 at 3107.115 kb on + strand, within ECD_02958 at 3107.116 kb on - strand, within ECD_02958 at 3107.164 kb on - strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.310 kb on + strand, within ECD_02958 at 3107.313 kb on + strand, within ECD_02958 at 3107.313 kb on + strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.323 kb on - strand, within ECD_02958 at 3107.482 kb on - strand at 3107.482 kb on - strand at 3107.725 kb on + strand, within ECD_02959 at 3107.753 kb on + strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.826 kb on - strand, within ECD_02959 at 3107.840 kb on + strand, within ECD_02959 at 3107.840 kb on + strand, within ECD_02959 at 3107.841 kb on - strand, within ECD_02959 at 3107.845 kb on + strand, within ECD_02959 at 3107.845 kb on + strand, within ECD_02959 at 3107.846 kb on - strand, within ECD_02959 at 3107.846 kb on - strand, within ECD_02959 at 3107.854 kb on + strand, within ECD_02959 at 3107.854 kb on + strand, within ECD_02959 at 3107.855 kb on - strand, within ECD_02959 at 3107.855 kb on - strand, within ECD_02959 at 3107.933 kb on - strand, within ECD_02959 at 3107.934 kb on + strand, within ECD_02959 at 3108.047 kb on - strand at 3108.055 kb on - strand at 3108.127 kb on + strand at 3108.129 kb on + strand at 3108.135 kb on + strand at 3108.390 kb on - strand, within ECD_02960 at 3108.390 kb on - strand, within ECD_02960 at 3108.447 kb on + strand, within ECD_02960 at 3108.447 kb on + strand, within ECD_02960 at 3108.448 kb on - strand, within ECD_02960 at 3108.448 kb on - strand, within ECD_02960 at 3108.527 kb on + strand, within ECD_02960 at 3108.595 kb on + strand, within ECD_02960 at 3108.596 kb on - strand, within ECD_02960 at 3108.618 kb on - strand, within ECD_02960 at 3108.622 kb on + strand, within ECD_02960 at 3108.622 kb on + strand, within ECD_02960 at 3108.623 kb on - strand, within ECD_02960 at 3108.795 kb on - strand, within ECD_02960 at 3108.889 kb on + strand, within ECD_02960 at 3108.889 kb on + strand, within ECD_02960 at 3108.889 kb on + strand, within ECD_02960 at 3108.889 kb on + strand, within ECD_02960 at 3108.890 kb on - strand, within ECD_02960 at 3108.890 kb on - strand, within ECD_02960
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 3,106,504 + ECD_02958 0.21 -0.1 3,106,541 + ECD_02958 0.24 +0.7 3,106,541 + ECD_02958 0.24 +0.2 3,106,597 - ECD_02958 0.28 +0.4 3,106,687 + ECD_02958 0.36 +0.8 3,106,687 + ECD_02958 0.36 +0.4 3,106,687 + ECD_02958 0.36 -0.6 3,106,687 + ECD_02958 0.36 -0.6 3,106,687 + ECD_02958 0.36 +0.3 3,106,688 - ECD_02958 0.36 -1.1 3,106,771 - ECD_02958 0.42 +0.6 3,106,771 - ECD_02958 0.42 +0.8 3,106,771 - ECD_02958 0.42 -0.2 3,106,771 - ECD_02958 0.42 +0.8 3,106,791 + ECD_02958 0.44 +0.5 3,106,917 + ECD_02958 0.54 -0.3 3,106,917 + ECD_02958 0.54 -0.4 3,106,917 + ECD_02958 0.54 -0.3 3,106,918 - ECD_02958 0.54 +0.7 3,106,918 - ECD_02958 0.54 -0.1 3,106,918 - ECD_02958 0.54 -0.3 3,106,922 + ECD_02958 0.55 +0.5 3,107,020 + ECD_02958 0.62 +0.4 3,107,020 + ECD_02958 0.62 +0.5 3,107,021 - ECD_02958 0.62 -0.0 3,107,021 - ECD_02958 0.62 -0.7 3,107,065 - ECD_02958 0.66 -0.2 3,107,100 + ECD_02958 0.69 -0.6 3,107,100 + ECD_02958 0.69 +0.6 3,107,100 + ECD_02958 0.69 +1.2 3,107,100 + ECD_02958 0.69 -0.4 3,107,105 - ECD_02958 0.69 +1.0 3,107,115 + ECD_02958 0.70 +1.2 3,107,116 - ECD_02958 0.70 +0.8 3,107,164 - ECD_02958 0.74 +0.3 3,107,190 + ECD_02958 0.76 +0.1 3,107,190 + ECD_02958 0.76 +0.6 3,107,190 + ECD_02958 0.76 -0.4 3,107,310 + ECD_02958 0.86 +1.1 3,107,313 + ECD_02958 0.86 -1.2 3,107,313 + ECD_02958 0.86 +0.5 3,107,314 - ECD_02958 0.86 -1.1 3,107,314 - ECD_02958 0.86 +2.0 3,107,314 - ECD_02958 0.86 +0.4 3,107,314 - ECD_02958 0.86 +0.2 3,107,314 - ECD_02958 0.86 +0.9 3,107,323 - ECD_02958 0.87 -0.9 3,107,482 - -0.3 3,107,482 - +0.8 3,107,725 + ECD_02959 0.42 +0.4 3,107,753 + ECD_02959 0.47 -0.1 3,107,754 - ECD_02959 0.47 +0.6 3,107,754 - ECD_02959 0.47 +0.1 3,107,754 - ECD_02959 0.47 -1.6 3,107,826 - ECD_02959 0.61 +1.4 3,107,840 + ECD_02959 0.63 -0.1 3,107,840 + ECD_02959 0.63 +0.7 3,107,841 - ECD_02959 0.63 +2.2 3,107,845 + ECD_02959 0.64 -2.0 3,107,845 + ECD_02959 0.64 -0.4 3,107,846 - ECD_02959 0.64 -1.4 3,107,846 - ECD_02959 0.64 -0.2 3,107,854 + ECD_02959 0.66 +0.4 3,107,854 + ECD_02959 0.66 -0.4 3,107,855 - ECD_02959 0.66 +0.3 3,107,855 - ECD_02959 0.66 +0.8 3,107,933 - ECD_02959 0.80 +0.2 3,107,934 + ECD_02959 0.80 -1.0 3,108,047 - +0.3 3,108,055 - +0.5 3,108,127 + +0.5 3,108,129 + +0.2 3,108,135 + +0.5 3,108,390 - ECD_02960 0.18 -0.8 3,108,390 - ECD_02960 0.18 +0.0 3,108,447 + ECD_02960 0.22 +0.0 3,108,447 + ECD_02960 0.22 +0.0 3,108,448 - ECD_02960 0.22 +0.5 3,108,448 - ECD_02960 0.22 -0.2 3,108,527 + ECD_02960 0.27 -0.5 3,108,595 + ECD_02960 0.32 -0.9 3,108,596 - ECD_02960 0.32 +0.4 3,108,618 - ECD_02960 0.33 +0.3 3,108,622 + ECD_02960 0.33 +0.4 3,108,622 + ECD_02960 0.33 -0.1 3,108,623 - ECD_02960 0.33 -0.9 3,108,795 - ECD_02960 0.45 -0.4 3,108,889 + ECD_02960 0.51 -0.3 3,108,889 + ECD_02960 0.51 +0.6 3,108,889 + ECD_02960 0.51 -0.0 3,108,889 + ECD_02960 0.51 -0.0 3,108,890 - ECD_02960 0.51 -0.2 3,108,890 - ECD_02960 0.51 +0.5
Or see this region's nucleotide sequence